LOC120562915 (cthrc1)


Basic Information

Item Value
gene id LOC120562915
gene name cthrc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 2201538 ~ 2207789 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806863.1
tggtcaATACATAGTGATATTTGATGTGTTTCCATATCTCCTTGCTGTACTCTACTGCTTCTACAGCCCATATGAATATCACAGAGAAGTTGTGAGTGTGTTCTTCCTCAGGGAGTTTTCTGTAAGTTGACTGGCTCCTTCCTTCTTGTCCTGCCCTCCTCTGGACTCAAAGTGTCTGGAGTTGGAGTCAAACCGTCGCCTCTCAGCTCTCTCCCAGAGCGCACACAGCCGTCTCTTGTATGATGTCTCCTCTCGTTGTCCGCCTGCTGCTTCTTGTCTGCTTGGCTTCACCTCTTTATGGCGTGGAAAAGGTGAGAACTAGAGGATACCGAAAGGATCCTGACGCGGACAAGTATGGCAGTTGCATGCAGGGGCCAGCAGGCCCCACTGGCAGAGAGGGTAACCCTGGCACCAACGGCATCCCGGGGACGCCGGGTATCCCTGGCCGTGACGGACTCAAAGGGGAGAAAGGCGAGTGCATTAACGAGATCTTCGAGGAGCCCTGGAGGCCCAACTACAAGCAGTGTGCCTGGAACTCTCTCAATTATGGGATCGACCTGGGTAAAGTAGCTGACTGTACGTTCACCAAGCTGCGTTCAGACAGCTCCCTCAGAGTCCTCTTCAGCGGTTCCCTCAGACTCAAGTGTAAAAACGCATGCTGCCAGAGGTGGTACTTCACCTTCAATGGAGCAGAGTGCACAGGACCCCTGCCCATAGAGTCCATCATCTACTTAGACCAAGGAAGTCCTGAGCTCAACTCAACCATCAACATCCACAGAACATCCTCAGtTGAAGGGCTGTGTGAGGGTGTCAAAGCAGGCTTGGTGGATGTGGCCGTGTGGGTGGGGACCTGTGCCGACTATCCCAGAGGGGACGCATCTACAGGCTGGAATTCAGTATCCAGGATTATCATCGAGGAACTGCccaaataaatacaaagttACATGTAAGGGAGGGCCCAGTCCTGGTAGTATGACAGTATGTCATCTGGCCCTCCAAAACGATCAGGTGCGGTTTGCTGAGGCGTCACAGCATCACTGATGGTAACttgaatgtttggttttttattgtgtttaaatACTATCCTAGTTTACAGGTCTAGAAACAAGAATACTGTGTCATTCTGTCTACCAGAAATAAACTTTGTACTGTAGCTTTTCTGCTTATGGGTGCTGTTGGTATACGGTAACTATTTAACAGACATTGTGACAAGACCGATAATATTTAAACTATGTACTCATGTGACATGTTTATATCCATTATTACTGTTAATAaagtcatcttttttttttttttttttttaagaatttaacTTTATGACCACTTGTTATGTTTAGAAGCTTTGGAATACCCTGCACTCAATTCAATGTAGTCACAAAGTAATACATGTAATGTATTTATACACTATCAAACATGACAATGCAGATAAAGCAGTTTGGATTTTATAAGAAAATCTTATAAAGCTATGTagttacatactgtatttttggAAACAAA
>XM_039806864.1
ctggtcaATACATAGTGATATTTGATGTGTTTCCATATCTCCTTGCTGTACTCTACTGCTTCTACAGCCCATATGAATATCACAGAGAAGTTGTGAGTGTGTTCTTCCTCAGGGAGTTTTCTGTAAGTTGACTGGCTCCTTCCTTCTTGTCCTGCCCTCCTCTGGACTCAAAGTGTCTGGAGTTGGAGTCAAACCGTCGCCTCTCAGCTCTCTCCCAGAGCGCACACAGCCGTCTCTTGTATGATGTCTCCTCTCGTTGTCCGCCTGCTGCTTCTTGTCTGCTTGGCTTCACCTCTTTATGGCGTGGAAAAGTATGGCAGTTGCATGCAGGGGCCAGCAGGCCCCACTGGCAGAGAGGGTAACCCTGGCACCAACGGCATCCCGGGGACGCCGGGTATCCCTGGCCGTGACGGACTCAAAGGGGAGAAAGGCGAGTGCATTAACGAGATCTTCGAGGAGCCCTGGAGGCCCAACTACAAGCAGTGTGCCTGGAACTCTCTCAATTATGGGATCGACCTGGGTAAAGTAGCTGACTGTACGTTCACCAAGCTGCGTTCAGACAGCTCCCTCAGAGTCCTCTTCAGCGGTTCCCTCAGACTCAAGTGTAAAAACGCATGCTGCCAGAGGTGGTACTTCACCTTCAATGGAGCAGAGTGCACAGGACCCCTGCCCATAGAGTCCATCATCTACTTAGACCAAGGAAGTCCTGAGCTCAACTCAACCATCAACATCCACAGAACATCCTCAGtTGAAGGGCTGTGTGAGGGTGTCAAAGCAGGCTTGGTGGATGTGGCCGTGTGGGTGGGGACCTGTGCCGACTATCCCAGAGGGGACGCATCTACAGGCTGGAATTCAGTATCCAGGATTATCATCGAGGAACTGCccaaataaatacaaagttACATGTAAGGGAGGGCCCAGTCCTGGTAGTATGACAGTATGTCATCTGGCCCTCCAAAACGATCAGGTGCGGTTTGCTGAGGCGTCACAGCATCACTGATGGTAACttgaatgtttggttttttattgtgtttaaatACTATCCTAGTTTACAGGTCTAGAAACAAGAATACTGTGTCATTCTGTCTACCAGAAATAAACTTTGTACTGTAGCTTTTCTGCTTATGGGTGCTGTTGGTATACGGTAACTATTTAACAGACATTGTGACAAGACCGATAATATTTAAACTATGTACTCATGTGACATGTTTATATCCATTATTACTGTTAATAaagtcatcttttttttttttttttttttaagaatttaacTTTATGACCACTTGTTATGTTTAGAAGCTTTGGAATACCCTGCACTCAATTCAATGTAGTCACAAAGTAATACATGTAATGTATTTATACACTATCAAACATGACAATGCAGATAAAGCAGTTTGGATTTTATAAGAAAATCTTATAAAGCTATGTagttacatactgtatttttggAAACAAA
>XM_039806865.1
cgcccctggtcaATACATAGTGATATTTGATGTGTTTCCATATCTCCTTGCTGTACTCTACTGCTTCTACAGCCCATATGAATATCACAGAGAAGTTGTGAGTGTGTTCTTCCTCAGGGAGTTTTCTGTAAGTTGACTGGCTCCTTCCTTCTTGTCCTGCCCTCCTCTGGACTCAAAGTGTCTGGAGTTGGAGTCAAACCGTCGCCTCTCAGCTCTCTCCCAGAGCGCACACAGCCGTCTCTTGTATGATGTCTCCTCTCGTTGTCCGCCTGCTGCTTCTTGTCTGCTTGGCTTCACCTCTTTATGGCGTGGAAAAGGTGAGAACTAGAGGATACCGAAAGGATCCTGACGCGGACAAGTGCACTGGAAATGATGCAGAAAAGCCCAACTGCACTAGACACTCTGGAGAAGGAAGATCTGCTTATTTGAACAACATGTATGGCAGTTGCATGCAGGGGCCAGCAGGCCCCACTGGCAGAGAGGGTAACCCTGGCACCAACGGCATCCCGGGGACGCCGGGTATCCCTGGCCGTGACGGACTCAAAGGGGAGAAAGGCGAGTGCATTAACGAGATCTTCGAGGAGCCCTGGAGGCCCAACTACAAGCAGTGTGCCTGGAACTCTCTCAATTATGGGATCGACCTGGGTAAAGTAGCTGACTGTACGTTCACCAAGCTGCGTTCAGACAGCTCCCTCAGAGTCCTCTTCAGCGGTTCCCTCAGACTCAAGTGTAAAAACGCATGCTGCCAGAGGTGGTACTTCACCTTCAATGGAGCAGAGTGCACAGGACCCCTGCCCATAGAGTCCATCATCTACTTAGACCAAGGAAGTCCTGAGCTCAACTCAACCATCAACATCCACAGAACATCCTCAGtTGAAGGGCTGTGTGAGGGTGTCAAAGCAGGCTTGGTGGATGTGGCCGTGTGGGTGGGGACCTGTGCCGACTATCCCAGAGGGGACGCATCTACAGGCTGGAATTCAGTATCCAGGATTATCATCGAGGAACTGCccaaataaatacaaagttACATGTAAGGGAGGGCCCAGTCCTGGTAGTATGACAGTATGTCATCTGGCCCTCCAAAACGATCAGGTGCGGTTTGCTGAGGCGTCACAGCATCACTGATGGTAACttgaatgtttggttttttattgtgtttaaatACTATCCTAGTTTACAGGTCTAGAAACAAGAATACTGTGTCATTCTGTCTACCAGAAATAAACTTTGTACTGTAGCTTTTCTGCTTATGGGTGCTGTTGGTATACGGTAACTATTTAACAGACATTGTGACAAGACCGATAATATTTAAACTATGTACTCATGTGACATGTTTATATCCATTATTACTGTTAATAaagtcatcttttttttttttttttttttaagaatttaacTTTATGACCACTTGTTATGTTTAGAAGCTTTGGAATACCCTGCACTCAATTCAATGTAGTCACAAAGTAATACATGTAATGTATTTATACACTATCAAACATGACAATGCAGATAAAGCAGTTTGGATTTTATAAGAAAATCTTATAAAGCTATGTagttacatactgtatttttggAAACAAA

