arpc5b (arpc5,LOC104921830,LOC103367487,LOC103137250)


Basic Information

Item Value
gene id arpc5b
gene name arpc5,LOC104921830,LOC103367487,LOC103137250
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13948948 ~ 13954916 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812031.1
AGCAAAAACCACTCAGAGGAAAAGGGAGGAAGTCAGGAAGCTGCCTGTTTGTGACAGCCGTATTAAAGAAAAgcactgttaaaaaaaggcCGGACTTGAGCTTGAACTCTCGTCCTTCTCAGTTAGAACTCGACTCCCAAACCCGCCGCCGACATGTCAAAGAACACTGTGTATGCCCGCTTCAGGCGACTGGACGTGGATGAGTACGACGAGAACAAATTTGTGGACGAGGAGGACGGAGGAGAAAACCAGCTGGGTCCCGACGAGGCAGAGGTGGACTCCCTCATCAGACAAGGGAATGTCATGGAGGCTTTACAAGCAGTCCTGAAGAACCCGCCAATCAACACAAAGAACCAGAACGTCAAGgATCGTGCTGAGGCTTTGGTGCTGAAGGTGCTCAGCGCCTTTAAGAGCAGTGACATTGAGAAGGGGGTGCAGTCCCTCGACAAGAACAGCGTTGACCTGCTGATGAAATATATCTACAAGGGCTTTGAGAAGCCGTCAGAAAACAGCAGCGCGGTCTTACTGCAGTGGCATGAAAAGGCCCTGGCAGCTGGAGGAGTGGGCAGCATCGTCAGGGTACTAACAGCAAGGAAGACTGTCTAAAAGAGGAGTGGAGTATCAGTTTACTCCacatcactgacacacacatactgttcTTGTAATCATAACAGATGGCATAGGGACTAAAGGAAAAAACTGATTTTCACCCCAATGTGATCCTGCTGTGTTCAAGGctagacttaaaaaaaacaaaacaaaaaatcgaATATGGGTCAcattaggttaaaaaaaaaaaaagaaggtttttcttctttcttcccaTTAATGATCACAGCCGACTAAATCATATTTCTCACAGGGTGCTACAGAGAACCTCATATCCCATGTGTCTGTGCTGCTTCCCTGATCTACTCACAATATCCCGCTTTCTCTCCATGTCATTTCTATGCacaccagtggttcccaacctagaGGAGATAAATCGTAGAACAAATGCAAGAAAAACACATTCCCACTACAGGAAACCTATGTGAGACCTTCCATtaatctttgcttttttgtgAATTACTGGATAATTTTACCTCTTATTGGTCACAAGCCATAGAGGTTGGGAGCTACTGCTGTACACAGTACTGTACCTACACACCCATATATGAACAACACATTTGTGCTCAATCACAGGTGTGACTCTTAGCAATGTATCCTCCATTGACTTCCACACAGAGGCTTCAGCTTTGCCTCTCTCAGAAAAAAACCTCCGTATTTGTTTTCCATCATTCTCTTGTGTTGTCTCTACAGTAGAGACTTCCCGATGGAATAAAAGCCTCGGTAAATCCTCTCATTGCCTCTCCCTGTAACACTTGAGCAGTGGGAGGCTCTTAAAAAGCACAGTCACAGATGGAGGGTGGTGGATTTGCTTGCGGGGATCACCATTTACCCTGTGGAGTGGGAggaaaggggggtgggggggggtgtcatccatccatcctttcaCGTTGCCTGCTGACCCGGTTAAGGGATTATTACACACGATGCATCTCCACCGCTACTCTTAATAATCCCATTTTACTGTTCCTCACATCTCTCGTGTGTGACTCTCATGCACCCTCTGCTGCTGTACGGGGCGTCATGTGGCTCTGCTGGTACCGTTTATAGGAGCTGCATTTACTTCTGACATGTCTCCCTGAGAATCCTTTCTCAgatagtttatttttatttttggtatttaacagaaaaataatctagGATTAAACATTTTCCTCTTGGTTTTGTTTCATAGTAGTGATTTTTTGCTTCAAGGCCAAATCCCTACTTGATCGAAATTAACAACACTGCTTAAAAGGTTTGACAATAGCAGCGTGGTTGATTTGCAGGAAAGACTAAGTTAAGATAATGAATATTTTGTCTCTCTGAAAACGGAGAGGGAATTatgtaatttaaaacaaatatattgttTGCATGATCCCACTTTTGAGTATTTTCTCAAGCATTTCATACCTGCCCTTTTTATGTTATGTGTCTCTTCTTGAAaaattaagctttttttttgtttttttttttggtattgaATCAGAGTTTCAAATTGCACTCGTTGATTCAAACCGATCCTCAACACATGGTAAAGTCTGGCAATAGGAAGTCATGCTGTTACTACCACGTATGCTTTTTATTTCCATAAATTTTATAACCCAAGCAGGAAAACTGGAAATGTAAAAGTTTTATCTGCCTTATCAGGTAGATTACGTCTGTTGCCAAATGATTTATTTTGCTTTCATGGAAATATTGTAGCATACATTGAATTATTTGCCCATGTGTATTGGAGAAGAATTTTTATAACAAAGTGGTTGAGTTCTAACtataaacagtataaatgaACATAAAAGCAAAGTGTAACCGTCAAAAAGTTGCTCTTTAGAAAATATTATGTAGACATAGTGATTAGGGGAATTCAGTTCCAGCATAATGTTTTGTTCCTGCTCATTTCCAATCACACACAGAGTGGAATTTTCCAATggatgttgctttttctgaaacATGCATCACAGTTGTTTTACTCAAGAGTTATCACCAGTTGTTATTGAGACATGGGTTTTCATGTTTGAATACTGTCATCAGTGATGATGCATCCAGACATTAGATTCCTTTTCTAATGCAGTAAAGTCTAGTTTTACATGAAAACAAAAGGAGAACAGCCTGATTTCTTCATGTATTTCTAGTCCCAGATGCTCTTCCTCGGAGGACGAGAAGATGAGGGAACGTAACAAACTGATGTACAAACTGCCTTACTcgatattacttttttatgtttgtgcttttttgacaaaaataaataaggtatgAATGCTGATCA

