lcat (lcat,LOC103142508)


Basic Information

Item Value
gene id lcat
gene name lcat,LOC103142508
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 32932422 ~ 32943568 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809063.1
ATGGCATCCGCAGGACACCTCTGCTCGGTGCTGCTGGTTGTATGTATACTGGGGCTTCATCACTCCTCAGGTTTCTGGATCGTTAACGTCGTCTTCCCGCCAAACGCCAAAGCCAGAATACCAAGCAACAGCACTCCACCACTCATTATCGTGCCAGGGAACTTGGGGAACCGTCTGGAAGCTAAGATAGACAAGCCGGTACTGGTCCACTGGATGTGCTATAAGAAAACTGAAAATTGGTTCACTCTGTGGATTGACCTCAACATGTTCATGCCTATAGGTGTAGACTGCTGGATTGACAACATTAGACTTGTTTACAATAGGACGACTCGGCGATCATCCAACTCCCCAGGGGTGCAGGTGCGGGTGCCAGGATTTGGGCAGACATATCCCATTGAGTTTCTTGACCAAAACAAACTGGctgGTTATTTTCACACTATGGTGCAACATTTGGTCAACATGGGCTACACCCGAAATGAGACGGTCCGAGGAGCACCGTACGATTGGAGATTAGCTCCTAatgagaatgcagagtaTTTCACAGAGCTGCAGGACCTGGTTGAGAAGATGTATGACGAGCACCAGCAGCCTGTTTACCTGCTGGGACACAGCATGGGCTGCCACTATGTCCTCTACTTTCTCAACCACCAACCTCAGTCCTGGAAGGACAAGTACGTCAGGGGCTTCATTTCCCTGGCAGCTCCATGGGGGGGTGCTGTTAAACCACTTAGAGTCATGGTGTCAGGTGAAAATGACGGCATCCCGATGATTTCCAACATCAAGATCCGCGAGGAGCAGAGGATGACAACAACTAATCCCTGGATGCTACCATCTGATTTATCCTGGCCGAAGGACCACGTGTTCATCTCCACACCAACCTTTAACTACACCAACCAGGACTACCAGCGCCTCTTCACAGACATCAATTTTGAAGATGGCTGGCACATGTGGGAGGACACCAAGAACCTTACTGGCGATCTCCACCCACCTGGTGTTGAGGTGTGGTGTATGTATGGCGTGGGGCTTCCAACTCCGGTGACATACATTTACGACGAGGAGTTTCCCAACGTGGACCCAGTGGACTTTGTTTACGCCGATGGGGACGACACAGTGGATAGCTTTAGCATGAGTCTTTGCAAACGTTGGGCAGGCCAGCAGGAGAAGCCAGTCCATGTTACAGAGTTCCGAGGGCTGGCCCACCTAAACATAGTGTTTCATGAAAAGGTGCTCAACCAAATCCAACATATCCTGGAGGGGAACTCGGATATGCCCAAAGAGGTTGACGTCCGATCTGTAGCTTAATAGaagacaacattatggaagagtttaaaaaactaaaacacatggaatgctggatttaaaaaaattttttttacatagttgaCTTTTGAGTCTtttcagctgtcaatcaaaaaacacatttcatataGGTCCAACATATGTTAGCACCCCCTCTTAGCCCACGGAATAGTTCTAAACAGATCTGGACTAGCAACCAATCTTACCTTGACCCCCAAGCCCATAACCATGACACCTTATCTAAATTAAATTGTGATGACTTGCAGTATGGGTTTGACCCTGATCTGATCCAATGCATTTagtttgttgtgtcttccttaTATTTGATGGTGCTCATGATGAGACTTGATACACATAAGACATGGTACACATAATTATCACATTAATTACAAACATAGTAATggggattgttttttttaccatggTTCAGTTATTGTAGTATGTGTAGTTTTCTCACAGTCCATTCAGGCAACTTCAAACCCTGTTACATctttacaaaaatacacaatCCTGCTTTGTTTACTTTTGATGGATGATGATTTAATCATTACAAagtgcaaatacacacaaactgCCATTGTGTCATATTCTATGGGTAGATAGTGTGACTGTAATGAATAGCTCATAGGGACCTCGCCAGTAACCTATTTTTTTCATTGTCTATAATGTCACTTTAATATTTCTATTaggatttatatattttttagataTAATTTGTTTCGAAAAATTATTATAAgatcacatttcttttttttcctcaggcTCATGTACAAGCATATTCAACTAGTGATGTGAATTTAAATACTGTTctgtaaacatgtattttaatgtttccaATTTTAAAAGCATTTAATTT

