ssbp3b (ssbp3,LOC100703237)


Basic Information

Item Value
gene id ssbp3b
gene name ssbp3,LOC100703237
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25069211 ~ 25083922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812027.1
GACCAGGCTCGGTTGAGTCGTCGGGTTGAGGAGGAGTGCGGTTGGAGTGCTAGAGGGTCGCGGCCGCGATGATCTGACAGATGAAATAGcggaaaaaaaggaagagaaggCGGTCGTCCACCCACACAAAACATGTTCCCCAAAGGCAAAAGCACCCCGGTGCCGTCGGACGGCCAAGCACGAGAAAAGTTGGCTCTGTACGTCTATGAGTATTTGTTGCATATAGGAGCACAGAAGTCCGCACAGACCTTTTTATCAGAGATacgatgggagaaaaacataacACTCGGAGAACCCCCTGGATTCCTACATTCCTGGTGGTGTGTATTCTGGGACTTGTATTGTGCTGcaccagagaggagagagacatgtGACCACTCCAGTGAAGCAAAAGCCTTCCATGATTACagtGCAGCAGCAGCCCCCAGTCCTGTGATGGGAGGGATGCCCCCTGGTGAGGGCATGCCAGGAGGACCCATGCCACCCGGCTTTTTTCAGGGTCCTCCTGGTCCCCAGGGCTCTCCTCACCCTCAGCCTCCTCCCCCTAACAGTATGATGGGACCTCACAGTCAGtCCTTCATGTCGCCTCGCTTCGCTGGAGGCCCAAGAGGTCCCCCCATCAGGATGGCCAACCAGCCCCCAGGCGGAGGACCGGGTCCTCATCCCATGCTGCCCAACATGGACCCAACACGGCCACAAGGCCATCCTAACTTGGGGCCAATGCAGAGAATGAGCGGCCCTCGAGGCATGGGACCTATGGGGCCCGGCCCTCAGAACTTCGGTGGCGGGATGAGGCCTCCACACAACGCCATGGGTCCTGGTATGCCAGGAGTAAACATGGGTCCAGGGACTGGTCGGCCCTGGCCCAATCCCAACAATGCCAACTCTATGCCTTACTCATCACCCTCTCCTGGTGCATACGGGGGTGCTTCTGGAGGTGGGGGCCCCCCAGGAACTCCCATCATGCCCAGCCCTGCAGACTCAAACAACTCTGGTGACAATTTGTACACCATGATAAACACTGGATCCGGCAACCGAAACAATTTCCCTATGGGCCCCGGCTCTGACGGGCCCCTGGGAGCCATGGCTGGGATGGAACCACACCACATGAACGGGTCACTAGGCTCTGGTGATTTGGATGGAATGAACAAGAATTCCCCAAACAATTTAAGTGGCATTAGCAATCCTCCTGGGACCCCAAGGGATGACGGGGAGCTGAGCGGAAACTTCCTCCACTCCTTTCAGAGCGAGAGCTACTCTCCAACCATGACGATGAGTGTGTGACCTCCCCTCCACCCCACCCGACATTATTTGCCATCATTCCGAGGATCTGAACTCCCTTTAGGACACGGCCAAACACATCAGCACCGAATCAGGGACAGGCGCCATTTTGGTTCCACACTAACGCCAGAATGCTGATCGGAGAAAAATCAAAATGGCTGGCGACTACTGCTCCTTGCTCAAAATGAAGGACAATTTCTCCATTTATCACAAACCCCAATTGTGACGAAAACCAGCTACTGAAATGCATACATGACACGTTTTATGTTCTTTGCAGAGTCCCGACATCCCTCTCAGTCCCCTCAACCCTAGAGCGAAgagaggggaggaaaaaaaagaaaaaa
>XM_039812028.1
GACCAGGCTCGGTTGAGTCGTCGGGTTGAGGAGGAGTGCGGTTGGAGTGCTAGAGGGTCGCGGCCGCGATGATCTGACAGATGAAATAGcggaaaaaaaggaagagaaggCGGTCGTCCACCCACACAAAACATGTTCCCCAAAGGCAAAAGCACCCCGGTGCCGTCGGACGGCCAAGCACGAGAAAAGTTGGCTCTGTACGTCTATGAGTATTTGTTGCATATAGGAGCACAGAAGTCCGCACAGACCTTTTTATCAGAGATacgatgggagaaaaacataacACTCGGAGAACCCCCTGGATTCCTACATTCCTGGTGGTGTGTATTCTGGGACTTGTATTGTGCTGcaccagagaggagagagacatgtGACCACTCCAGTGAAGCAAAAGCCTTCCATGATTACagtGCAGCAGCAGCCCCCAGTCCTGTGATGGGAGGGATGCCCCCTGGTGAGGGCATGCCAGGAGGACCCATGCCACCCGGCTTTTTTCAGtCCTTCATGTCGCCTCGCTTCGCTGGAGGCCCAAGAGGTCCCCCCATCAGGATGGCCAACCAGCCCCCAGGCGGAGGACCGGGTCCTCATCCCATGCTGCCCAACATGGACCCAACACGGCCACAAGGCCATCCTAACTTGGGGCCAATGCAGAGAATGAGCGGCCCTCGAGGCATGGGACCTATGGGGCCCGGCCCTCAGAACTTCGGTGGCGGGATGAGGCCTCCACACAACGCCATGGGTCCTGGTATGCCAGGAGTAAACATGGGTCCAGGGACTGGTCGGCCCTGGCCCAATCCCAACAATGCCAACTCTATGCCTTACTCATCACCCTCTCCTGGTGCATACGGGGGTGCTTCTGGAGGTGGGGGCCCCCCAGGAACTCCCATCATGCCCAGCCCTGCAGACTCAAACAACTCTGGTGACAATTTGTACACCATGATAAACACTGGATCCGGCAACCGAAACAATTTCCCTATGGGCCCCGGCTCTGACGGGCCCCTGGGAGCCATGGCTGGGATGGAACCACACCACATGAACGGGTCACTAGGCTCTGGTGATTTGGATGGAATGAACAAGAATTCCCCAAACAATTTAAGTGGCATTAGCAATCCTCCTGGGACCCCAAGGGATGACGGGGAGCTGAGCGGAAACTTCCTCCACTCCTTTCAGAGCGAGAGCTACTCTCCAACCATGACGATGAGTGTGTGACCTCCCCTCCACCCCACCCGACATTATTTGCCATCATTCCGAGGATCTGAACTCCCTTTAGGACACGGCCAAACACATCAGCACCGAATCAGGGACAGGCGCCATTTTGGTTCCACACTAACGCCAGAATGCTGATCGGAGAAAAATCAAAATGGCTGGCGACTACTGCTCCTTGCTCAAAATGAAGGACAATTTCTCCATTTATCACAAACCCCAATTGTGACGAAAACCAGCTACTGAAATGCATACATGACACGTTTTATGTTCTTTGCAGAGTCCCGACATCCCTCTCAGTCCCCTCAACCCTAGAGCGAAgagaggggaggaaaaaaaagaaaaaa

