XLOC_004583 (ppp1r16a)


Basic Information

Item Value
gene id XLOC_004583
gene name ppp1r16a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13742778 ~ 13789973 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009109
CCCATGTTGTGTACATGAGACACAACGCAACGCTTGATCTTAGAACGCCTTTATTAAGAACTTTACAACACAAGACAATAGTTTTGTTTAAACAATGTGGATGCAAATGCTTACTGTCTGGCATGGTCATGGAATTCTCCACAGGGATCTATcgatataaattaatttaacgaATAGTGTATCAATAATTAAAGTCGAACATAATTGGTTAAACCTGACAAGCGCAGAGAAAAGTAACAGACACCACGTTGCAACGCTGTCAATTGCCATTTGCCACTTTGGAGGTCTGGGAAAGAGGTTACACCTGAAAAATTAACACTGGTAACTTTAGAAATTGAGgtgaaaatatatagtaaaatgtgaaaaaataacgTTTTTTTTCAGACCAAACCGGTCACTTAAAAAACTATTATTGCCCTTTAGCCGCATATTCTCCATTTGTGTTTCTGTGGCGATTCTCagtgtggtgtgtttgtgtgagagtagCGCCGACTGTCGGGATGCATCGAGCAAGTGGACGGACCGAAGGGCGCAGCGGATGTTATGGAGAGTAATATATTTCCCGTAAAAGCTGACGAAGGGGATTGAAGCGCCGTTAAACAACCATGAATGCACAGACTGATTTCAGCTGAAGcaacagGATTTTCACtcctataaaaaaaattcttaagaaTATGGTTCATCATTGGCTTTCATCTGCATCtctgcattatcctgctggatcTTGTGTTTGTTTGCAATTCTCATCAGACACTTGAACATTGgaactgcagatgtgaaggaGTCATCGAATGCGTATGATAGGAGACCAAAGACAATCCGACCAGAAGCCACAGTCCTTGTGGTGTACGACTGGATTGGGAACACTTTAAAAATCTTGACTTGAAAGATATGGCAGAGCATGGAGAGCTGCTAGCAGAAATGGCATCTATTGGGCGTCTTTCAGCCACAGAGCGCCTGAAGCAGGCGCAGAAGAGACGGGCACAGCAGCTCAAAGGCTGGGCTCAGATGGAGAAGGACAGTGCCCGTGGTCACAAGGCCGACCACAAGGGAGATGGGGTGAAGAAAAGCAGAAGGGTGACCTTTAACTCCAATGTGATGCTGTTGGAGGCTGCTGCCAGGAATGATATCGAGGAGGTAAGACAGTTGCTGAATAATGGAGTCAGTCCAGACCTTTTCAACGAGGATGGGCTCACTGCTCTACATCAGAGCTGCATAGATGATTTTTTGGAGGTAGCACGCTGTCTTCTGGATGCAGGTGCAAATGTGAATGCGTGTGACAGTGAGCTGTGGACCCCTTTACATGCAGCGGCCACCTGTGGACATACTGACCTTGTCCAGATGCTGATAGAAGCGGGTGCAGATCTGTTGGCGGTGAATGCAGATGGAAACATGCCATATGATCTGTGTGAGGATGAGGCTACGTTAGAGCTCATCGAGATGATCATGGCAGAGCAAGGGATTACTCAGGAGAAAATTGACGAATGCCGTGGAGCCAAGGAGAGGGTGATGCTCACTGACCTTCGAGAGATGGTAACAAATGGAGCTGATCTGAATGTGAAGGATGAGCAGGGAGCAACTATGTTGCATGTAGCAGCTGCTAATGGATACATGTCAGTCGGGGAGCTGTTGCTTGAGCACAGGTTGTCTCCTGATGAGAGAGATGCTGATGGCTGGACACCACTCCATGCTGCCGCCTGCTGGGGACAGATCCAGATGGTGGAGCTGCTGGTGGCTCATGGTGCAAGTTTAAATGCCAAGTCTGAGTTGGATGAGACACCTCTGGATGTGTGCACTGATGAGGAGGTCCGGGCCAAAATGATGGAGTTGAAACATAAACATGATGCCATTATGAAGGGTCAGGACAAACACAAGAACACATTGCAGAGACGGGTGTCCAGCACTGGCAGCAGAGGAAAAGTAGTGAGGCGCAGCAGTGTGAATGAGCGTAGCAGTCTCTACCGTAGAGAGCATCAGAAGGAAGCCAAGGTGTGGCAGGAGAGAGGAAGACAAACAGAAGCCTTGGATGATGAtgaagacagacaaacagatgcaGAATTAAACCTGCATGCTTCACTGATGTCCAGCTCTAATGCCATCGCTGTTCCTCCATTAGACGTTGGCGAGGTGGAAAATGGAGCCCAAGTTATAGGGAACGGTAGCACAGGTTCATTTTCAGGAGAACTCCAGAGCGGGGGGCTCATGGATCGCAGCGCCTCCTATCAGCTCTCTCCAGGTTCAGCTTCTGCTGGCGGGGACAGCATGAGCAGAGAGAGATCTCACCACACACTCGCAGATCTCAAACGACAGAGAGCTGCAGCTAAACTGAATAAGCATCCAGCACCACCTTTACCCTTGTCTGCAGGCACACAGGATGAGCCTGTCCCTGAGGGGCCTCCAGGGACGCTGGAGCCCTCCGAATCAGTACAACAGGTTGTAGCTCCTAATGCTGTGTACTTTACCCAGGCTAGTGGAGATCCACCTCTGCTGAAGCTCAAAGCACCAGAAGAGGAAACAACCAATACAAAAGAGCCATGCTGTGGACTCATGTAGAAGCAGCAAATGAACAGATTTGGTTTCTTATGATTTTGCTGTTCTTTCTACATTAACAGAATGGAAAGTGTCTGGCAG
>TCONS_00009108
CCCATGTTGTGTACATGAGACACAACGCAACGCTTGATCTTAGAACGCCTTTATTAAGAACTTTACAACACAAGACAATAGTTTTGTTTAAACAATGTGGATGCAAATGCTTACTGTCTGGCATGGTCATGGAATTCTCCACAGGGATCTATcgatataaattaatttaacgaATAGTGTATCAATAATTAAAGTCGAACATAATTGGTTAAACCTGACAAGCGCAGAGAAAAGTAACAGACACCACGTTGCAACGCTGTCAATTGCCATTTGCCACTTTGGAGGTCTGGGAAAGAGGTTACACCTGAAAAATTAACACTGGTAACTTTAGAAATTGAGtgtggtgtgtttgtgtgagagtagCGCCGACTGTCGGGATGCATCGAGCAAGTGGACGGACCGAAGGGCGCAGCGGATGTTATGGAGAGTAATATATTTCCCGTAAAAGCTGACGAAGGGGATTGAAGCGCCGTTAAACAACCATGAATGCACAGACTGATTTCAGCTGAAGcaacagGATTTTCACtcctataaaaaaaattcttaagaaTATGGTTCATCATTGGCTTTCATCTGCATCtctgcattatcctgctggatcTTGTGTTTGTTTGCAATTCTCATCAGACACTTGAACATTGgaactgcagatgtgaaggaGTCATCGAATGCGTATGATAGGAGACCAAAGACAATCCGACCAGAAGCCACAGTCCTTGTGGTGTACGACTGGATTGGGAACACTTTAAAAATCTTGACTTGAAAGATATGGCAGAGCATGGAGAGCTGCTAGCAGAAATGGCATCTATTGGGCGTCTTTCAGCCACAGAGCGCCTGAAGCAGGCGCAGAAGAGACGGGCACAGCAGCTCAAAGGCTGGGCTCAGATGGAGAAGGACAGTGCCCGTGGTCACAAGGCCGACCACAAGGGAGATGGGGTGAAGAAAAGCAGAAGGGTGACCTTTAACTCCAATGTGATGCTGTTGGAGGCTGCTGCCAGGAATGATATCGAGGAGGTAAGACAGTTGCTGAATAATGGAGTCAGTCCAGACCTTTTCAACGAGGATGGGCTCACTGCTCTACATCAGAGCTGCATAGATGATTTTTTGGAGGTAGCACGCTGTCTTCTGGATGCAGGTGCAAATGTGAATGCGTGTGACAGTGAGCTGTGGACCCCTTTACATGCAGCGGCCACCTGTGGACATACTGACCTTGTCCAGATGCTGATAGAAGCGGGTGCAGATCTGTTGGCGGTGAATGCAGATGGAAACATGCCATATGATCTGTGTGAGGATGAGGCTACGTTAGAGCTCATCGAGATGATCATGGCAGAGCAAGGGATTACTCAGGAGAAAATTGACGAATGCCGTGGAGCCAAGGAGAGGGTGATGCTCACTGACCTTCGAGAGATGGTAACAAATGGAGCTGATCTGAATGTGAAGGATGAGCAGGGAGCAACTATGTTGCATGTAGCAGCTGCTAATGGATACATGTCAGTCGGGGAGCTGTTGCTTGAGCACAGGTTGTCTCCTGATGAGAGAGATGCTGATGGCTGGACACCACTCCATGCTGCCGCCTGCTGGGGACAGATCCAGATGGTGGAGCTGCTGGTGGCTCATGGTGCAAGTTTAAATGCCAAGTCTGAGTTGGATGAGACACCTCTGGATGTGTGCACTGATGAGGAGGTCCGGGCCAAAATGATGGAGTTGAAACATAAACATGATGCCATTATGAAGGGTCAGGACAAACACAAGAACACATTGCAGAGACGGGTGTCCAGCACTGGCAGCAGAGGAAAAGTAGTGAGGCGCAGCAGTGTGAATGAGCGTAGCAGTCTCTACCGTAGAGAGCATCAGAAGGAAGCCAAGGTGTGGCAGGAGAGAGGAAGACAAACAGAAGCCTTGGATGATGAtgaagacagacaaacagatgcaGAATTAAACCTGCATGCTTCACTGATGTCCAGCTCTAATGCCATCGCTGTTCCTCCATTAGACGTTGGCGAGGTGGAAAATGGAGCCCAAGTTATAGGGAACGGTAGCACAGGTTCATTTTCAGGAGAACTCCAGAGCGGGGGGCTCATGGATCGCAGCGCCTCCTATCAGCTCTCTCCAGGTTCAGCTTCTGCTGGCGGGGACAGCATGAGCAGAGAGAGATCTCACCACACACTCGCAGATCTCAAACGACAGAGAGCTGCAGCTAAACTGAATAAGCATCCAGCACCACCTTTACCCTTGTCTGCAGGCACACAGGATGAGCCTGTCCCTGAGGGGCCTCCAGGGACGCTGGAGCCCTCCGAATCAGTACAACAGGTTGTAGCTCCTAATGCTGTGTACTTTACCCAGGCTAGTGGAGATCCACCTCTGCTGAAGCTCAAAGCACCAGAAGAGGAAACAACCAATACAAAAGAGCCATGCTGTGGACTCATGTAGAAGCAGCAAATGAACAGATTTGGTTTCTTATGATTTTGCTGTTCTTTCTACATTAACAGAATGGAAAGTGTCTGGCAG
>TCONS_00009110
AGTGTATCAATAATTAAAGTCGAACATAATTGGTTAAACCTGACAAGCGCAGAGAAAAGTAACAGACACCACGTTGCAACGCTGTCAATTGCCATTTGCCACTTTGGAGGTCTGGGAAAGAGGTTACACCTGAAAAATTAACACTGtgtggtgtgtttgtgtgagagtagCGCCGACTGTCGGGATGCATCGAGCAAGTGGACGGACCGAAGGGCGCAGCGGATGTTATGGAGAGTAATATATTTCCCGTAAAAGCTGACGAAGGGGATTGAAGCGCCGTTAAACAACCATGAATGCACAGACTGATTTCAGCTGAAGcaacagGATTTTCACtcctataaaaaaaattcttaagaaTATGGTTCATCATTGGCTTTCATCTGCATCtctgcattatcctgctggatcTTGTGTTTGTTTGCAATTCTCATCAGACACTTGAACATTGgaactgcagatgtgaaggaGTCATCGAATGCGTATGATAGGAGACCAAAGACAATCCGACCAGAAGCCACAGTCCTTGTGGTGTACGACTGGATTGGGAACACTTTAAAAATCTTGACTTGAAAGATATGGCAGAGCATGGAGAGCTGCTAGCAGAAATGGCATCTATTGGGCGTCTTTCAGCCACAGAGCGCCTGAAGCAGGCGCAGAAGAGACGGGCACAGCAGCTCAAAGGCTGGGCTCAGATGGAGAAGGACAGTGCCCGTGGTCACAAGGCCGACCACAAGGGAGATGGGGTGAAGAAAAGCAGAAGGGTGACCTTTAACTCCAATGTGATGCTGTTGGAGGCTGCTGCCAGGAATGATATCGAGGAGGTAAGACAGTTGCTGAATAATGGAGTCAGTCCAGACCTTTTCAACGAGGATGGGCTCACTGCTCTACATCAGAGCTGCATAGATGATTTTTTGGAGGTAGCACGCTGTCTTCTGGATGCAGGTGCAAATGTGAATGCGTGTGACAGTGAGCTGTGGACCCCTTTACATGCAGCGGCCACCTGTGGACATACTGACCTTGTCCAGATGCTGATAGAAGCGGGTGCAGATCTGTTGGCGGTGAATGCAGATGGAAACATGCCATATGATCTGTGTGAGGATGAGGCTACGTTAGAGCTCATCGAGATGATCATGGCAGAGCAAGGGATTACTCAGGAGAAAATTGACGAATGCCGTGGAGCCAAGGAGAGGGTGATGCTCACTGACCTTCGAGAGATGGTAACAAATGGAGCTGATCTGAATGTGAAGGATGAGCAGGGAGCAACTATGTTGCATGTAGCAGCTGCTAATGGATACATGTCAGTCGGGGAGCTGTTGCTTGAGCACAGGTTGTCTCCTGATGAGAGAGATGCTGATGGCTGGACACCACTCCATGCTGCCGCCTGCTGGGGACAGATCCAGATGGTGGAGCTGCTGGTGGCTCATGGTGCAAGTTTAAATGCCAAGTCTGAGTTGGATGAGACACCTCTGGATGTGTGCACTGATGAGGAGGTCCGGGCCAAAATGATGGAGTTGAAACATAAACATGATGCCATTATGAAGGGTCAGGACAAACACAAGAACACATTGCAGAGACGGGTGTCCAGCACTGGCAGCAGAGGAAAAGTAGTGAGGCGCAGCAGTGTGAATGAGCGTAGCAGTCTCTACCGTAGAGAGCATCAGAAGGAAGCCAAGGTGTGGCAGGAGAGAGGAAGACAAACAGAAGCCTTGGATGATGAtgaagacagacaaacagatgcaGAATTAAACCTGCATGCTTCACTGATGTCCAGCTCTAATGCCATCGCTGTTCCTCCATTAGACGTTGGCGAGGTGGAAAATGGAGCCCAAGTTATAGGGAACGGTAGCACAGGTTCATTTTCAGGAGAACTCCAGAGCGGGGGGCTCATGGATCGCAGCGCCTCCTATCAGCTCTCTCCAGGTTCAGCTTCTGCTGGCGGGGACAGCATGAGCAGAGAGAGATCTCACCACACACTCGCAGATCTCAAACGACAGAGAGCTGCAGCTAAACTGAATAAGCATCCAGCACCACCTTTACCCTTGTCTGCAGGCACACAGGATGAGCCTGTCCCTGAGGGGCCTCCAGGGACGCTGGAGCCCTCCGAATCAGTACAACAGGTTGTAGCTCCTAATGCTGTGTACTTTACCCAGGCTAGTGGAGATCCACCTCTGCTGAAGCTCAAAGCACCAGAAGAGGAAACAACCAATACAAAAGAGCCATGCTGTGGACTCATGTAGAAGCAGCAAATGAACAGATTTGGTTTCTTATGATTTTGCTGTTCTTTCTACATTAACAGAATGGAAAGTGTCTGGCAGGTACGTGGAATTCAGTTTTATATCTTACACTTTGTCTGACTATTGCACATGAATGTTTTTTCAACACTAATAtattattacatgtatatttCATAACACTAAGAAATGTATGATGGACCAGACAGATTTCTGACTGAATATCGCAAATGTGAAGAAGTTAGAAGTTCCCGCATTTGCAAAACTTTCATGGAGTAATTGCAATGTTTTTGCAGTATTTCACACTATTATGCTTgtattgtttcttttatttagttGTTGTGGTCATTTAAAGTTTCATAGTATTGGCAATGTTCAAtacattgagaaaaaaaagacacTGAGCACTTTTGACCAAACTTTCTGCAATTTTCTTAactttaacacacatacacacatatacagtatatagattaatgtgacaaaaaaagcacatttgaGTTGCACTGATCACTATAAAACCACATTTCATGTATTTTAAAGGCTGCGTCTAGAAAGTACCATAGCACACTTGCTCTTGGGGTGTGGGCACACCTGGCACATTTGGTttgattaaaacaagcttaatacAAAATCGAGAGTTTCACCAAACAGACAGACTTGGGCCACTAGGAGAGTCCTGGTTAGCTTCCAAACAAACTAGTTCGGTTTGACTGAAATGTCCACTTAGCATCAACTTAAGATCTGAAAATGAATCAGAAACAGGTTGTGAAGTCACAATCACTTGATTTAATGCAGAAAAAACTGTTTATCTTACAAAAAGGGGGAATGGCATATCCTGGCAACCATCTATTAAACACAAGCGTGCTTGGTGGACAAATAAGAAAGTCTTTGAAATTAAGCTTAAAGGTTTGATATTAATAGGTTCAATCGTATCTAAAAGAACAATGTCAATGCATAGTGAGCTGGATTAAAtgcataattttcttttttggaacAAATCAACTAAGAGAACCAAACTACAAGTGTGAACACATTCTTAGTCTTCTTCAACACCTGGTTGAATCATTTCATATCTCTTTCATCTGGCTTTGTCTTTTTGGtgtttaccataaaataaaatgctgaaaGATTGTTATTTTAGTGAGtgcaaatcattgtttattttatattgcttaCCTTTCCTTAAATGTTTATATCCCAGATTATGTCGtggataatattttaatttatttaaaacatgcataaaatgttgtctcaATGTAACTAAATGTATGTCGTAAAAGACACTTTACTGTACATTGGAGTGCTTATTGTAATCTAAGAAATAAAATGGGATTGTATTTTACACCTTAAACTGTGCTGAAGCATCACAATTTAAAAGGCTATTTTATacaagtatattcttctgatttCAAATGATTTCTTATTGAATAAGGAAAAAATATGCAGACCATacatttttgaatttttaaaaagttttttatagtGAGAAACTAAGTagacttaaataaaaaaacaacaattttgtaTCTATATTCAGGAAATGTGGttaatttcagttaatttttttttaattttaaagatgtatacaaaagtcttgtcgtcgatcccagttgtaggaacaaca

