XLOC_004576 (psme2)


Basic Information

Item Value
gene id XLOC_004576
gene name psme2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13319132 ~ 13331980 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009095
GTGGCGctcaattttaattttattttttctctttatctTGTGTTCTGTCTCTGCTTTTACATAAACATAACGTTTAAGCTATTAATTGCTATTTGTGTTAATTATCAAGGCATTGGTTGAATGACGATTCCTTATTTCTTATAAAATTGTCATATTtctgtattaaataaaaacagatagAAATGGGTGTTGTAACATTTTCGACAGTAATATGGAAATGCATATTTTTGGTAGTTCACCGGTACTTACCCAGAGTCCTGACGTGAACCCAGTGGGCGTCGTTTAGAAATCGAAAGTATCGCGAAGGGAAATTTGTCATCTAAACGTCTGCGTCTCTCTGCTTGCGACCTGCTTCGCTTATTAAGACAAATTGCTTTCATTATGTCTAAAGCTAATGTACTGAAGCTAAACTCTGATAATGCAGTGAGGATAGAAAACTACCGCCAGTCACTGTATAAGCAGGCAGAAGACCTGTTCTCCAATTACATACCATTGAAGATCTCACACCTTGACAACCTGCTGAAGGGCGATGAGTTTAGTATCACTGACCTCTCATCTCTCCATGCACCCCTGGACATACCCATTCCTGATCCCCCTGCCCCAGAGGACGAGGAGATGGAGACAGATAAAAATGAAGATGATGAGAAAAAGAAGAAAGcTCCCAAGTGTGGTTTCATCAAAGGAAATGAAAGGATTGTGAAGTTACTTGACATTGTGAAACCAGAGATAATGGGTCTGAAGGAGACCTGTATCACTGTTTCTTGCTGGATTGCTCATCTGATTCCCAAAATTGAAGATGGAAATGACTTTGGAGTTGCAATTCAGGAAAAAATCCTTGAGAGGATTACTGCTGTGAAGACCAAAGTCGAGGGATTCCAGACCAACATTAACAAGTACTTCTCAGAAAGGGGTGATGCGGTGGCCAAAGCTTCCAAAGACACACATGTGATGGATTATCGCTCTCTAGTGCATGAGAAGGATGAAGCAGCATATTCTGAGATTAGGGTGATTGTGCTTGATATACGCGGTTTCTATGCGGAACTGTATGACGTCATCAGCAAGAACCTGGAGAAGGTGACGAATCCTAAAGGAGAAGAGAAGCCCTCCATGTACTGAAACGGATGTTTACCGGGACAGAAATAAACATGCAGTAGCACAACTTAGACCTGTTTTCAGACTTTCTAGAGATACATTACTGAAGTTAAATCAGTCAATCATACAGTGTGTTGTGGTACATATGATAAGATGATGTACAGCTCCATTTGCATTTATTTCAGCATATACAAAAAGTAAATCAGCAGAACTGACCAACAAATTTACAAACAGGACATGTTATTAAAGCAAACAACCACAATAAAAGCAACAGTTTCACAAAATATCCTGTTTCTTTATCCACACTTTCGGAATATATCATACCAAATTTTGTTAGAACTTAAAATTAATTCAAACACTaattcattgtatttgttttattgtaacatagaacaatgtttacaaaaatgtttCAGATGGGTTAAGTAATAAAAGAACTAATGTGGAAAACAAACATATGCTTGAAAACCTGACATGACGTTTCTTTCAGAGAACGAgaacttaaaatgtatatttttgaaaaGTCGCTACACATTTTTCAAACTTCTGGTCCTTCTCCTCCTGGAATCAGCtggaaaacaataaacaattggttatattatatttaaaatgaa

Function

symbol description
psme2 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME2 (proteasome activator subunit 2).

GO:

id name namespace
GO:0061136 regulation of proteasomal protein catabolic process biological_process
GO:0010950 positive regulation of endopeptidase activity biological_process
GO:2000045 regulation of G1/S transition of mitotic cell cycle biological_process
GO:0008537 proteasome activator complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061133 endopeptidase activator activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-991110-16 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME2 (proteasome activator subunit 2).

Ensembl:

ensembl_id ENSDARG00000033144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009095 True 1706 mRNA 0.37 11 13319132 13331980

Neighbor

gene id symbol gene type direction distance location
XLOC_004575 irf9 coding upstream 12249 13282797 ~ 13306883 (+)
XLOC_004574 atp2a1l coding upstream 55474 13244149 ~ 13263658 (+)
XLOC_004573 ppp1cab coding upstream 95683 13205955 ~ 13223449 (+)
XLOC_004572 paqr4b coding upstream 142214 13164706 ~ 13176918 (+)
XLOC_004571 cmn coding upstream 154883 13118540 ~ 13164249 (+)
XLOC_004577 drosha coding downstream 12916 13344896 ~ 13390841 (+)
XLOC_004578 kcnh4b coding downstream 72804 13404784 ~ 13476088 (+)
XLOC_004579 BX649204.1 coding downstream 125257 13457237 ~ 13457356 (+)
XLOC_004580 oplah coding downstream 320381 13652361 ~ 13721912 (+)
XLOC_004581 CR354395.1 coding downstream 326042 13658022 ~ 13658144 (+)
XLOC_004569 BX548041.1 non-coding upstream 705681 12613335 ~ 12613451 (+)
XLOC_004568 NA non-coding upstream 903297 12415256 ~ 12415835 (+)
XLOC_004565 CR450852.1 non-coding upstream 1675461 11643551 ~ 11643671 (+)
XLOC_004556 CU459020.1 non-coding upstream 3108084 10210932 ~ 10211048 (+)
XLOC_004550 NA non-coding upstream 3368643 9941133 ~ 9950489 (+)
XLOC_004582 BX640453.1 non-coding downstream 408236 13740216 ~ 13742676 (+)
XLOC_004589 NA non-coding downstream 1409172 14741152 ~ 14744702 (+)
XLOC_004590 NA non-coding downstream 1483620 14815600 ~ 14815945 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_01396868_01401498 PSME2 coding CI01000161 null 1396854 ~ 1401498 (-)