XLOC_004567 (grid1b)


Basic Information

Item Value
gene id XLOC_004567
gene name grid1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 12112384 ~ 12833736 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009078
CGCCGCGCGAGAGCGAGACCTGCGGAGACAACGCGCCGGATCCTGAAGCGACCGTTACCCTCCAACTGGCGACCTGCCTTTCTCCTTCCCGATTACCCTTACAGTGTTTCTCACACACTAGCCCTTTCCTTCAACGCCGCCACACTTTTTTGGTTTATCACAGGTGCATTTGCGCACCTTTGACGTACTTTTCTCACTCATTGGGAATTAACGGACATCTGAGGATCGTGTGGATGCGCGGCTTTGGAAAGACGCGAAGATGGAATTGCTGATAATATGCCTTTCTTTTGGAATATTGCAGTGCAGTTCGGCGGGAGCCGACTCCATCATTCACATCGGTGCCATTTTTGAGGAGAACGCGGCACGGGATGATGAGGTGTTTCAGTTGGCGATCTCTGACCTCAGCCTCAACGATGACATTTTGCAGAGCGAGAAAATCACCCACTCCATAAAATATATCGAGCCCAACAACCCCTTTCAGGCAGTGCAGGAAGCATGCGAACTGATGACGCAAGGTATCCTGGCTTTGGTCACGTCTACAGGCTGTGCTTCAGCCAGTGCTCTACAGTCCCTGACAGATGCCATGCACATACCACACCTTTACGTCCAGCGAAATGCTGAAGGATCACCCCGTACAGCTTGCCAGCTCAATCCAAGTCCTGACGGAGAACGATACACCCTTGCCGCACGACCGCCTGTCCGTCTAGGTGATGTCATGTTGACGCTAGTTGGTGAGCTGCGATGGCAAAAGTTCATCGTCTTCTATGACAGCGACTATGATATCCGCGGACTGCAGGTGTTTCTAGACCAGACATCAAGACAAGGTTTGGATGTGTCTTTGCAACGAGTGGACAGGAACATTAGCGGCGTGTTTTCCAGTTTGTTTACCTCGATGCGCACAGAGGAGCTGAACCGCTACAGGGACACTCTCAGAAGAGCTATCCTGCTTTTGAGTCCTCGTGGAGCCCAGGTCTTCATCCATCAGGCCGTGGAGACTAACCTGGCCTCCAAAGATAGTCACTGGGTGTTTGTGAACGAGGAGATCAGTGACACAGAGATCCTGGAGTTGGCTCACAGTTCCCTGGGAAGGATGACGGTTGTCAGGCAGATTTTTCCTCTGTGGAGGGACAGCAGTGTGAGCTGTATGAGGAACAGCCATCGCATCTCTTCACTGCTATGTGACCCTCAGGAGGGATATTTGCAGTCGCTGGAGGTGTCCAATCTGTACCTTTATGACAGCGTGTTGATGTTAGCCAACGCATTCTATCGGAAATTAGAAGACCGGAAATGGCACAGCATGGCCAGTCTTAACTGCATCAGGAAGTCCACAAAGCCATGGAATGGAGGCTGGTCAATGCTGGAGACAATCCAGAAGGGCCGTATAACTGGCCTCACCGGGATTATGGACTTCATGGAAAATGGATCAAATTCGCATGTTCAGTTTGAAATTTTGGGAACCAGCTTTAGCGAGACGTTTGGAAAAGACATAAAACGCTTAGCAACATGGGATTCGGTCCATGGTCTCAATGGAAGTCTAAAGGAGAGTCGCATTGAAAACGGCATGCAAGGGGTGACCGTGAAAGTGGTGACGTTGCTgGAGGATCCGTTTGTGATGGTGGCAGAGAACATCCTCGGGCAGCCAAAACGATACAAAGGATTCTCCATTGATGTCCTTGAGGCCTTGGCCAAGATCCTAGGGTTCAAGTATGATATCTACCAGGTGGCAGACAGCAAATATGGTTCTCAGCTGTCCAACGGCTCTTGGAATGGAATGATTGGGGAATTAATAAATAAGAGAGCTGATTTAGCAGTGTCTGCCATAACAATAACACCAGAGCGAGAGAATGTTGTGGACTTCAGCAAGCGCTACATGGATTACTCCGTTGGGATCCTACATCGCAAGCCTGAGGAAAAGATCAACATTTTCTCCTTGTTTGCTCCATTTGATTTGGCCGTGTGGGCCTGTATCGCAGCTGCCATTCCTGTGGTGGGCGTTCTGATCTTCTTGCTGACACGGATGCAGATGCTCCGCTCCCAGAATCCTCCAGGAGCCCATCACGCTTCATCCATGTCTAACTCGTTGCATAGTGCTATATGGATTGTCTACGGCGCCTTCGTACAACAAGGTGGAGACTCAGTGGTGGGGTCTGTGGCACTAAGGATAGTCATGGGGAGTTGGTGGTTATTCACACTAATTGTGTGTTCATCTTACACTGCAAACCTGGCTGCATTCCTGACTGTGTCCCGCATGGACAATACCATAAGAACATTTCAGGATCTTGCAAGGCAGATGGACTTTGCTTATGGCACTGTTAGAGACTCCGCCGTGTACGATTACTTTAAAGCCAAAGGCACAAACCCACTGGAGCAAGACAGCACATATGCAGAGCTGTGGAGGACAATCAGCAAAAATAACGGACAGGACTTCTCAGTTTCTAGCCCTTCTGAAGGCATACGCAAGGCCAAAAAAGGACCTTACGCATTTCTGTGGGACATGGCTGTGGTGGAATATGCAGCACTCACAGATGATGATTGTACCATCACTGTATCAGGCAACAGCATGAGCAGCAAAGGCTACGGCATCGCCATGCAGCATGGGAGTCCTTACCGAGACCTCATATCACAAAAGATTCTGGAGCTGCAGGAAAAAGGAGACCTGGATGTTTTGAAACAGAAGTGGTGGCCTCGGACAGGACGCTGTGACCTCAACAGCCACAGTAACGCCCAACCGGATGGTCGCTCGCTCAAGCTGCATAGCTTCGCCGGCGTCTTCTGCATCCTAGCAGCAGGACTCCTGCTGGCCTGTCTGGTGGCCGCTCTGGAAATGTGGTGGAACAGCAATCGCTGCCGGCAAGAGCAGCCCAAAGAGGTTACTAAGGATTACAGACTGGCAAGGGTTTCTGGTCCATTGACATATAATGATATTGCTACTGCTTCATCGGAGGGGAGCAAGGACATTTggacagacagagaaagagacTGGGATGAAGCAGAAGCTATTGACACAGGACAAGGAGGTGAACCTGGAACAGGTGCATCGGCGTTTGAACAGCCTTATGGACGAGGACATGGCACACAAGCAGATCCCCGCACCATCTATCGAGATCTCTGCCCTGGACATCGGCAGCATGCCGCCCAGCCAGCAGCGGGAGGCTGTGCGAGACTACCCGGGCACGGGCCTGTCTGTGAGCACCTTCCTCCCGGAGCAAGCTCATGGGGTGGGTCGGACACTGATCCAGGGTCCTGGCAGCACCCTGCCCCTTCCTCTCAGCAGCTCCACCATCCCCTCCATCCAATGCAAACACAGGGCTCCCAACGGGGGCCTGTTCCGACAGAGTCCCGGCAAGACACCCATGCCAATGTCCTACCAATCAGtaccaggaggacccatcccagAAGCTATTGAACATAGCACATCCATCTAATGCCATCGTCACCATGGGTTGCCTCATACTTGCTTTTCAAAGAAAGCTGAGGTGCGGTTTGAGCTTGAGAAACTGGAAAACTGTGGCGGTGTAAAAAGAGTTAAAAGGAAaagaagagtaaaaaaaaatacgtagtgatttttattatgaaatcaaaaaaataaaaacatggaaatcattgtttttcttgtacatatttgtaaatacTGAAAGAGCAAAGTAAGTAAAAGTGTATTTTGAATATTCTCAATTTTTGAAGTTGAGttacaaaaacaaatgaacaaaaaaaggACTTATAAAAATAATTCCAAACGACTGTTTGAATGGCTTTGTGAATTTTGTTCTCTATGGGTAAAGACTCAAATTCATTGTGATTGTTTTCTAAGTGCCGAAATAAAAGATGTCTCTCCACGTTTTGTTATTAGATGATCATACATGGCTGTAGGAACCCGAAAGCTGAGCGCTGATAATTATGCACCACTTTTACAGTCAGAAAACgtcttcaaacaaacaaacagtgagGCCATTTAAATTCTGATCCATTTTACGGTTTGTTTATTGATTACTGATGAAGCTTTATGTGTTTGAACtgagctgatgatgatgttaatGGATTTACAGAACAAGCAAATCTAATCATTTTAAATCTGAAATGACAAAAGCAGTGACGTGGAAATTCATCACAGGAAAACTGGAACTTTGTAATCATAGCA
>TCONS_00009080
GAAAATACCCTCATTATCTGGATATgtgatttgcatttttttttgtgtcctgcAGTTAGCAACATGGGATTCGGTCCATGGTCTCAATGGAAGTCTAAAGGAGAGTCGCATTGAAAACGGCATGCAAGGGGTGACCGTGAAAGTGGTGACGTTGCTgGAGGATCCGTTTGTGATGGTGGCAGAGAACATCCTCGGGCAGCCAAAACGATACAAAGGATTCTCCATTGATGTCCTTGAGGCCTTGGCCAAGATCCTAGGGTTCAAGTATGATATCTACCAGGTGGCAGACAGCAAATATGGTTCTCAGCTGTCCAACGGCTCTTGGAATGGAATGATTGGGGAATTAATAAATAAGAGAGCTGATTTAGCAGTGTCTGCCATAACAATAACACCAGAGCGAGAGAATGTTGTGGACTTCAGCAAGCGCTACATGGATTACTCCGTTGGGATCCTACATCGCAAGCCTGAGGAAAAGATCAACATTTTCTCCTTGTTTGCTCCATTTGATTTGGCCGTGTGGGCCTGTATCGCAGCTGCCATTCCTGTGGTGGGCGTTCTGATCTTCTTGCTGACACGGATGCAGATGCTCCGCTCCCAGAATCCTCCAGGAGCCCATCACGCTTCATCCATGTCTAACTCGTTGCATAGTGCTATATGGATTGTCTACGGCGCCTTCGTACAACAAGGTACTTCAATAAATTCTCCTCCGACAAGTCCATTCAAAGGCACCTTAAGAAACGACTTATCAGCtttgcatgtttttaaaagcagccAAGGGATCCGCTGATGATTTGACTCTTAGAAAGGCTTAGAAAGATGACAAGAATTAAGCTGCCTTCTGTTGATACTAGGGTGTCAATACATCATTCCTTCTAAGACACAGATGCAAGCATTGTTTAGCAGCTTAAAATATTTAgcgtttgtaaatatatatataaaagttaaactaaaaattacaatttattca

