G97485 (elavl4,LOC107657884)


Basic Information

Item Value
gene id G97485
gene name elavl4,LOC107657884
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22865827 ~ 22870448 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131548
AGCTCTTAACACCTCATTTTATTGTCCCAACATTCAAAAGTACAAATAATTCAAACACAACAGttttatgaaaaagaaaaaacaaacatttacagcaagatttttattttgtttccagTTTCAGAAATGACCTAAACTAGCAAGGATAACATGAAGTCATTCATCGCAGTAATTGGATtaataataagaataagaatactAAGAATAATagcaataataatcataataatcatcATTGATAATTGTTAAGTAATAACATAAGCAGGAGAGAGTAGAGAGAGCCGCGGTCGTGGGGCCCTGTGAACATTTTTTCgtcttttttgtctttaaagATTTCGTTTATAGATTTTTCAGATAGTAAACAAACACGTCTCAGGAGGAAAATGAAAACTGACAAGAAGAGCCGAGTTCCTCTGTTCACCTTCCCTCCTCCACTACTGGCTGCGTTGTTCCTACTGGCAGGCTGCCACTATAAGGCGCTACAGGGGATGGTGTGAGCCATAGGGGTTGGGCATAGAGCGAGGTGACGCAGCCCCATGTTACAAACACCCTGACAtgcacacactttcacacacacaaccacacttGCCATCTCTGTCACACATGCACTCAGGGAGACAAACTTTTGTATACATGTGCACTAAACagaaccaaatacacacactcactcactcactcacacacacaccatatgtatatactgtatatacgcACATTTGGATGTACTCCACGCTTACAAACATGGACAAACGcacaaaatgcacacacaattacataaaaggaacacacacaccacacacacacatgtgcacacaggGTCTAGGCGGAACACAGGCACGCATCGTAAGAGTTCAAAAGTCGTACAGTGTAGGAAATTAGTTCACACATCAGAACAACATTCTACTGGGGTCGTTGCATAATTCAAGCTCCCGACGGCAGCGGGGAGCATGAAGGGGTCTGgttggtgggtgggtgggttggtttgtttgtctgttgccGTTTATGACGTTAGAAAACTATGTGATTGGATGGCGCAGATGATGACTGGATAATAATGACGATATAAGATGACCCGGCCTGTCAGATGACTGAGGTGTGAGAGAGAAGGATGTACTTATGTGAGCATGCGTCTGAGTGTTTGAAATGCTCTCCACACACCTCCTTCATGTTTTCAAGTCTtaacaacaaacagaaaaatcCAATTCCGTATATTTATACTTCTGGAACCATTCCCTTACCTTTCACCtttcaaaatatataatatatatcatattagagtatataaaatatagaatCGGTACAATCCCTTTTCATACCTCCAGAGTACTTCTTAAGTATAGCAACAACTGCTTTAAATAACAGTTGGTGTGCAATGGTAACAATTTCtcatttttaaagatttgttggtatgtcatttgaaaacatgatgaatatttttaaaaataagtttgACTCTTCAGTGATTTTGACCGATTTAGTCCAGTGCAATGAATGACCCTCAAACAACAATGGGCATTTGCTCCTTTTAAAATGTATCTGCCCAAGCCTCCAAGAGCTGAATgttatataaaatgttttactgaaaACTGAAAACTATGCTTTCAGACCCACATTTTTGCATAAGGTTTCATCACAAAGCGGTAGTAAGTGGAGGGAGGGTGTGGACGGAGTGGCTTTTTATAACTACACAAACTTATCACAGGTTATATTGAACCAGAACGACTTATAACATTCTATTAAGACTAAACTTTATTGAAAAAGATCTAAAGATTTCATTTTAACAAGACAAGAAAAAAGCAATAGCAAATTTAACTATTAACTAGGTTATGCATAGCGAGTAACTGTTTCTAGTAATAAGGGAAGAGCGTCCCCCAACCCTCCagacatttttttcagttttcttgacttttagatttttttatattgtcatTTTGATATATTGGTACAAAGCACAAACGTACTAAAAGTTCTCTCAGTGCAGTGGACTACTGGAAGAGCCTCTCCACTAGTCGCTTTGTTCCCTTTTGCTCAGAAACGCCCCCTCCCTGTACCAGAATCACGCAAATACACAGacaatgaaacaaataaatacataataaatacaaataaatagaaaaataaatagtttaaaaaatagagAAGTGAATAAACTGGTAAACAAATACAGTTATAGTCTAAGCTTTTGTTCGGTTTCTTTTGCCGCGGTAGCAAACTGAAAGTTAatccaaatctttttttttttctccacaagcAACATGACAACAATTGAACAGTTTCCTCACAAGTTTTTCTAAATAACTGAACCACCACTTCATAATAAGTTGTCATATGAAAAAGACAAGCTCAAACAAAAGAACAGTGACAACTCATATAGTACAGTAGATATTGTAAAACAAATGTagactatatatgtatatatatatcatctATTTGTACACAGCAAATAAAGACACAGTTGTCATAGATCCTTTTTAAGGAAACAAATATCTAGACTAACGGAACTAGCTAATCATCATTTAGTTTTGACAAACGTTTCACGCTCAGCAAGTAACCTAAAAGTCAGcaagccaaacaaaaaaatacaaaataaaaatttgttcAGTGATTCTTACAAGGCCCAACTTCATGTATCTGGTTATTCAGCAAAGAAAGTCTCACCAGATTTTTGGGCCAacaataaacaaatattaaacaaagaacaGCAGCTCAATTCAATGCCAACAtcgaagttttttttcttttctttaaacaaCACATAGAACAACAAACTTGGATATTTAAGATATGTGAATAATGTAGTATAGCACCTACTGTTGATCGCTAAAAGGAAGttcttttcaaatgtaaattCACAAACGCAGACCGAAGAAAATGATATAGATAATGTATAGTATGCTGTCTAAATGGATAgatgtatatatatctatttaCTGATATCCCATATTGACTGAtgacaaaaacaggaaaacaaGTGGACAAAGGGTCTTCTTGCTTTGGGCTCTGGACTATAAGGATGGTTAGGCCTTGGAAAGACCCCTCTCCCTTCCCTTTTGGGTATCGCTGTTGAATAATTACGCACTAGTACATATGTGAAAAATTACCAAAATCACCTGCCTCGGTTTGCATCCCTTCCATCTACAAAATCACTGCCAACTTGGATtccccaaaaaacaaacaaccttTGATCCTATAAAGTACCACGGCAGAACGACAAGACAAGGTGGTGCCCCCTCCCTCCCGCCCCGGCCCCCCCTAGTTAGCCAGTCAaaatatttttctcttttttcaaatCCAGATTCTTGTAAAAATTCttcaataattattattttaattatcatttataaaaatagatcttctttctctttattttttatctttttctaAACGCATTTTTTTTCAAGCAAAGAGATCTTCTCTTTGGcaacagtgttattttttttttttcttaaattactGAACGTGTCATCAGGAAAGCTAACCCATCCCCTCCCTCGCCCCATCACCCTAAACCCCTGTGAGGAAAGACATTATGTTTTGTTTGcgatacaaaacaaaaacaatgttagaaattcttttcttttctacatTAGAGTTACTGAGATTGTGGAATCCCATCTATAATCGATAAGGGGAGGTTTTTGATACACacttaaaaatgaatgaatggttcaccaatttaaaaaagagcCCCCTCCCTTTCACCAACAGGGAGGTATATAATACTAACGACAGTGGATCCGgatttacaaaagaaaaacaaatcctGAATCAAGACAGAGAAAAGGTTTCAATTTAAAAAGGACGTTCTCTTCTCTGAAATAAGGGGATACAGGGATTTGCTACTGTTTACACAGAagagaaaaataattttaacaACCACAACAAACAGAAAGAATATACAATAAAGAGAAGCCTGCATTATCACAGGAGCTTCCAAAAACTCATgaacattttcatcatttcatttttgtaaTACTTAGGCAACATTGGCTTATAGGTCCAAAGTTATAATATAAGCCATTTCTAGTTCAATTTGTTTGATGGTTTGTCGGTTGCTTTGTGTTCCGGTTGGAGTTTGAGTTTGCTGTGTTGGATGGCTGTAGTAGGGTGGTAGTGACTGAAGGGGCTAAGGGACGGGTGGAGGTGGGGGGGAAAGGTTGGGGGCAATTTGGGAGCAGACAAAGTCGCGGGGCAACTGCTTCTACTTGTCAAAGTTCAGGACTTGTGTGTCTTGTTAGTCTTGAAGGAGACTTGCAAGACACGGTCGCCCAACCTGTAGCCGTTGAGACTGGCGATGGCCATGGCCGCCTCGTCGTAATTCGTCATGGTGACGAAGCCGAAGCCTTTGCACTTGTTGGTGTTGAAGTCACGGATCACCTTGACATTGTTGACTGCACCGAAGGGCCCAAACAGCTGCCACAGCACACTCTCATCTGAATCTGGGGACAGGTTGTACACGAAGATGCACCAACCAGTGCCCGTGTGCCCGGGGATGTTCATGCCAACCAGGCTGGTCATGCTGTCAATGGTGATGGGGGAGAACCTGGGAGGCAAGGGAGAGcagaaagagggggagagagaaaagagcaa

