LOC120569649 (LOC104952805)


Basic Information

Item Value
gene id LOC120569649
gene name LOC104952805
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19842231 ~ 19844942 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817642.1
ttttgacagtgcTTGTAACAAATTAATCATATCaatgatacaaagctgaattataatataattgacatttttttaattacttttagtTAGCTTACCGGACGCAGTATTTTTGTCAACACATTCACTTGATAAATTGGGCctatagctaaacatttgagtAATTTCTGTCATCGAAAACACCACACACGAAGGAAATACATCAAATGAAAACATACTAGAAATGTGTTATATACCACTTCAGGAGTCAGTTCAATAGCAGAGATCTGGAAATGTAAAGCTGTTGACGAGTGAAGCTATCGTCTCAGTCACTGGCGCCTTTAAGAGGAGAGTGAGCGGAGCTCAGCAACATGAGGCGGGCACAAGAAAGTCTAATGTGACTTTCCAAATAGAAACTCAAGTAGTAGAGCCACTGTGTCAGGGAACACAAACACTTTCCTATTGACTCTTTCCCTATCGGTGCTACGCCACATAGAAGTGAGATATGGCTACTGCTGGCAGTATGCTCACTGAAGAGCAGCTTCTTTGCCCCATCTGTCTGGATTTGTTCAACCAACCAGTCTCCACTCCATGTGGGCACAACTTCTGCAGGGACTGCATACAAGGATACTGGCAGAGCGCTAATCTGTCGCAATGCCCCATGTGCAAGCAAAAGTTCTGCAGGAGGCCTGAGCTCAAAGTTAACACCTTCATATCGGAGGTGGCTTCTCGGTTCAAGAATTCATTGAAAAAGAAAGACGGAAATGAAGCCAGTACCGTGGCCCAATATTCAGGCCATAAAGATGTTgttttgtgtgatgtgtgtgttggaaAAGGAGTCAAGGCTCTTAAATCATGCCTGGACTGTTTGGCCTCCTTCTGTGAGACTCACCTGGAGCCCCATCATGTTCTAGGCACCTTCAAGAACCACCACCTGATCAACCCCATGATGAACATGCAAGACAGAGTGTGTGAGAAGCACAAAAAACTCCTGCACCTGTTTTGTAAAACTGACCAGACGTATGTGTGCCAGATCTGCATTAAGGGAGACCACAATGCTCATCACACTGTACCTATAGAGGATGAGAGCAGAGACAGGAAGGCTCAAATTGGAAGGATAAATGCAGAGGTGGAAGAAATGATCCACGGCCGGCTCGAGAAAATCAGCGAAATCAATCAAACCGTTGAGCTCAGCAGAGAAAACACCGAAAGAGAGATTGAGGAGAGTTTGCAAGTCTTCAACAATCTGCTCCACTTTGTCCAGAGAGGTCAAGCTGAGGTGGTGGAGCTGATTCGTGCAAAGCAGAGGCAAGTTAAAGGCAGGGCCAGGGGACTCATCAtggagctggagcaggagatcgATGAGCTGGGGCGGAGAAACGCTGAGCTGGAGCAGCTCTCCCACACCGAAGACAACCTCTACCTTATCTGGAGCTTTTCAGCTTTCTCCACACTGCCAGCAACCAAAGACTGGTCTGACACCTGCGTAGAGAGTGTTGTGTATGTGGGCACGGTGAGGAGAGCAGTCAGGAGAGTAGCGTGTCAGCTGGAGGAGATAGTaaaggctgaggtgaagaggcTATGCAAGACTGAATTTCAGAGGGCTCAGCAGtgtgctgtggatgtgactctgGACCCTGATACAGCTCATCCCAAACTGATGCTgtctgaaaacaaaaaacaggtcTATCATGGTGATGTAGCGCTGAACCTCCCCGACAACCCAGAGAGATTTTATCCCGGTGTCAGTGTTTTGGGAAAGGAGGGTTTCTCCTCTGGAAGGTTGTACTTTGAGGTCCAGGTGAAAGGCAAGACAGAGTGGGATATTGGAGTTGGGCTTCAATCCATCAACAGAAAAGGAGGGAATACACTAAACCCTGAAACAGGCTACTGGGCCCTGGGGATGAGAAAGGACAAAAGCTACTGGGCCCTCAGCAGCACTCCTACCCTTTTGCCGCTGGTCGGGAAGCCCCAGAGACTCGGGGTGTATGTAGATATGGAGTGGGGGCAGGTTTCTTTTTACGATGTGGACTCTGCTTCACATATCTACTCATTCACTGGATACTCATTCAATGAAAGACTGTTCCCCTACTTTAACCCTCGGCGTAATCATGGCGGAGTCAACTCTGCTCCTCTGATCATCTTGCCTGTCAACGCCTGAAATCTGGCTTTTCATCTCTTCCCGTTGCCTGAATGCTTTCAACTACTTTTTATCATTtgtcattttcaaataaaaagttaaaaaaggtCCAGCGTGATGTTTGCGGCTCGGTTTGCTTTAATAaagtttgtttacttatttGAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817642.1 True 2281 mRNA 0.46 2 19842231 19844942

Neighbor

gene id symbol gene type direction distance location
lrrc58b lrrc58,LOC102790154 coding upstream 8856 19825524 ~ 19833375 (+)
LOC120570226 fstl1 coding upstream 18544 19802234 ~ 19823687 (+)
LOC120569809 NA coding upstream 97459 19741635 ~ 19744772 (+)
LOC120569808 gja8,LOC102792462 coding upstream 105286 19732903 ~ 19736945 (+)
bcl9 bcl9 coding upstream 148933 19661727 ~ 19693298 (+)
gsk3ba gsk3b coding downstream 8360 19853302 ~ 19897288 (+)
si:ch211-214p13.9 NA coding downstream 71150 19916092 ~ 19920420 (+)
si:ch211-214p13.8 NA coding downstream 80056 19924998 ~ 19928946 (+)
si:ch73-390b10.2 LOC102224404,LOC103392127,LOC106959393,LOC103369897,LOC103459619,LOC107099852,LOC100701210 coding downstream 99926 19944868 ~ 19953198 (+)
abhd13 abhd13 coding downstream 292362 20137304 ~ 20142499 (+)
G125369 NA non-coding upstream 27963 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding upstream 40273 19792009 ~ 19801958 (+)
G125267 NA non-coding upstream 255576 19491538 ~ 19586655 (+)
G125274 NA non-coding upstream 290290 19551358 ~ 19551941 (+)
G125266 NA non-coding upstream 373441 19467432 ~ 19468790 (+)
G125397 NA non-coding downstream 54292 19899234 ~ 19899437 (+)
G125465 NA non-coding downstream 62645 19907587 ~ 19907822 (+)
G125480 NA non-coding downstream 85990 19930932 ~ 19937248 (+)
G125482 NA non-coding downstream 97288 19942230 ~ 19942847 (+)
G125501 NA non-coding downstream 171079 20016021 ~ 20016254 (+)
igsf3 LOC103352919,LOC104967650 other upstream 382957 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 751446 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 1014684 18818753 ~ 18827547 (+)
G125079 NA other upstream 1137703 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 1824818 18010757 ~ 18017413 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 123418 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 308913 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 647236 20492178 ~ 20521274 (+)
mpc2b mpc2 other downstream 1008147 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 1015210 20860152 ~ 20865442 (+)

Expression


Co-expression Network