Function

symbol description
grid1b Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Orthologous to human GRID1 (glutamate ionotropic receptor delta type subunit 1).

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-84 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Orthologous to human GRID1 (glutamate ionotropic receptor delta type subunit 1).

Ensembl:

ensembl_id ENSDARG00000044161

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009078 False 4138 mRNA 0.48 17 12112384 12833736
TCONS_00009080 True 967 mRNA 0.44 3 12789853 12795214

Neighbor

gene id symbol gene type direction distance location
XLOC_004566 waplb coding upstream 348726 11650146 ~ 11763658 (+)
XLOC_004565 CR450852.1 coding upstream 468713 11643551 ~ 11643671 (+)
XLOC_004564 si:rp71-19m20.1 coding upstream 741093 11352630 ~ 11371291 (+)
XLOC_004563 vps35l coding upstream 913608 11167870 ~ 11198776 (+)
XLOC_004562 raraa coding upstream 955147 10952794 ~ 11157237 (+)
XLOC_004570 patl2 coding downstream 258106 13091842 ~ 13106963 (+)
XLOC_004571 cmn coding downstream 284804 13118540 ~ 13164249 (+)
XLOC_004572 paqr4b coding downstream 330970 13164706 ~ 13176918 (+)
XLOC_004573 ppp1cab coding downstream 372219 13205955 ~ 13223449 (+)
XLOC_004574 atp2a1l coding downstream 410413 13244149 ~ 13263658 (+)
XLOC_004556 CU459020.1 non-coding upstream 1901336 10210932 ~ 10211048 (+)
XLOC_004550 NA non-coding upstream 2161895 9941133 ~ 9950489 (+)
XLOC_004546 NA non-coding upstream 2299898 9797037 ~ 9812486 (+)
XLOC_004542 NA non-coding upstream 2662653 9443721 ~ 9449731 (+)
XLOC_004579 BX649204.1 non-coding downstream 623501 13457237 ~ 13457356 (+)
XLOC_004581 CR354395.1 non-coding downstream 824286 13658022 ~ 13658144 (+)
XLOC_004582 BX640453.1 non-coding downstream 906480 13740216 ~ 13742676 (+)
XLOC_004589 NA non-coding downstream 1907416 14741152 ~ 14744702 (+)
XLOC_004590 NA non-coding downstream 1981864 14815600 ~ 14815945 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002823 LOC105909129 coding CM030139.1 CM030139.1 3677642 ~ 3681292 (+)