Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009092 |
| length | 1767 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 10 |
| gene id | XLOC_004575 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 13282797 ~ 13306883 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ko04630 | JAK-STAT signaling pathway |
| ko04217 | Necroptosis |
| ko04621 | NOD-like receptor signaling pathway |
| ko04625 | C-type lectin receptor signaling pathway |
| ko04380 | Osteoclast differentiation |
| ko05203 | Viral carcinogenesis |
| ko05160 | Hepatitis C |
| ko05171 | Coronavirus disease - COVID-19 |
| ko05164 | Influenza A |
| ko05162 | Measles |
| ko05168 | Herpes simplex virus 1 infection |
| ko05167 | Kaposi sarcoma-associated herpesvirus infection |
| ko05169 | Epstein-Barr virus infection |
| ko05165 | Human papillomavirus infection |
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-040912-165 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain and kidney. Human ortholog(s) of this gene implicated in immunodeficiency 65. Orthologous to human IRF9 (interferon regulatory factor 9). |
| ensembl_id | ENSDART00000137757 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009084 | lncRNA | upstream | 187127 | 13094316 ~ 13095670 (+) | True | XLOC_004570 |
| TCONS_00010724 | lncRNA | upstream | 866962 | 12415256 ~ 12415835 (+) | True | XLOC_004568 |
| TCONS_00009075 | lncRNA | upstream | 1919736 | 11359201 ~ 11363061 (+) | True | XLOC_004564 |
| TCONS_00009063 | lncRNA | upstream | 2833966 | 10448242 ~ 10448831 (+) | True | XLOC_004558 |
| TCONS_00009058 | lncRNA | upstream | 3115320 | 10163641 ~ 10167477 (+) | True | XLOC_004554 |
| TCONS_00009098 | lncRNA | downstream | 45378 | 13352261 ~ 13355576 (+) | True | XLOC_004577 |
| TCONS_00009105 | lncRNA | downstream | 348827 | 13655710 ~ 13721912 (+) | True | XLOC_004580 |
| TCONS_00009107 | lncRNA | downstream | 433333 | 13740216 ~ 13742676 (+) | True | XLOC_004582 |
| TCONS_00010898 | lncRNA | downstream | 780532 | 14087415 ~ 14130458 (+) | False | XLOC_004585 |
| TCONS_00010899 | lncRNA | downstream | 1434269 | 14741152 ~ 14744702 (+) | False | XLOC_004589 |
| TCONS_00009089 | mRNA | upstream | 19139 | 13244149 ~ 13263658 (+) | False | XLOC_004574 |
| TCONS_00009090 | mRNA | upstream | 21052 | 13244184 ~ 13261745 (+) | False | XLOC_004574 |
| TCONS_00009091 | mRNA | upstream | 21052 | 13256415 ~ 13261745 (+) | True | XLOC_004574 |
| TCONS_00009088 | mRNA | upstream | 59348 | 13205955 ~ 13223449 (+) | True | XLOC_004573 |
| TCONS_00009087 | mRNA | upstream | 105879 | 13164706 ~ 13176918 (+) | True | XLOC_004572 |
| TCONS_00009095 | mRNA | downstream | 12249 | 13319132 ~ 13331980 (+) | True | XLOC_004576 |
| TCONS_00009096 | mRNA | downstream | 38013 | 13344896 ~ 13389784 (+) | False | XLOC_004577 |
| TCONS_00009097 | mRNA | downstream | 42035 | 13348918 ~ 13390841 (+) | False | XLOC_004577 |
| TCONS_00009099 | mRNA | downstream | 97901 | 13404784 ~ 13468339 (+) | False | XLOC_004578 |
| TCONS_00009100 | mRNA | downstream | 98562 | 13405445 ~ 13476088 (+) | True | XLOC_004578 |
| TCONS_00009079 | other | upstream | 669346 | 12613335 ~ 12613451 (+) | True | XLOC_004569 |
| TCONS_00009076 | other | upstream | 1639126 | 11643551 ~ 11643671 (+) | True | XLOC_004565 |
| TCONS_00009060 | other | upstream | 3071749 | 10210932 ~ 10211048 (+) | True | XLOC_004556 |
| TCONS_00009055 | other | upstream | 3136986 | 10134366 ~ 10145811 (+) | False | XLOC_004553 |
| TCONS_00009019 | other | upstream | 5550147 | 7732534 ~ 7732650 (+) | True | XLOC_004523 |
| TCONS_00009101 | other | downstream | 150354 | 13457237 ~ 13457356 (+) | True | XLOC_004579 |
| TCONS_00009106 | other | downstream | 351139 | 13658022 ~ 13658144 (+) | True | XLOC_004581 |
| TCONS_00009115 | other | downstream | 795221 | 14102104 ~ 14103806 (+) | True | XLOC_004585 |
| TCONS_00009129 | other | downstream | 2074811 | 15381694 ~ 15381814 (+) | True | XLOC_004597 |
| TCONS_00009153 | other | downstream | 3653810 | 16960693 ~ 16960781 (+) | True | XLOC_004618 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000161_01414713_01425268.mRNA | True | 1189 | mRNA | 0.48 | 6 | CI01000161 | 1414652 ~ 1425268 (-) |