Function

symbol description
arpc5 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion. Part of Arp2/3 protein complex. Biomarker of lung non-small cell carcinoma and lung squamous cell carcinoma.

NR:

description
actin-related protein 2/3 complex subunit 5

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812031.1 True 2854 mRNA 0.41 4 13948948 13954916

Neighbor

gene id symbol gene type direction distance location
trnas-aga_8 NA coding downstream 35586 13913281 ~ 13913362 (-)
anos1b LOC103365427 coding downstream 158957 13746230 ~ 13789991 (-)
LOC120565803 LOC102799307 coding downstream 204168 13734180 ~ 13744780 (-)
pde4ba pde4b,LOC103374815,LOC103137241,LOC101475950,LOC106913875,LOC106953973,LOC102302529,LOC100692702 coding downstream 241977 13510183 ~ 13706971 (-)
sgip1a NA coding downstream 448377 13416878 ~ 13500571 (-)
pla2g4ab pla2g4a coding upstream 16320 13971236 ~ 13994499 (-)
prg4b NA coding upstream 110352 14065268 ~ 14074428 (-)
rfx2 rfx2 coding upstream 190409 14145325 ~ 14173832 (-)
LOC120565955 mllt1 coding upstream 254637 14209553 ~ 14234367 (-)
acer1 acer1 coding upstream 294804 14249720 ~ 14258346 (-)
G95225 NA non-coding downstream 90293 13858322 ~ 13858655 (-)
G95186 NA non-coding downstream 397968 13545295 ~ 13550980 (-)
G95112 NA non-coding downstream 562289 13386312 ~ 13386659 (-)
G95111 NA non-coding downstream 562810 13385879 ~ 13386138 (-)
G95079 NA non-coding downstream 690415 13256374 ~ 13258533 (-)
G95238 NA non-coding upstream 6239 13961155 ~ 13961357 (-)
G95240 NA non-coding upstream 14964 13969880 ~ 13971139 (-)
G95255 pdc,LOC104921827,LOC103137257 non-coding upstream 69865 14024781 ~ 14027650 (-)
G95271 tpr non-coding upstream 93178 14048094 ~ 14048863 (-)
G95277 NA non-coding upstream 97689 14052605 ~ 14056109 (-)
ivns1abpa ivns1abp other downstream 113738 13821943 ~ 13835210 (-)
G94989 NA other downstream 1217979 12727911 ~ 12730969 (-)
kank4 kank4,LOC102229502,LOC106964224,LOC106933507,LOC104958694 other downstream 1500756 12368525 ~ 12448192 (-)
fam183a NA other downstream 1885983 12060266 ~ 12062965 (-)
LOC120565625 tmem125 other downstream 1915106 12012712 ~ 12033842 (-)
LOC120565956 NA other upstream 281623 14236539 ~ 14245111 (-)
dda1 dda1,LOC105939318 other upstream 664428 14619344 ~ 14623046 (-)
lhx9 lhx9,LOC102787388 other upstream 824077 14778993 ~ 14793458 (-)
LOC120565366 LOC103365555,LOC102781831,LOC102293722 other upstream 1208542 15163458 ~ 15173749 (-)
G95680 lsm4,LOC106613629 other upstream 1424591 15379507 ~ 15382862 (-)

Expression


Co-expression Network