map1lc3b (map1lc3b)


Basic Information

Item Value
gene id map1lc3b
gene name map1lc3b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 33304714 ~ 33318901 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807976.1
GCTGACAGGTTTGTTTTGCTTGCTCGAGCTCGTCCACAACACAGCCAGAGGAAGGAAGCAACGACATCAATCCGTCTCTAAACTAGTGTTGCTTTTAGTTTGTATTTTAACAATAAGCTACCAGCACATGGGAACTCGAATAGTTTTATAAATCATTATTAGCTTTTATATTTTTGCTTTGATACTGCCAATACCTCCGTTTTCATCTACTGCCAACTGGTTGACTTTGACGCAATGCCTTCAGAAAAAACCTTCAAACAAAGAAGGACATTCGAACAGAGAGTAGAAGATGTCAGACTGATCCGAGAGCAGCACCCCAACAAGATACCAGTGATCATTGAGAGGTATAaaggagaaaaacaacttcCCATCCTGGACAAGACCAAGTTCCTGGTGCCAGACCACGTCAACATGAGTGAACTCATCAAGATTATCAGGAGGCGCCTCCAGCTGAACTCCAACCAGGCTTTCTTCCTGCTGGCTAATGGCCACAGCATGGTCTCTGTGTCGGCCGCCATCTCCGAGGTCTATGAGCGGGAGCGGGACCAGGATGGCTTCCTCTACATGGTCTACGCCTCCCAGGAGACCTTTGGCACAGCCGCGACCGCCCAGTGAACAGCCTTCCCTTCTTCTTCCACCTGGCAAGCGATTGGACAATTGTAGTTTTTAGTCCCCACCACGTTTCTTGCCGCACACCTTTTTAGTCTCGACTGTAAGAACTAAAACACAAACCGCTAAATCTAAACACAGTGTACGATAATATCCCGGCTCGGATTGGTTCAGGTTATGGTCTCTGTATTATGACTGCAGTGAGCGAATAGACTGTTTGGATACCACCACTCTCACCCAGTAGCATAACGCCACAAGGGTTTAACCAAAACAGCAGAGTTTAAGTAGAGAAATCCCCAAATCGGACTATGACTCAGGCCAATAGGTTTTAAGTGTATGTCTCTGCTTCTTTATTGTGCTTTCTGGTGAATCATGTCCACCGCCATGGCAACGTACCACCTGTTGACGGTAGTTAGTTACAGCGTTGTGTGTCTCCTCGGCTGTATTTATGTTAATGTATGTGTACATTTCAGGTAGGGATATTGCATAAAAGTGGCGAGGCTCCACCACttatttaaatatacattaGCCAATGAACAAAGCCAACCTTAATTTTAAGGGTTTTTGGAGACAGTCGGAGACAGAGAAAGTtaggatatgttttttttttttttaaggaagcATTTTATTGCAGTTAAAAAGGTGAAAGTTGGGGATTTGTAGTCTGGATTAGAGTACTTTTGCCAGAGAAAAATGCTAAATGAAGTAGAGAAGATCCTCGTGAATTTAATGCATCTCTGCTGTGTGTATCATCACATTCCCTCAATGGTCCTTCTTTGGTGTTTTTAACCTTTCCTGCATTGTATCCTTAAGCATCTTCACTGTAACGAAAAATATGTTGGGGAACTGCTTTTGCTATTGAAATGGATGATTgtagtttgcaaaaaaaaaaaaaaaaaaaaagccttgctGTACAGATATTATTGACTTTACAGATTTGAATATGAAACGGGGTTCCGTTGAGAGTGTAACCAAGTTGACTTTGGACACACTACAAGGAGCATGGTCTGATTGCATGTGTGAATGGAGGATGATGGTGTTTCTGTAAATGCCAATTAGAGGAGAGGGGTTGccgttttcttttccttttttatctCCTTTGTCACAAGTTTGTATTAAAGTGATCAAGGAATGAaggaaggtaaaaaaaaaaaaaacacaggcagGTTGATGAGCATTATTTCTGACTGTCCTGCCTTTGACCTTTTTAGGCTGATTTCCCAGAGCTGTCACTGTTGTTCAGTTTCAGTTCACTGAAATTCAACAAGCACTTTCGCTGTGGGGAACATACATCTGCCCAGAGGAGTTTTAAGGGCTGCActctgaaagaaaaagaaacatttgagTATCCTGTCTGTCTATAAATGGTCCTTCACTGGCTgtgcttctcctcctcctcaccgtCTTCTTAACAGATTGAGGCTTAGCTGCTTTTATATCGCAGTATTTTATctttttggttctttttattttatgtgattTTCATTTCTGTTGTACGACATGTCTTTACTCTACTCTGTCTACAGTATGTGAAGTACAAAggtgacttttcttttttttttctgactagTGAAAGccactgtgtgtttgttacaGAGGGGTGGAGCATTTGTTTCAGTGGTGTTTTCTGCCTGCTCCTCTGTTTCTCACACACCTATCCTCACACAGCAATATCACACAGCCTCttatgtatttatgttggtATTTTGTAAACaataaaaggagaaaaaaaaaacta

