sp5a (sp5,LOC103134280)


Basic Information

Item Value
gene id sp5a
gene name sp5,LOC103134280
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17201428 ~ 17204256 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817126.1
TTTACCCTTAGGCTCTAAGCTTAGGCTACATGTTGATGCTCaacaaagaggaaaaaaaaaactaaattaagaaTAAGGTTCTGATAAAACAATGATTGAAATGGGTGAAGGGGCattacacatttaaataattcagAGAGGGCATAATTAAGTGTTTAATGCCATGTTGTAGTTAAAAGGAACAACAAAGGAAATTTAATTCAAATTACAAATGTAAAAGAGACGCAGATTCTTGAGAGATGAGAACTTTGTGTTGAGTCACTTGATTTGGTCTCTTTCCTCCATCAAACAGTCAGGCAGAGCTGGAGATCTCCAGAGATAACAATGTCACATTGTCACATAGGGTTCTGCTACAAATCCTTAATTACAAAAAGAGGATCAGATGACTACAGCATCCAATACCGGGGTCTCCAGGCGGCATGGGGGTCTTTGATCAAGAAAATCCAATTATTTGTGTATATACATTTCCCACATAGTGATTACTTCATTAATTGTCCCGCCTTTATCTCCTCCCTTCCCATCCCCCCTAATAATCAGCTCCTTTATCCAGACCAACAAACACACCATAGGAGCTTTGTGGATTCAAAGGATTTGCTTTCCCCTCTCAAAGAGCCGCTATTCTTTGATGATTGGGCAGCGGCAAACTTCAAAGTAATAAATCTTATTTCTGACTGGCTGGCGGCCCACCAAAGTCCTTATCAAATTCTAAGAAGTGATCCCTCACTCTTCAGATAGACCAAGGATATCTCGGAGAGAGGAAGCACTGGAGAGTGGAGACCTGCTCGACGCGATATTTTACTGCGAATGCACGTATTTAACTAAAttagtgcttttatttttatttgttttcatcgaagaaggaggaggacctTTATCATGGCAGCAGTGGCTGTACTGCGGAATGAAACACTCCAAGCTTTTCTTCAGGATCGCACTCCAAACTCTTCTCCAGAGAACTGTAAGCACTCTCCGCTGGCTCTGCTGGCTGCCACTTGTAACCGGATCGGGCATCACCACGGATCAAACCACACAGATTTCCTCCAGGTCCCTTACGACCCAACTCTGGGCTCCCCTTCGCGTTTATTTCACCCGTGGACTAACGAGGGAACCCCTCAGAGCAGCCTGGCCAGCAACTCTACTTTCGGACTATCCTCCAAACCCCAGCTGTCTGCGCACATCCAGAGCTCCTTCAGCTCGCACCACGAACTGCCCCTCACTCCTCCGGCGGACCCCTCGTACCCCTATGACTTCTCCCCTGTGAAGATGTTACCTTGCTCCATGCAGTCTCTGCAGTCTTCCTGCCCTCCCACCTACGTTCCCGCCGTCAGTTACGCAGCCCCGACTCCCATTCCGCCTGCAATGCCAAGTTTTGTCACGGGACCCTCCGGCCTTGTGCATCAGCAGCAGAGACAGTTATCCCCAAACCCTGGAGAGGATATTCCGTGGTGGAGCCTCCAGCAGGGGAACCATGTCAGTCACTCAGCCTCCCTTGGTCCCCATCGCTTCCAGCTGCAGAGGGGCTTGGTTCTGGGACATACAGACTTTGCGCAATATCAGACGCAAATCGCGGCTCTGCTACACACAAAGTCCCCTCTCGCAACTGCGCGGCGGTGCAGAAGGTGCAGGTGTCCCAACTGCCAGTCCTCCACGTCCAGCGACGAGCCTGGGAAGAAGAAACAACACATTTGTCACATACCGGGATGCGGGAAAGTTTACGGGAAAACTTCTCACCTCAAGGCGCACCTGAGGTGGCACTCTGGAGAGCGGCCGTTTGTGTGCAACTGGCTGTTCTGTGGCAAGAGTTTCACCAGGTCGGATGAGCTGCAGAGACACCTGAGGACTCACACGGGGGAAAAGCGCTTTGTTTGCCCGGACTGCTGCAAGAGGTTCATGAGGAGTGACCACTTGGCAAAACATGTCAAAACTCACCAGAACAAAAAAAGCAAGTGCCATGACAAGACACTTGACCATGTCAAAAGGGAGGACACGAGGAATATGTTGTAACACACCTTGTAGTCATTTAAAACAAGTAGAAATCACTAGTGCAATACAGTCAGTCTTACATTAGCTAAGTACACAGTGAGCTGCATTTTTTTATAgggtattttgtttattttgttggttGATTTCTTACATCCTGACAATAGTCTCAAACATTGCTGGTCTGTGTAGCACATATTTGTATATAAAGTTTCATAAGTTAATTTGGGACCATGGAGAAGTTATAGCTCATGAGTTTGAATTCACTGTCTATATCATACCAAGTAAGACAAGTTTTCAACTTGTGTTTGATCATTGTCTTCGGTGGAAGATTTCACTCCCctgtaaattatatttaatagcTTTTGTTGAATGAAAGTGTCCGTTTTTTGCTCCATATGGGGTGTTTTTAAGCATGCTCTTGAAAAGATCTGCTATTGTTGGTATGACCCAAATACTGTGTGAGAATAAAGATTATAACATTTTCCTCAACTCTAAA

