Fish Transcriptome and Expression Database

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model fish

XLOC_004565 (CR450852.1)

Basic Information

Item	Value
gene id	XLOC_004565
gene name	CR450852.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	11643551 ~ 11643671 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009076
agccacagccatgtcaccctgcaacCCAAGACTCACTtgctactcactgaagctaagcaggtgtgagcctggtcagtacctgtatgggagaccacatgggaaagcatggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080203

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00009076	True	121	rRNA	0.53	1	11643551	11643671

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_004564	si:rp71-19m20.1	coding	upstream	272260	11352630 ~ 11371291 (+)
XLOC_004563	vps35l	coding	upstream	444775	11167870 ~ 11198776 (+)
XLOC_004562	raraa	coding	upstream	486314	10952794 ~ 11157237 (+)
XLOC_004561	top2a	coding	upstream	903315	10706772 ~ 10740236 (+)
XLOC_004560	csf3a	coding	upstream	1006379	10631266 ~ 10637172 (+)
XLOC_004566	waplb	coding	downstream	6475	11650146 ~ 11763658 (+)
XLOC_004567	grid1b	coding	downstream	468713	12112384 ~ 12833736 (+)
XLOC_004568	NA	coding	downstream	771585	12415256 ~ 12415835 (+)
XLOC_004569	BX548041.1	coding	downstream	969664	12613335 ~ 12613451 (+)
XLOC_004570	patl2	coding	downstream	1448171	13091842 ~ 13106963 (+)
XLOC_004556	CU459020.1	non-coding	upstream	1432503	10210932 ~ 10211048 (+)
XLOC_004550	NA	non-coding	upstream	1693062	9941133 ~ 9950489 (+)
XLOC_004546	NA	non-coding	upstream	1831065	9797037 ~ 9812486 (+)
XLOC_004542	NA	non-coding	upstream	2193820	9443721 ~ 9449731 (+)
XLOC_004536	NA	non-coding	upstream	2672519	8968317 ~ 8971032 (+)
XLOC_004579	BX649204.1	non-coding	downstream	1813566	13457237 ~ 13457356 (+)
XLOC_004581	CR354395.1	non-coding	downstream	2014351	13658022 ~ 13658144 (+)
XLOC_004582	BX640453.1	non-coding	downstream	2096545	13740216 ~ 13742676 (+)

Expression

Co-expression Network