Fish Transcriptome and Expression Database

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model fish

XLOC_004581 (CR354395.1)

Basic Information

Item	Value
gene id	XLOC_004581
gene name	CR354395.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	13658022 ~ 13658144 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009106
TCCTACAGCCATATCAACCTTCAGCCCAAGACCAAAGTTGCGTACTGAAGCTAAGCATGCAGgtctgagcctggttagtacctggatgggaggccaCATAGGGAAACTAGATTGTTGTTAGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000081749

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00009106	True	123	rRNA	0.49	1	13658022	13658144

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_004578	kcnh4b	coding	upstream	181934	13404784 ~ 13476088 (+)
XLOC_004579	BX649204.1	coding	upstream	200666	13457237 ~ 13457356 (+)
XLOC_004577	drosha	coding	upstream	267181	13344896 ~ 13390841 (+)
XLOC_004576	psme2	coding	upstream	326042	13319132 ~ 13331980 (+)
XLOC_004575	irf9	coding	upstream	351139	13282797 ~ 13306883 (+)
XLOC_004582	BX640453.1	coding	downstream	82072	13740216 ~ 13742676 (+)
XLOC_004583	ppp1r16a	coding	downstream	84634	13742778 ~ 13789973 (+)
XLOC_004584	fkbp10b	coding	downstream	247142	13905286 ~ 13957037 (+)
XLOC_004585	GPT	coding	downstream	420953	14079097 ~ 14130716 (+)
XLOC_004586	kbtbd2	coding	downstream	491542	14149686 ~ 14162781 (+)
XLOC_004569	BX548041.1	non-coding	upstream	1044571	12613335 ~ 12613451 (+)
XLOC_004568	NA	non-coding	upstream	1242187	12415256 ~ 12415835 (+)
XLOC_004565	CR450852.1	non-coding	upstream	2014351	11643551 ~ 11643671 (+)
XLOC_004556	CU459020.1	non-coding	upstream	3446974	10210932 ~ 10211048 (+)
XLOC_004589	NA	non-coding	downstream	1083008	14741152 ~ 14744702 (+)
XLOC_004590	NA	non-coding	downstream	1157456	14815600 ~ 14815945 (+)
XLOC_004593	NA	non-coding	downstream	1453261	15111405 ~ 15115431 (+)
XLOC_004597	CR749751.1	non-coding	downstream	1723550	15381694 ~ 15381814 (+)

Expression

Co-expression Network