XLOC_004575 (irf9)


Basic Information

Item Value
gene id XLOC_004575
gene name irf9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13282797 ~ 13306883 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009092
ACTGTGATCTACAGAACGACTGATACTGCACAGGACCGACACTAAAGGTGTTACAATTATCGTAACTGGAGCTGTCATTGTATGATTCTTTTCAGATGGCATCTGGAAGGATACGCTCCACACGCCGTCTGCGTTCATGGATAGTAGAACAGGTGAATAGTGGGAAGTATCTCGGCCTGGTTTGGGACAACCCAGAGAAAACCATGTTTCGCATCCCATGGAAACATGCAGGAAAACAAGACTTTCGCAGTGAGGAAGATGCAGCTATTTTCAAGGCTTGGGCGGCGTTTAAAGGGAAGCTCATGGAAAATGGAAATTCGGACCCTGCGTCCTGGAAAACACGCCTTCGATGTGCCCTCAACAAAAGTCCAGAATTTAGTGAGGTCACAGAAAGGTCACAGCTGGATATTTCAGAACCCTACAAGGTGTATCGCCTTGTACCACCAGAAGAACAAGGAGTGGTTAAAGTTAAaaaagagaatggtcagaaatcAGTGAGAAACAGCAAGAGGAAACACAGCGAATCTGAGAATGAACAGGAGACTGAAGGCAAGAAGATCAAAGAGGAGATTGTTGCACCACAGGCCATCAACATGAGTGCACAGGAAATCTTCATAAATACAGGAAGTGCAATAACAATTGAAACAGGGATGGAGAAGAGTGACAACAACACAGAAGATATCCAGTTAAACTTCACCATTGAAGCTGTACCTCTGGTCGAAAAGAGAGCACTGCACACTTTTCACATAACCGTGCACTACATTGGTCAGGAGGTTTTGCGGCAAGAAGTAATGAGAAACGATGTCCGGATCTCTTACCTACCTCGCTCACCTGTTCCTCCATCTCTACCATCTCTCAGTGGCTCCAACTTCCATCGAATCTTTCTCCCGGAACCTCCATCAGATATAAGCACAGACTCTAGTCTCGCCCCACGCTTGAATGCTCTTAAATCCCTGCTACCCTTCATGGAATGGGGAGTAGCGCTGACCTCCTTATCAGGAGGCATCTATGCCAAGCGCTTCTGCCAGGGACGGGTCTTCTGGAGAGGACCACATAGTTCCACCACAGGACCTTGTAAAATGGAAAGATCAGGCACGCCAACCCAGCTGTTTAACCGGGAGATATTTCAACAAGaGTTGGAATGTTTCCGCAATGGAGGAAAACAACCTCAAAGTGAGATCATTCTTTGTTTTGGAGAGGAGCTCTTGGAGGGAGATAACATCTCTGATAAACACATCATCATTAAGATATCTCTCCCTTGGGCTGAGGCGCAGATAGAAGAGGTCAAGGCCTTCAGAGAGTCCATTGCAATTCTCAAAAGTCTGGCCAGCCAGTCTCCTACAGGGGAAGTGACACTGAATTTTGTTGAAGTATCGGAATAACCAGTAACAAACTTCTGAGAAAACACTCACTGCATTCTTGACATTATGGATCAaaatcacaagcaaaatgacttGAGACAACTAAAAGTAACATTGTCCAGTGGTAGTGAGTGTAAATGCTACATTTATTAGCTGCTTCAactactatataaatatataatcctATCGCACTATTTATAAGTAGTTCAAAATGTTATTAGTCAGTGTAAGATTGTGTTTCACTATTTGTAATTTGTAGCACTGTACAAATCTTGTGCTTTAAGAGATTTAATCgcattaaatgcattaataacaatGTACACAATTTACTACAAATGGACTGTTACGTTAAACGGTACAATTTCATCCAACGCTAATGTATCAATAAATATATCACTCGGCTAAA
>TCONS_00009093
ACAGAACGACTGATACTGCACAGGACCGACACTAAAGATGGCATCTGGAAGGATACGCTCCACACGCCGTCTGCGTTCATGGATAGTAGAACAGGTGAATAGTGGGAAGTATCTCGGCCTGGTTTGGGACAACCCAGAGAAAACCATGTTTCGCATCCCATGGAAACATGCAGGAAAACAAGACTTTCGCAGTGAGGAAGATGCAGCTATTTTCAAGGCTTGGGCGGCGTTTAAAGGGAAGCTCATGGAAAATGGAAATTCGGACCCTGCGTCCTGGAAAACACGCCTTCGATGTGCCCTCAACAAAAGTCCAGAATTTAGTGAGGTCACAGAAAGGTCACAGCTGGATATTTCAGAACCCTACAAGGTGTATCGCCTTGTACCACCAGAAGAACAAGGAGTGGTTAAAGTTAAaaaagagaatggtcagaaatcAGTGAGAAACAGCAAGAGGAAACACAGCGAATCTGAGAATGAACAGGAGACTGAAGGCAAGAAGATCAAAGAGGAGATTGTTGCACCACAGGCCATCAACATG
>TCONS_00009094
tacagGTGTTACAATTATCGTAACTGGAGCTGTCATTGTATGATTCTTTTCAGATGGCATCTGGAAGGATACGCTCCACACGCCGTCTGCGTTCATGGATAGTAGAACAGGTGAATAGTGGGAAGTATCTCGGCCTGGTTTGGGACAACCCAGAGAAAACCATGTTTCGCATCCCATGGAAACATGCAGGAAAACAAGACTTTCGCAGTGAGGAAGATGCAGCTATTTTCAAGattattaattggcctaacGTTAACCGTGTGCGTGTGATCATTCTTTGATAATTACACACGGCTTGGGCGGCGTTTAAAGGGAAGCTCATGGAAAATGGAAATTCGGACCCTGCGTCCTGGAAAACACGCCTTCGATGTGCCCTCAACAAAAGTCCAGAATTTAGTGAGGTCACAGAAAGGTCACAGCTGGATATTTCAGAACCCTACAAGGTGTATCGCCTTGTACCACCAGAAGAACAAGGAGTGGTTAAAGTTAAaaaagagaatggtcagaaatcAGTGAGAAACAGCAAGAGGAAACACAGCGAATCTGAGAATGAACAGGAGACTGAAGGCAAGAAGATCAAAGAGGAGATTGTTGCACCACAGGCCATCAACATG