Function

symbol description
cthrc1 Predicted to enable Wnt-protein binding activity and frizzled binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to act upstream of or within several processes, including establishment of planar polarity involved in neural tube closure; inner ear development; and ossification involved in bone remodeling. Located in extracellular space. Part of collagen-containing extracellular matrix. Implicated in Barrett's esophagus.

NR:

description
PREDICTED: collagen triple helix repeat-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806863.1 False 1497 mRNA 0.45 4 2201538 2207783
XM_039806864.1 False 1456 mRNA 0.45 4 2201538 2207784
XM_039806865.1 True 1581 mRNA 0.45 5 2201538 2207789

Neighbor

gene id symbol gene type direction distance location
dcaf13 dcaf13 coding downstream 8745 2174104 ~ 2192793 (-)
rims2a rims2,LOC106523613 coding downstream 30302 1982404 ~ 2171236 (-)
LOC120561841 NA coding downstream 222328 1977271 ~ 1979210 (-)
oxr1a oxr1 coding downstream 550899 1376272 ~ 1650639 (-)
si:dkey-29h14.10 NA coding downstream 886402 1308856 ~ 1315136 (-)
LOC120562568 fzd6 coding upstream 2067 2209856 ~ 2226422 (-)
mms22l mms22l coding upstream 86752 2294541 ~ 2319405 (-)
fbxl4 fbxl4 coding upstream 406083 2613872 ~ 2635658 (-)
faxcb faxc,LOC102781468 coding upstream 454107 2661896 ~ 2692862 (-)
coq3 LOC106584027 coding upstream 485210 2692999 ~ 2712717 (-)
G69995 NA non-coding downstream 72797 2128471 ~ 2128741 (-)
G69932 NA non-coding downstream 237231 1956191 ~ 1964307 (-)
G69927 NA non-coding downstream 254381 1946945 ~ 1947157 (-)
G69893 NA non-coding downstream 525187 1676118 ~ 1676351 (-)
G69866 NA non-coding downstream 846513 1354298 ~ 1355025 (-)
G70090 NA non-coding upstream 400453 2608242 ~ 2608898 (-)
G70081 NA non-coding upstream 402563 2610352 ~ 2611804 (-)
G70092 NA non-coding upstream 430273 2638062 ~ 2638288 (-)
G70094 NA non-coding upstream 436084 2643873 ~ 2644416 (-)
G70155 NA non-coding upstream 526160 2733949 ~ 2735724 (-)
zfpm2a zfpm2 other downstream 340372 1725158 ~ 1861166 (-)
osr2 osr2 other downstream 1468782 728485 ~ 732756 (-)
usp45 usp45 other upstream 519379 2727168 ~ 2818027 (-)
G70407 NA other upstream 1421344 3629133 ~ 3629818 (-)
LOC120563202 NA other upstream 1771522 3979311 ~ 3979414 (-)
eny2 eny2,LOC100692744 other upstream 1864535 4072324 ~ 4077811 (-)
cep76 cep76 other upstream 2154206 4361995 ~ 4445053 (-)

Expression


Co-expression Network