si:ch211-199f5.1 (LOC104947498,LOC103352952,LOC100689962)


Basic Information

Item Value
gene id si:ch211-199f5.1
gene name LOC104947498,LOC103352952,LOC100689962
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18927543 ~ 18931474 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817056.1
GCAACAAGCGTATCTGACTGGCTGCGCGCAAAGAGCGAGTAACTTTCACTTCCAGCACAGTTCAGTTCATACAAGCGGGAGCTGCATGGAGAGCTCACTCCAGAGGTGAACTGCTCTCATCTGTTCAGCACACAATGAGGCTGCTTACCGAGGGAAAGATTACTAGGAAGATGATACGGGGCAAATGTATAACTTATTGGCACCGGTGGATTTTTATATTCTCAATCTATCCATTTTTATTTGCCTCACCGGCTCAGTCCGAGGGAAATACTATTCGATACCAGACCAATGAGGAGGACGCGCCAGGTACAGTCATCGGAAACCTTGCCAAGGGCATGTCCTTGAGTCCGTCTCATTCCTCCAAGACCAATTTCAGGATGATGAAACAATTCAATGATTCATTCATCAGGGTAAGAGAAAGCGACGGGGAACTCACAGTCGGGGAACGAATTGACAGGGAAAGAATCTGCAGACACACTCTACAGTGTCTCATCACTTTTGACGTGGTGAATTTCTCCAAAGACCGCTACAGATTGATTCACGTTGAGGTGGAAATAAAGGACATCAATGATAACTCTCCGGAGTTTCCAAACAAGGAATCTGTAGTGGAGATCTCAGAGAACGCAGCATTGGGGTCCCGTATCCCTTTAGACCCAGCTGCGGACGCTGATGTCGGGTCAAACTACATCCAAAGCTATCAGATTTCTGTCAACAGTCATTTTACCATTGATGTGCTCCTGAGAGCGGATGGGGTTAAATATGCGGAATTGGTGCTAATGAAAGAGCTAGACAGGGAGACTCAGTCGTCATTCACTGTGGAGCTGGTCGCCACAGACGGAGGAAACCCTTACAGATCGGGGTCAACAAAGATAACTATCAAAGTGACTGACTTTAATGACAATAGTCCCGTTTTTGACCAGAATAGTTTCTCAGTTAGTTTGCCAGAGGACGCACCGGTTGGCGCTGTTATACTGGACTTAAACGCAGTTGATGCTGATGAGGGTTTGAACGGAGAGGTCGTCTATGGGTTCGGAAAACAGGTTTCTCATGAGATCCGAGGACTTTTCCAAGTGGATAATAAATCAGGTCGCCTGACGCTCAGGAGCCCAGTGGATTTTGAGGACAAAAGCACATATGAGCTAGACATCCAGGCGACTGATCTAGGACCTAACCCGACCCCCTCCGTATGCAAAGTCATAATTTATGTCACAGACGTTAATGACAATGTCCCAGAAATCAGCATCACCCCGATGACCTCCATCACGACAGGCATTGCATACATCAGCGAGGCGGCAGACAAGGACAGTCTGGTGGCGCTGATCAGCACCCTGGACAGAGACTCAGGTGTTAACAGCCAGGTCCACTGCACATTATACGGCCACGACCATTTCAAACTCCGGCAGGCTTACGAGGACAGCTACATGATAGTTACAGCAGCAGTCCTAGACAGGGAGATAATTAGTGAGTATAACTTGACGGTCATGGCTGAGGATTTTGGGTCACCTCCGCTGAGAAAAATCCTTCAGTATACCATTAGACTCAGCGACGAGAATGACAACGCCCCTCACTTTACTAAAGCTGTCTATGAAGTTTCAGTGGTGGAAAACAACGCCCCGGGCGCTTATATCACCACAGTCGAGGCCAGCGACGCGGATCTGGGCAATAATggcaaaattacttacagactTGTGGACAGTGTTATCATGGGGTCCCCAGTGAACACATTTGTGTCTCTTAATTCAGTGTCTGGCTCTATATATGCACTGAGAAGTTTTAATTATGAAGTGATGAAACAGCTAGACATACACATCCAGGCAAGTGATGGGGGGTCACCACAACTGCAGAGCACAGCTGTCATCAGACTAAAAATAGTCGATCAGAATGACAACCAACCTTCTATCATAAATCCACCCCTTTACAAAGGATCTGCTGAGGTTTTCCTGCCCAAAGATGCACCTTCAGGTTATGTGGTAACCCAGATAAAGGCCACAGATGCTGATGAAGGTATAAATGcacagctgtcctataaaatcACAGAGGGGGGACACCTGGGTTTCTCTATCAACAAAGACACAGGGAAGGTGCATGTGAGCCAACAGCTGATGTATGATCTCACAGACAATGTCAAAGTCACAGTATCGGTCAGTGACAATGGATCCCCGGCACTTACCTCTACAGTCATTATACACTTCAGCTTTATAGAAGGAACTCTACCCAGTATGCCTTCCTTGCCTCAAAATGGCAGCGATGAGCTCTTTGAATGGGACATGTCCATAGCCATAATCATTGTCCTGGCGgggagctgctctctcctcttgcTGGCTATCATTCTCATCACAACCATTTGCAGCAGTCGGAAAAAAGAGACAAGGGAGGGGGGGTATGATGAAAAAGAAGACGTAccaaatgtggaaaaagtggAAAGTGGTCATGTTGATTCATTGATTGCCAACCACAAAGGCAAAGTGTTTGATGCCCATCCATTTCCAGAGAATCCTCCATTGGCCAGCAGCAACACAACCGAGACAGGCTGTGAGGATGGCAGGCAGACAGCAGGCATCTTTGAGTCAAACAACAGGGTGATGGAGGGTAAATTAAAGGGTTACTCTACTCTTCCGGGATATGGGAAAGAAACAGTCAGACCAATAACGATATGGAAGGGGAATTCATTCACAACAATCTCCGCAAGAGATCCACACATCAGTGGCAAGGACAGTGGAAAAGGGGACAGTGACTTCAATGACAGTGATTCTGACATAAGTGGagatgtgcacaaaaaagagtCGCCGCCAACAAACAGTCTCTGGGCATGTACAAGCGAGTGCAAAGTGTTGGGACACTCGGACCGATGCTGGAGCCCTTCAGCTACAAGGCCCAACACGAGCATGGCCTGTGGAGCACATCTGTCAACTTTCAACAAGACTGCTTCCCTTCCCAGGAACACCGGAAGGGAAAACTACTATCCAGCACACATACCCAAAACCAACGGTCTGCAAAGTGTGTATGAAAAAGTCCAACACCAGGAATTTGATTATATTCTAGTTGGTCCATCGACACCGGCCAGAATACAGGAAACAGATGAGATGTCCATTCCAGAGTACACAAACTCTTAAAGATCAAAAATACATCCAAAGTGATCCTGTctttatactgtacagtactttTATCTTAATTGACTCTATGTTGGATTGTTGCAGTGTTTTGTAGTATGTTGTGTGTCTTTTGGCTCATATAAGACTGTTCATTATATTATGTGTAATATGCAAGATTTTGTacattaataatatatttttcataATGATGTAATGTAAAGAAGATTTTATTATGAATTTTCAAGAGCATGTGTTACTATTTAAGGGGCATGAGCTATGGACATTTAGGCCAAAAGGGGCCTTTCCGCTGTGAAAAACAATCAATATGAAAGATTACCATGTTTGTGGTAGGTTTTGTCACATTGTTGCACAAATAAACAGTTAAAAGTTAAA