Function

symbol description
irf9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain and kidney. Human ortholog(s) of this gene implicated in immunodeficiency 65. Orthologous to human IRF9 (interferon regulatory factor 9).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002376 immune system process biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04217 Necroptosis
ko04621 NOD-like receptor signaling pathway
ko04625 C-type lectin receptor signaling pathway
ko04380 Osteoclast differentiation
ko05203 Viral carcinogenesis
ko05160 Hepatitis C
ko05171 Coronavirus disease - COVID-19
ko05164 Influenza A
ko05162 Measles
ko05168 Herpes simplex virus 1 infection
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05169 Epstein-Barr virus infection
ko05165 Human papillomavirus infection
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040912-165 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain and kidney. Human ortholog(s) of this gene implicated in immunodeficiency 65. Orthologous to human IRF9 (interferon regulatory factor 9).

Ensembl:

ensembl_id ENSDARG00000016457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009092 False 1767 mRNA 0.43 10 13282797 13306883
TCONS_00009093 False 538 mRNA 0.47 5 13282807 13292767
TCONS_00009094 True 614 nonsense_mediated_decay 0.45 5 13283774 13292767

Neighbor

gene id symbol gene type direction distance location
XLOC_004574 atp2a1l coding upstream 19139 13244149 ~ 13263658 (+)
XLOC_004573 ppp1cab coding upstream 59348 13205955 ~ 13223449 (+)
XLOC_004572 paqr4b coding upstream 105879 13164706 ~ 13176918 (+)
XLOC_004571 cmn coding upstream 118548 13118540 ~ 13164249 (+)
XLOC_004570 patl2 coding upstream 175834 13091842 ~ 13106963 (+)
XLOC_004576 psme2 coding downstream 12249 13319132 ~ 13331980 (+)
XLOC_004577 drosha coding downstream 38013 13344896 ~ 13390841 (+)
XLOC_004578 kcnh4b coding downstream 97901 13404784 ~ 13476088 (+)
XLOC_004579 BX649204.1 coding downstream 150354 13457237 ~ 13457356 (+)
XLOC_004580 oplah coding downstream 345478 13652361 ~ 13721912 (+)
XLOC_004569 BX548041.1 non-coding upstream 669346 12613335 ~ 12613451 (+)
XLOC_004568 NA non-coding upstream 866962 12415256 ~ 12415835 (+)
XLOC_004565 CR450852.1 non-coding upstream 1639126 11643551 ~ 11643671 (+)
XLOC_004556 CU459020.1 non-coding upstream 3071749 10210932 ~ 10211048 (+)
XLOC_004550 NA non-coding upstream 3332308 9941133 ~ 9950489 (+)
XLOC_004581 CR354395.1 non-coding downstream 351139 13658022 ~ 13658144 (+)
XLOC_004582 BX640453.1 non-coding downstream 433333 13740216 ~ 13742676 (+)
XLOC_004589 NA non-coding downstream 1434269 14741152 ~ 14744702 (+)
XLOC_004590 NA non-coding downstream 1508717 14815600 ~ 14815945 (+)

Expression


Co-expression Network