Function

symbol description
elavl4 Predicted to enable RNA binding activity. Acts upstream of or within axonogenesis. Part of protein-containing complex. Is expressed in nervous system and trigeminal placode. Orthologous to human ELAVL4 (ELAV like RNA binding protein 4).

NR:

description
PREDICTED: ELAV-like protein 4 isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131548 True 4590 lncRNA 0.38 2 22865827 22870448

Neighbor

gene id symbol gene type direction distance location
dmrta2 dmrta2 coding upstream 87636 22775008 ~ 22778191 (+)
faf1 faf1,LOC102783815 coding upstream 101739 22698080 ~ 22764088 (+)
ttc39a ttc39a coding upstream 208801 22625085 ~ 22657026 (+)
eps15 LOC103370402 coding upstream 242292 22591643 ~ 22623535 (+)
calr LOC102308154,LOC102192544,LOC101484884,LOC100701980,LOC107393148,LOC108230540 coding upstream 276508 22584206 ~ 22589319 (+)
bend5 bend5,LOC102785035 coding downstream 306059 23176507 ~ 23191077 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding downstream 461330 23331778 ~ 23335697 (+)
si:ch1073-396h14.1 LOC103365213 coding downstream 549496 23419944 ~ 23454783 (+)
fam32a fam32a,LOC103365210 coding downstream 715353 23585801 ~ 23588140 (+)
hdgfl2 LOC103368921 coding downstream 721004 23591452 ~ 23599922 (+)
LOC120565733 NA non-coding upstream 65682 22780607 ~ 22800145 (+)
G97410 NA non-coding upstream 270550 22594496 ~ 22595277 (+)
G97338 NA non-coding upstream 542972 22322492 ~ 22322855 (+)
G97335 NA non-coding upstream 549469 22313648 ~ 22316358 (+)
G97297 NA non-coding upstream 691434 22158057 ~ 22174393 (+)
G97489 NA non-coding downstream 44068 22914516 ~ 22918731 (+)
G97537 NA non-coding downstream 453524 23323972 ~ 23324176 (+)
G97538 NA non-coding downstream 453811 23324259 ~ 23324499 (+)
G97554 NA non-coding downstream 482392 23352840 ~ 23363480 (+)
G97559 NA non-coding downstream 489610 23360058 ~ 23362720 (+)
rnf11b rnf11 other upstream 189649 22657480 ~ 22676178 (+)
LOC120566217 NA other upstream 289625 22576129 ~ 22576202 (+)
LOC120566220 NA other upstream 290679 22575067 ~ 22575148 (+)
LOC120566221 NA other upstream 290903 22574843 ~ 22574924 (+)
LOC120566225 NA other upstream 291155 22574591 ~ 22574672 (+)
spata6 spata6 other downstream 378681 23249129 ~ 23282671 (+)
LOC120565086 NA other downstream 430358 23300806 ~ 23303691 (+)
pole4 NA other downstream 451016 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 508283 23378731 ~ 23380375 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 604334 23474782 ~ 23477818 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G158493 NA unknown CI01000030 null 2279113 ~ 2279192 (+)
rainbow trout (Oncorhynchus mykiss) G2213395 elavl4 non-coding NC_050570.1 CM025857.1 22689204 ~ 22745824 (-)