Function

NR:

description
PREDICTED: protocadherin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817056.1 True 3485 mRNA 0.45 3 18927543 18931474

Neighbor

gene id symbol gene type direction distance location
dct dct coding upstream 224991 18695106 ~ 18702552 (+)
sox21b sox21 coding upstream 250061 18675287 ~ 18677482 (+)
LOC120570426 abcc4,LOC103357783 coding upstream 275876 18611360 ~ 18651667 (+)
uggt2 uggt2 coding upstream 346513 18535567 ~ 18581030 (+)
LOC120569834 ino80d coding upstream 693808 18224248 ~ 18233735 (+)
LOC120570212 NA coding downstream 16445 18947919 ~ 18953681 (+)
LOC120570209 NA coding downstream 25219 18956693 ~ 18962174 (+)
frmpd4 frmpd4 coding downstream 110677 19042151 ~ 19076783 (+)
tlr7 tlr7,LOC102778011 coding downstream 145715 19077189 ~ 19082770 (+)
LOC120569791 NA coding downstream 150659 19082133 ~ 19088916 (+)
G125115 NA non-coding upstream 72513 18852566 ~ 18855030 (+)
G125114 slitrk5,LOC100690770 non-coding upstream 75748 18845407 ~ 18851795 (+)
G125110 NA non-coding upstream 97635 18829619 ~ 18829908 (+)
G125109 NA non-coding upstream 98017 18828933 ~ 18829526 (+)
G125104 NA non-coding upstream 98630 18828686 ~ 18828913 (+)
G125266 NA non-coding downstream 535958 19467432 ~ 19468790 (+)
G125267 NA non-coding downstream 560064 19491538 ~ 19586655 (+)
G125274 NA non-coding downstream 619884 19551358 ~ 19551941 (+)
G125369 NA non-coding downstream 816592 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding downstream 860535 19792009 ~ 19801958 (+)
LOC120570507 NA other upstream 99996 18818753 ~ 18827547 (+)
G125079 NA other upstream 223015 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 910130 18010757 ~ 18017413 (+)
hoxd10a hoxd10,LOC102792757 other upstream 1046215 17860160 ~ 17881328 (+)
myo3b myo3b other upstream 1728953 17127881 ~ 17198590 (+)
tmsb4x NA other downstream 157944 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 456541 19388015 ~ 19459274 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 1036886 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 1222381 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 1560704 20492178 ~ 20521274 (+)

Expression


Co-expression Network