Function

symbol description
map1lc3b Predicted to enable microtubule binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Located in cytosol. Is expressed in several structures, including cardiovascular system; central nervous system; liver; neural tube; and pleuroperitoneal region. Orthologous to several human genes including MAP1LC3B (microtubule associated protein 1 light chain 3 beta).

NR:

description
microtubule-associated proteins 1A/1B light chain 3B

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0005829 cytosol cellular_component

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807976.1 True 2347 mRNA 0.41 4 33304714 33318901

Neighbor

gene id symbol gene type direction distance location
lcat lcat,LOC103142508 coding downstream 361146 32932422 ~ 32943568 (-)
pla2g15 LOC103379465 coding downstream 372418 32919453 ~ 32932296 (-)
csnk2a2b csnk2a2 coding downstream 399956 32891103 ~ 32904758 (-)
ano10b LOC100712256,LOC102306304,LOC101466670,LOC108246906 coding downstream 523612 32762681 ~ 32781102 (-)
LOC120564556 NA coding downstream 710888 32578557 ~ 32593826 (-)
det1 det1 coding upstream 11934 33330835 ~ 33346374 (-)
ranbp10 ranbp10 coding upstream 73433 33392334 ~ 33433329 (-)
necab2 necab2 coding upstream 480095 33798996 ~ 33981439 (-)
hydin NA coding upstream 663403 33982304 ~ 34119569 (-)
LOC120564294 LOC104959125 coding upstream 1031178 34350079 ~ 34362380 (-)
G89634 NA non-coding downstream 74596 33227378 ~ 33230118 (-)
G89615 NA non-coding downstream 187808 33115786 ~ 33116906 (-)
G89589 NA non-coding downstream 287531 33016948 ~ 33017183 (-)
G89588 NA non-coding downstream 301089 33003093 ~ 33003625 (-)
G89586 NA non-coding downstream 306248 32998236 ~ 32998466 (-)
G89658 NA non-coding upstream 65328 33384229 ~ 33384997 (-)
G89698 NA non-coding upstream 146501 33465402 ~ 33531805 (-)
G89709 edc4,LOC102782455 non-coding upstream 172947 33491848 ~ 33499415 (-)
G89712 NA non-coding upstream 188161 33507062 ~ 33509527 (-)
G89717 NA non-coding upstream 269074 33587975 ~ 33588641 (-)
znf319b znf319,LOC102797175 other downstream 391684 32906005 ~ 32913030 (-)
fa2h fa2h,LOC106937201,LOC102797665,LOC107674969,LOC107707436,LOC107589178,LOC104955910,LOC107714073 other downstream 453219 32786798 ~ 32851495 (-)
G89365 NA other downstream 1196648 32106623 ~ 32108066 (-)
G89241 NA other downstream 2036245 31243168 ~ 31268469 (-)
G89085 NA other downstream 2582211 30722108 ~ 30722503 (-)
G89849 mmyhl2,mmyhl1 other upstream 905360 34224261 ~ 34225516 (-)
G89870 LOC105899468,LOC106564289,LOC105009107,LOC106597831,LOC106591119,LOC103392864,LOC106597772 other upstream 971902 34290803 ~ 34331996 (-)
G89873 LOC100698998,LOC102198497,LOC102789814,LOC102294989,LOC101481490 other upstream 995630 34314531 ~ 34315143 (-)
LOC120563661 LOC102294989,LOC101481490 other upstream 1061160 34380061 ~ 34446136 (-)
psme3ip1 fam192a other upstream 1276308 34595209 ~ 34612162 (-)

Expression


Co-expression Network