Function

symbol description
lcat Predicted to enable phosphatidylcholine-sterol O-acyltransferase activity. Predicted to be involved in lipid metabolic process. Predicted to be active in extracellular space. Is expressed in liver. Human ortholog(s) of this gene implicated in Norum disease and arteriosclerosis. Orthologous to human LCAT (lecithin-cholesterol acyltransferase).

NR:

description
phosphatidylcholine-sterol acyltransferase-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K00650 LCAT; lecithin-cholesterol acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809063.1 True 2155 mRNA 0.43 7 32932422 32943568

Neighbor

gene id symbol gene type direction distance location
pla2g15 LOC103379465 coding downstream 126 32919453 ~ 32932296 (-)
csnk2a2b csnk2a2 coding downstream 27664 32891103 ~ 32904758 (-)
ano10b LOC100712256,LOC102306304,LOC101466670,LOC108246906 coding downstream 151320 32762681 ~ 32781102 (-)
LOC120564556 NA coding downstream 338596 32578557 ~ 32593826 (-)
LOC120564368 LOC107714737 coding downstream 359699 32570069 ~ 32572723 (-)
map1lc3b map1lc3b coding upstream 361146 33304714 ~ 33318901 (-)
det1 det1 coding upstream 387267 33330835 ~ 33346374 (-)
ranbp10 ranbp10 coding upstream 448766 33392334 ~ 33433329 (-)
necab2 necab2 coding upstream 855428 33798996 ~ 33981439 (-)
hydin NA coding upstream 1038736 33982304 ~ 34119569 (-)
G89522 NA non-coding downstream 69856 32862300 ~ 32862566 (-)
G89395 NA non-coding downstream 621311 32310897 ~ 32311111 (-)
LOC120563490 NA non-coding downstream 660705 32271247 ~ 32271717 (-)
G89385 NA non-coding downstream 665407 32261973 ~ 32267015 (-)
G89369 NA non-coding downstream 748703 32180785 ~ 32183719 (-)
G89577 NA non-coding upstream 48521 32992089 ~ 32993049 (-)
G89586 NA non-coding upstream 54668 32998236 ~ 32998466 (-)
G89588 NA non-coding upstream 59525 33003093 ~ 33003625 (-)
G89589 NA non-coding upstream 73380 33016948 ~ 33017183 (-)
G89615 NA non-coding upstream 172218 33115786 ~ 33116906 (-)
znf319b znf319,LOC102797175 other downstream 19392 32906005 ~ 32913030 (-)
fa2h fa2h,LOC106937201,LOC102797665,LOC107674969,LOC107707436,LOC107589178,LOC104955910,LOC107714073 other downstream 80927 32786798 ~ 32851495 (-)
G89365 NA other downstream 824356 32106623 ~ 32108066 (-)
G89241 NA other downstream 1663953 31243168 ~ 31268469 (-)
G89085 NA other downstream 2209919 30722108 ~ 30722503 (-)
G89849 mmyhl2,mmyhl1 other upstream 1280693 34224261 ~ 34225516 (-)
G89870 LOC105899468,LOC106564289,LOC105009107,LOC106597831,LOC106591119,LOC103392864,LOC106597772 other upstream 1347235 34290803 ~ 34331996 (-)
G89873 LOC100698998,LOC102198497,LOC102789814,LOC102294989,LOC101481490 other upstream 1370963 34314531 ~ 34315143 (-)
LOC120563661 LOC102294989,LOC101481490 other upstream 1436493 34380061 ~ 34446136 (-)
psme3ip1 fam192a other upstream 1651641 34595209 ~ 34612162 (-)

Expression


Co-expression Network