LOC120565424


Basic Information

Item Value
gene id LOC120565424
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2453319 ~ 2456640 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811226.1
AGTACATCACAGCAGCACCTCGAAACCCCACACCTTTCCACTACATTCCATGACATAGGATGCCAGACCGAACCACCACAAAATATGTCAGTGGGCATACAGTCCAGTGCTCCAAAATGAGAACAGTCGGCACACAGCTATCCATGGGTACGCTGAGGGCTTCCATGAGAAGCAAAGTGTTTACACTGAGACCACTTCAAGCTCCCCAGAATTCACCCCGATGTCTTCAACACCAATAAGACCCCAAGATTACAGACCTCGCAAGAGACCTCGTCTTGagttggaggaggaggaggaggaggaggaagagggagacacCTCAACAGAGTTGCAAGCTGAGCCACAAGACTCAACATATATCCCTGGTGACTCTGTTCTAACGGACGAATCTGCCATGTCgtCTGAGCCAGTGTCTACTTATAAGGATGATAAGTACATTGTTTTTGAAAGTTGCCTAAGGGAGCTTTTTCAAAGCTGTCCTGTATGCAAGAGGCAGTGTGACGTTCAGCGCCGAAAAATGGGAACGTATGTGTCATTCACACAGCTCTGCCCACACTGCAACTATTCAAGACAGTGGCAGAGTCAGCCTGTTGTAGGAAGTAACCCCGTCGGCAACCTACACCTGTCAGCGGAAAAGATATGCAAGGCCATGAATCTTCAGATTTTCCAGTATGGCACCTTCAGGAGGCATGCTAGGAGTTTTCTGGAGCCAGCCATAATCCACAAATGGAAGACGGATCAGCAACATCTTTTTCAAAAGTTACAGCATGGAGGAAAGATTGGAGTCAGTGGAGATATGCAAACTGACTCCCCAGGGCACTCAGCAAAGTATGGGAGCTACACACTGATGCACCTAGACAGAAACCGCATTATCGACCTTCAGCTTGTTCAGAGCAATGAAGTAGGTGGTAGTTACCACATGGAGAAGGAGGGCCTTAAACGCTGCCTGGATCTACTGGATTCAAACGGTTTGGTGATGGACTACATTGTCACCGACCGTCATCCACAGATCCAGAAGTATCTGAGGGAGCGCAGCATCACCCACTTCTATGATGTGTGGCACTTTGAGAAAGGTTTGTCAAAGAAACTTGACAAAGTTGCGCAAAACAAGGACTGCGGGGTGTTGAAGAAGTGGCTGCGTAGCATCAAAAGCCATGTCTACTGGAGTGCAACATTGTCAACATCAGGGCCAGAGAAGGTAGCCAAGTGGATGTCGATTGTCAACCACATCCAGAACGTGCACTTGCATGAAAACCCGGAGTGCCAACATCCTGATCGAGTGTCAAGGGATCCAAGTAAATGGTTTCAACCAGgGTCAATGGCGCTCTACAAAGTGGAAAAAATCCTGGTCAATAAGAGGGTTGTCAAAGATGTGGAGAAGCTGAGCCACCACTACCAAACATCATCCCTGGAGGCTTTCCACAGTTTGATACTTCGCTTCACACCCAAGAATGTGGTTTTCCCTTTCATGGGCATGCTTTGCAGGTTGTACCTTGCAGCCATGCACTACAATGAAAATGCAGACTGCGAGCAAGCCACAacatctgcaggacaaccagtATTCAAGGTTGTGTTTCCCAAGTCCAGGAAGGGGGAGGTGACTGCGAGGCCAGTAAAAACAGACCCTACATACAAATATGTGGAAGAACTTATGAGGCTGGTTTTCGAGGAGGTGTTTGAGGACCCAACTCCATTTGTTGAGGTGCTGAAACTGATCCCCATCCCCAAGGATCTGGCATCGGAACATGAGAGACCCTCAAAGGAGGAAGTGGTTGCCCGCCATCTGTCCCGCTTTGCTCAAGGGACAGTCGGAACCGTACATACTAGGCACCCGGATCAAGAAACTGCAGGCGTATCCGGCGTACAACGCACGACGGGATTACCACCCTAACAGTCCTTCCCAAGTAGCCCCAGCACCAGTTGACCAAGCCAAGATAGGCAAGGTGCCTGTAGCGCCTGTATGGACAGGATTGGACAATAGTGAACATCACTCTTATTTATAGTGTAtatctgtatttttttcctATTATGTATATTAAGATTGTTCTATTTATATAAGCGT
>XM_039811227.1
GTGTTTACACTGAGACCACTTCAAGCTCCCCAGAATTCACCCCGATGTCTTCAACACCAATAAGACCCCAAGATTACAGACCTCGCAAGAGACCTCGTCTTGagttggaggaggaggaggaggaggaggaagagggagacacCTCAACAGAGTTGCAAGCTGAGCCACAAGACTCAACATATATCCCTGGTGACTCTGTTCTAACGGACGAATCTGCCATGTCgtCTGAGCCAGTGTCTACTTATAAGGATGATAAGTACATTGTTTTTGAAAGTTGCCTAAGGGAGCTTTTTCAAAGCTGTCCTGTATGCAAGAGGCAGTGTGACGTTCAGCGCCGAAAAATGGGAACGTATGTGTCATTCACACAGCTCTGCCCACACTGCAACTATTCAAGACAGTGGCAGAGTCAGCCTGTTGTAGGAAGTAACCCCGTCGGCAACCTACACCTGTCAGCGGAAAAGATATGCAAGGCCATGAATCTTCAGATTTTCCAGTATGGCACCTTCAGGAGGCATGCTAGGAGTTTTCTGGAGCCAGCCATAATCCACAAATGGAAGACGGATCAGCAACATCTTTTTCAAAAGTTACAGCATGGAGGAAAGATTGGAGTCAGTGGAGATATGCAAACTGACTCCCCAGGGCACTCAGCAAAGTATGGGAGCTACACACTGATGCACCTAGACAGAAACCGCATTATCGACCTTCAGCTTGTTCAGAGCAATGAAGTAGGTGGTAGTTACCACATGGAGAAGGAGGGCCTTAAACGCTGCCTGGATCTACTGGATTCAAACGGTTTGGTGATGGACTACATTGTCACCGACCGTCATCCACAGATCCAGAAGTATCTGAGGGAGCGCAGCATCACCCACTTCTATGATGTGTGGCACTTTGAGAAAGGTTTGTCAAAGAAACTTGACAAAGTTGCGCAAAACAAGGACTGCGGGGTGTTGAAGAAGTGGCTGCGTAGCATCAAAAGCCATGTCTACTGGAGTGCAACATTGTCAACATCAGGGCCAGAGAAGGTAGCCAAGTGGATGTCGATTGTCAACCACATCCAGAACGTGCACTTGCATGAAAACCCGGAGTGCCAACATCCTGATCGAGTGTCAAGGGATCCAAGTAAATGGTTTCAACCAGgGTCAATGGCGCTCTACAAAGTGGAAAAAATCCTGGTCAATAAGAGGGTTGTCAAAGATGTGGAGAAGCTGAGCCACCACTACCAAACATCATCCCTGGAGGCTTTCCACAGTTTGATACTTCGCTTCACACCCAAGAATGTGGTTTTCCCTTTCATGGGCATGCTTTGCAGGTTGTACCTTGCAGCCATGCACTACAATGAAAATGCAGACTGCGAGCAAGCCACAacatctgcaggacaaccagtATTCAAGGTTGTGTTTCCCAAGTCCAGGAAGGGGGAGGTGACTGCGAGGCCAGTAAAAACAGACCCTACATACAAACTTATGAGGCTGGTTTTCGAGGAGGTGTTTGAGGACCCAACTCCATTTGTTGAGGTGCTGAAACTGATCCCCATCCCCAAGGATCTGGCATCGGAACATGAGAGACCCTCAAAGGAGGAAGTGGTTGCCCGCCATCTGTCCCGCTTTGCTCAAGGGACAGTCGGAACCGTACATACTAGGCACCCGGATCAAGAAACTGCAGGCGTATCCGGCGTACAACGCACGACGGGATTACCACCCTAACAGTCCTTCCCAAGTAGCCCCAGCACCAGTTGACCAAGCCAAGATAGGCAAGGTGCCTGTAGCGCCTGTATGGACAGGATTGGACAATAGTGAACATCACTCTTATTTATAGTGTAtatctgtatttttttcctATTATGTATATTAAGATTGTTCTATTTATATAAGCGT
>XM_039811228.1
GTGTTTACACTGAGACCACTTCAAGCTCCCCAGAATTCACCCCGATGTCTTCAACACCAATAAGACCCCAAGATTACAGACCTCGCAAGAGACCTCGTCTTGagttggaggaggaggaggaggaggaggaagagggagacacCTCAACAGAGTTGCAAGCTGAGCCACAAGACTCAACATATATCCCTGGTGACTCTGTTCTAACGGACGAATCTGCCATGTCgtCTGAGCCAGTGTCTACTTATAAGGATGATAAGTACATTGTTTTTGAAAGTTGCCTAAGGGAGCTTTTTCAAAGCTGTCCTGTATGCAAGAGGCAGTGTGACGTTCAGCGCCGAAAAATGGGAACGTATGTGTCATTCACACAGCTCTGCCCACACTGCAACTATTCAAGACAGTGGCAGAGTCAGCCTGTTGTAGGAAGTAACCCCGTCGGCAACCTACACCTGTCAGCGGAAAAGATATGCAAGGCCATGAATCTTCAGATTTTCCAGTATGGCACCTTCAGGAGGCATGCTAGGAGTTTTCTGGAGCCAGCCATAATCCACAAATGGAAGACGGATCAGCAACATCTTTTTCAAAAGTTACAGCATGGAGGAAAGATTGGAGTCAGTGGAGATATGCAAACTGACTCCCCAGGGCACTCAGCAAAGTATGGGAGCTACACACTGATGCACCTAGACAGAAACCGCATTATCGACCTTCAGCTTGTTCAGAGCAATGAAGTAGGTGGTAGTTACCACATGGAGAAGGAGGGCCTTAAACGCTGCCTGGATCTACTGGATTCAAACGGTTTGGTGATGGACTACATTGTCACCGACCGTCATCCACAGATCCAGAAGTATCTGAGGGAGCGCAGCATCACCCACTTCTATGATGTGTGGCACTTTGAGAAAGGTTTGTCAAAGAAACTTGACAAAGTTGCGCAAAACAAGGACTGCGGGGTGTTGAAGAAGTGGCTGCGTAGCATCAAAAGCCATGTCTACTGGAGTGCAACATTGTCAACATCAGGGCCAGAGAAGGTAGCCAAGTGGATGTCGATTGTCAACCACATCCAGAACGTGCACTTGCATGAAAACCCGGAGTGCCAACATCCTGATCGAGTGTCAAGGGATCCAAGTAAATGGTTTCAACCAGgGTCAATGGCGCTCTACAAAGTGGAAAAAATCCTGGTCAATAAGAGGGTTGTCAAAGATGTGGAGAAGCTGAGCCACCACTACCAAACATCATCCCTGGAGGCTTTCCACAGTTTGATACTTCGCTTCACACCCAAGAATGTGGTTTTCCCTTTCATGGGCATGCTTTGCAGGTTGTACCTTGCAGCCATGCACTACAATGAAAATGCAGACTGCGAGCAAGCCACAacatctgcaggacaaccagtATTCAAGGTTGTGTTTCCCAAGTCCAGGAAGGGGGAGGTGACTGCGAGGCCAGTAAAAACAGACCCTACATACAGTGTTTGAGGACCCAACTCCATTTGTTGAGGTGCTGAAACTGATCCCCATCCCCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811226.1 True 2062 mRNA 0.48 10 2453319 2456640
XM_039811227.1 False 1874 mRNA 0.48 9 2453319 2456299
XM_039811228.1 False 1516 mRNA 0.48 9 2453651 2456299