Function

symbol description
ppp1r16a Predicted to enable myosin phosphatase regulator activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of protein dephosphorylation. Predicted to be active in plasma membrane. Orthologous to human PPP1R16A (protein phosphatase 1 regulatory subunit 16A).

GO:

id name namespace
GO:0035304 regulation of protein dephosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0017020 myosin phosphatase regulator activity molecular_function
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-121214-252 Predicted to enable myosin phosphatase regulator activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of protein dephosphorylation. Predicted to be active in plasma membrane. Orthologous to human PPP1R16A (protein phosphatase 1 regulatory subunit 16A).

Ensembl:

ensembl_id ENSDARG00000076980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009109 False 2631 mRNA 0.47 11 13742778 13788427
TCONS_00009108 False 2508 mRNA 0.48 12 13742778 13788427
TCONS_00009110 True 3861 mRNA 0.42 12 13742953 13789973

Neighbor

gene id symbol gene type direction distance location
XLOC_004582 BX640453.1 coding upstream 102 13740216 ~ 13742676 (+)
XLOC_004580 oplah coding upstream 20866 13652361 ~ 13721912 (+)
XLOC_004581 CR354395.1 coding upstream 84634 13658022 ~ 13658144 (+)
XLOC_004578 kcnh4b coding upstream 266690 13404784 ~ 13476088 (+)
XLOC_004579 BX649204.1 coding upstream 285422 13457237 ~ 13457356 (+)
XLOC_004584 fkbp10b coding downstream 115313 13905286 ~ 13957037 (+)
XLOC_004585 GPT coding downstream 289124 14079097 ~ 14130716 (+)
XLOC_004586 kbtbd2 coding downstream 359713 14149686 ~ 14162781 (+)
XLOC_004587 mto1 coding downstream 424782 14214755 ~ 14309962 (+)
XLOC_004588 becn1 coding downstream 766119 14556092 ~ 14703429 (+)
XLOC_004569 BX548041.1 non-coding upstream 1129327 12613335 ~ 12613451 (+)
XLOC_004568 NA non-coding upstream 1326943 12415256 ~ 12415835 (+)
XLOC_004589 NA non-coding downstream 951179 14741152 ~ 14744702 (+)
XLOC_004590 NA non-coding downstream 1025627 14815600 ~ 14815945 (+)
XLOC_004593 NA non-coding downstream 1321432 15111405 ~ 15115431 (+)
XLOC_004597 CR749751.1 non-coding downstream 1591721 15381694 ~ 15381814 (+)
XLOC_004602 NA non-coding downstream 2114151 15904124 ~ 15925797 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_01158992_01169436 PPP1R16A coding CI01000161 null 1157458 ~ 1169436 (-)