Function

symbol description
sp5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within bone morphogenesis; cellular response to organic cyclic compound; and post-anal tail morphogenesis. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: transcription factor Sp5 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09195 SP5; transcription factor Sp5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817126.1 True 2479 mRNA 0.46 2 17201428 17204256

Neighbor

gene id symbol gene type direction distance location
ubr3 ubr3 coding upstream 74522 17080028 ~ 17126906 (+)
ssb ssb coding upstream 125112 17071013 ~ 17076316 (+)
klhl23 klhl23 coding upstream 130952 17066245 ~ 17070476 (+)
phgdh phgdh coding upstream 135973 17057805 ~ 17065455 (+)
ppig ppig coding upstream 152101 17041882 ~ 17049327 (+)
LOC120570497 gad1 coding downstream 8208 17212464 ~ 17228298 (+)
LOC120569867 gorasp2 coding downstream 34402 17238658 ~ 17250149 (+)
dcaf17 dcaf17 coding downstream 73539 17277795 ~ 17284777 (+)
LOC120569990 LOC102776861,LOC103355056,LOC100702543,LOC105924328,LOC102297804 coding downstream 81162 17285418 ~ 17287800 (+)
dync1i2a dync1i2,LOC103355058,LOC103392097 coding downstream 83858 17288114 ~ 17305093 (+)
LOC120570569 NA non-coding upstream 189516 17010145 ~ 17011912 (+)
LOC120570570 NA non-coding upstream 192920 17006585 ~ 17008508 (+)
G124524 lrp2 non-coding upstream 243514 16956725 ~ 16957914 (+)
G124430 NA non-coding upstream 497499 16703371 ~ 16703929 (+)
G124407 cobll1 non-coding upstream 569087 16598643 ~ 16632341 (+)
G124627 tlk1,LOC102777640 non-coding downstream 52586 17256842 ~ 17257502 (+)
G124631 NA non-coding downstream 57481 17261737 ~ 17262826 (+)
G124661 NA non-coding downstream 233105 17437361 ~ 17437819 (+)
G124671 NA non-coding downstream 265492 17469748 ~ 17498759 (+)
LOC120569550 NA non-coding downstream 400889 17605145 ~ 17614067 (+)
myo3b myo3b other upstream 2838 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 177868 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1099786 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 1223554 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1540414 15618514 ~ 15661014 (+)
hoxd10a hoxd10,LOC102792757 other downstream 655904 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 806501 18010757 ~ 18017413 (+)
G125079 NA other downstream 1498772 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 1614497 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1885162 19089418 ~ 19090785 (+)

Expression


Co-expression Network