Function

symbol description
ssbp3 Predicted to enable single-stranded DNA binding activity and transcription coactivator activity. Predicted to be involved in head development and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within hematopoietic progenitor cell differentiation and mesendoderm development. Predicted to be part of protein-containing complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: single-stranded DNA-binding protein 3 isoform X4

GO:

id name namespace
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812027.1 True 1625 mRNA 0.55 18 25069211 25083922
XM_039812028.1 False 1550 mRNA 0.55 17 25069211 25083922

Neighbor

gene id symbol gene type direction distance location
erich3 erich3,LOC107081397 coding upstream 39995 25009864 ~ 25029216 (+)
slc44a5b slc44a5 coding upstream 80878 24947600 ~ 24988333 (+)
LOC120564918 NA coding upstream 293551 24765447 ~ 24775660 (+)
LOC120565988 LOC103367413,LOC108230778 coding upstream 336052 24728796 ~ 24733159 (+)
si:ch211-221n20.8 LOC103365710 coding upstream 347113 24710527 ~ 24722098 (+)
LOC120565286 LOC103358799 coding downstream 12916 25096838 ~ 25178753 (+)
mpnd mpnd coding downstream 135560 25219482 ~ 25228281 (+)
plin3 plin4 coding downstream 360477 25444399 ~ 25457159 (+)
zgc:77486 LOC104918432,LOC103358789,LOC101467589,LOC102787348,LOC100705167 coding downstream 373331 25457253 ~ 25467003 (+)
abhd17ab abhd17a,LOC102787648,LOC100697085,LOC102288803,LOC101468085 coding downstream 384477 25468399 ~ 25476235 (+)
G98033 LOC104965512 non-coding upstream 178835 24885420 ~ 24890376 (+)
G98021 NA non-coding upstream 193545 24837613 ~ 24875666 (+)
G98019 mknk1 non-coding upstream 233694 24833437 ~ 24835517 (+)
G98015 NA non-coding upstream 281671 24787331 ~ 24787540 (+)
G98014 LOC106904844,LOC106963772,LOC102314236,LOC103463589,LOC106513892,LOC102207185,LOC100706092 non-coding upstream 283869 24784796 ~ 24785342 (+)
G98128 NA non-coding downstream 107142 25191064 ~ 25191838 (+)
G98123 NA non-coding downstream 145460 25229382 ~ 25232400 (+)
G98163 NA non-coding downstream 169551 25253473 ~ 25258486 (+)
G98176 NA non-coding downstream 339724 25423646 ~ 25479232 (+)
G98177 NA non-coding downstream 395426 25479348 ~ 25479604 (+)
elovl1b LOC106963699,LOC101078639 other upstream 195295 24852287 ~ 24873916 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other upstream 285330 24781918 ~ 24783881 (+)
LOC120565649 LOC103373964,LOC107081966 other upstream 303986 24749017 ~ 24765225 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other upstream 861070 24204341 ~ 24208141 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other upstream 1418698 23631119 ~ 23650513 (+)
G98194 NA other downstream 448903 25532825 ~ 25547089 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other downstream 646303 25730225 ~ 25738789 (+)
dot1l dot1l,LOC102793654 other downstream 907584 25991506 ~ 26019371 (+)
oaz1a oaz1,LOC104950707 other downstream 950829 26034751 ~ 26039866 (+)
zbtb7a zbtb7a other downstream 1199130 26283052 ~ 26295382 (+)

Expression


Co-expression Network