Neighbor

gene id symbol gene type direction distance location
LOC120565577 NA coding downstream 290225 2134561 ~ 2163094 (-)
LOC120565573 NA coding downstream 480706 1968185 ~ 1972613 (-)
si:ch211-1a19.3 NA coding downstream 847353 1583388 ~ 1605966 (-)
LOC120565409 cunh19orf24 coding downstream 991370 1456573 ~ 1461949 (-)
si:ch211-152f22.4 NA coding downstream 1057791 1390241 ~ 1395528 (-)
LOC120565579 NA coding upstream 36172 2492812 ~ 2526088 (-)
apc2 apc2 coding upstream 78687 2535327 ~ 2600128 (-)
LOC120565580 NA coding upstream 146773 2603413 ~ 2617402 (-)
LOC120565581 NA coding upstream 164071 2620711 ~ 2625418 (-)
LOC120565431 NA coding upstream 178371 2635011 ~ 2638877 (-)
G92616 NA non-coding downstream 30208 2416420 ~ 2423111 (-)
G92558 NA non-coding downstream 47755 2331273 ~ 2405564 (-)
LOC120565446 NA non-coding downstream 64008 2389090 ~ 2389311 (-)
G92552 NA non-coding downstream 95532 2240016 ~ 2357787 (-)
G92537 NA non-coding downstream 117056 2324313 ~ 2336263 (-)
G92637 NA non-coding upstream 41429 2498069 ~ 2501007 (-)
G92646 NA non-coding upstream 96815 2553455 ~ 2567742 (-)
G92651 NA non-coding upstream 128864 2585504 ~ 2586077 (-)
G92699 NA non-coding upstream 276473 2733113 ~ 2733464 (-)
G92715 NA non-coding upstream 305920 2762560 ~ 2762840 (-)
G92565 NA other downstream 83653 2366152 ~ 2369666 (-)
G92564 NA other downstream 91657 2360991 ~ 2361662 (-)
G92535 NA other downstream 146010 2288275 ~ 2307309 (-)
slc30a7 slc30a7 other downstream 366195 2063666 ~ 2087124 (-)
s1pr1 s1pr1 other downstream 422262 1948413 ~ 2031057 (-)
G92930 NA other upstream 439289 2895929 ~ 2898679 (-)
LOC120565433 NA other upstream 509352 2965992 ~ 2989180 (-)
G92940 NA other upstream 587056 3043696 ~ 3219282 (-)
G92990 NA other upstream 890890 3347530 ~ 3464190 (-)
LOC120565458 thop1,LOC100703187,LOC102780215 other upstream 1020714 3477354 ~ 3547811 (-)

Expression


Co-expression Network