XLOC_004582 (BX640453.1)


Basic Information

Item Value
gene id XLOC_004582
gene name BX640453.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13740216 ~ 13742676 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009107
aacaatctgttccaacattacacacacacaaaagccgtaATGAAGTTATTACGAGCGAGTAACATTTCGGCATTCCGTTAACGGAcgacaacaacattaaaatcattatgttaaatctctcaataaaacatttcctgattatttacctACGCCTTGTCTTTAGTCAAATggacaataatgtttttgaagttcagttttttccATATCCATAGTGATCAGTTAGTATGATACTTCATCACACGAGCCGacccactttttacaaaacacacaaaataacttttaaaaacaaaacacctctGTGCAGATTGCGTcccgttaaaggaacagttcactcaaaaatgaaatgtactcacgaattatttgccctgtaaataataagtgattccaaacctttaagtttctttattctgttgaacactaaagactgtaagcatttgctttcatggtaggaaaacactatggaattaaatagttacagttttccagctttatttaatacatcttctttattgtttagcagaaaaaaagctaaataagtttGGAACAAATAAAGAATGAGGCtaaaatggcagaattgtcagttttgggtgagctatccctataagttaaagtatataaattgaggttcatatgcctaattaatatagatagtaattaaaaggtctgctagtctaaatttctattttgatgggtcttttgatgttttatttaaaacccactcTTTTCTTTACTCAACAGGCTATTTTTACATGGAGaatgTTTTCAGCTGTTGAATTCACCTCAGATCAGTGTTGCTGTAATTCCTGATGGAAAGAAGAATTGAATGAGcgagcaacgccacaactacaggacctcttctcataatttacactggattatccgttgaatttgtttcttcctctgactgctttctccataccaacaactacgactggtcttcagctgcgctccccggtctgctgtattctccagtccagagcttcactgcccagtgtttgaattttaatttatatatttatttatatatttatttaccttttaatgatttcttgtttacttttcttgtttgtttaccctttagtttaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaactttattttatactgtttgcttataattagatactgtatgtgtactgtatttattaaatgttgtgaaatatataataaaaagtttgatattcatttgtgtggcatttttacactttaaagtttacacatgcagtttttaaattaaataggaaaaataaatgaacaatatttcatattaagcaatactggaaaagaattgctgcttatcctgtattctaggcagtaatgataaactgccacaaaaaaatatcaatacaagtagtaagaacgccgcctcgcggttgctgaatgtcgcacgacaacgttgctacagccttctcacgtcttacatttctacgttgtgacaatgtagcgagcacgtaagcggcaacgttgcctttgaaaaaatacaacgttgtgcagacatcgctacaacgtaaatgtgtttgttgggcGACCCTCatgatgtttaaatggcaaccttatgacatcgttgtgacaacctttagcaacaacgtagaatcctcaacctttttgcaATGTTGAtacaacgttgtaggaaggtcgctacgttgaggcaacgttgtgtgtttgttgggaatttttgttatgtttatttaaacGTTTCAATCTCTTCTGCATTGCTGTCTTCTGAGCGCATGCTATTTGATATGTAATTCACAACATgaagaaaatgatttttttctctttttcttttatttgatcaAGCCATACAAAATAAAACGAACATATACAGTCAAGGCC

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0051153 regulation of striated muscle cell differentiation biological_process
GO:0060142 regulation of syncytium formation by plasma membrane fusion biological_process
GO:0006413 translational initiation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0010830 regulation of myotube differentiation biological_process
GO:1901739 regulation of myoblast fusion biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009107 True 1897 lncRNA 0.33 4 13740216 13742676

Neighbor

gene id symbol gene type direction distance location
XLOC_004580 oplah coding upstream 18304 13652361 ~ 13721912 (+)
XLOC_004581 CR354395.1 coding upstream 82072 13658022 ~ 13658144 (+)
XLOC_004578 kcnh4b coding upstream 264128 13404784 ~ 13476088 (+)
XLOC_004579 BX649204.1 coding upstream 282860 13457237 ~ 13457356 (+)
XLOC_004577 drosha coding upstream 349375 13344896 ~ 13390841 (+)
XLOC_004583 ppp1r16a coding downstream 102 13742778 ~ 13789973 (+)
XLOC_004584 fkbp10b coding downstream 162610 13905286 ~ 13957037 (+)
XLOC_004585 GPT coding downstream 336421 14079097 ~ 14130716 (+)
XLOC_004586 kbtbd2 coding downstream 407010 14149686 ~ 14162781 (+)
XLOC_004587 mto1 coding downstream 472079 14214755 ~ 14309962 (+)
XLOC_004569 BX548041.1 non-coding upstream 1126765 12613335 ~ 12613451 (+)
XLOC_004568 NA non-coding upstream 1324381 12415256 ~ 12415835 (+)
XLOC_004565 CR450852.1 non-coding upstream 2096545 11643551 ~ 11643671 (+)
XLOC_004589 NA non-coding downstream 998476 14741152 ~ 14744702 (+)
XLOC_004590 NA non-coding downstream 1072924 14815600 ~ 14815945 (+)
XLOC_004593 NA non-coding downstream 1368729 15111405 ~ 15115431 (+)
XLOC_004597 CR749751.1 non-coding downstream 1639018 15381694 ~ 15381814 (+)
XLOC_004602 NA non-coding downstream 2161448 15904124 ~ 15925797 (+)

Expression


Co-expression Network