klhl41a (klhl41)


Basic Information

Item Value
gene id klhl41a
gene name klhl41
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17031160 ~ 17035529 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817650.1
gtaaattaaATGAAAGGATCATAGGTTATTTCTGTGTGACCATACAACAGTGTTGTTACAAATCACTAGGGTGACAAGGCTCCACAGTTGTTTTTACTCTTATGACAGCTGTGTGAGCTCTCCGATTTGGCCAACCTGAATTCTTCATGGTTGGGGTGGTTGGCTATATTTAGAGGGGGCACGGTTATATTGAAGTGACTTCAGACCTGGCTGCCTATAGTTCTCGGTCTTCACCAGCTAGGACAGTCTGTGGTAAACACTTCCATTCACGTCCTGTCCTAAAACAATGGATCCCCAAAGCATGAGGGAAGATCtccgtctgtttcagagcactTTGCTGCAGGATGGACTCAAAGAGCTCCTGAATGAGAATAAGTTAATTGACTGTGTCCTAAAGGTTGAAGACCGAAGCATCCCCTGCCACCGGCTCATTCTCTCAGCTTGTAGTCCTTATTTCCGGGAGCTGTACTTCTCAAACGATGGCAAGGAAATGGATCAAATGGAGGTTGTTCTGGAGAACCTGGACCCCGTCGTTATGGAGGCCATTGTAAATCACATGTACTCAGCAGAGATTGACATCAATGACAACAACGTGCAGGATATTTTGGCTGCTGCCAACCGCTTTCAGATCCCCTCCGTGTTCACAGTTTGTGTGAATTATCTCCAGAAGACGCTGTCAAAGAAAAACTGCCTTGCCATCTACAGGCTGGGACTGATGTTGAACAGCGCCAGACTGGCAATGGCAGCTCGAGATTACATTGCAGATCGATTTGAGACCATAGCAAATGATGAGGATTTCTTAGAGCTCGCTCCACCTGAGTTCTTTGCCATTATTGGAGCAGATGCATTGAATGTAGAAAAGGAGGAAGTAGTGTTTGAGACCCTCATGAGGTGGATcagaaaagacaaagagaagcGTGTGAAATCCTTAGAGGAGGCCTTTGAGTGCATTCGTTTCCGTTTGCTCCCAGAGAAGTACTTTAAGGAGAAGGTGGAGAAGGATGACCTCATTAAGGCTGATCCGGAGCTTCtcaaaaaaatcaaagtcaTAAAGGAAGCCTTTGCAGGGAAGCTGCCTGagaagaaaaagggaaaagatgatgaggaaggagaggaggaaaaattGCCCAGCTATCTGAATGATAACCGCAGATACGGCATGTATGCCAAAGACATGATTCTGATGATCAATGACACTGCTGCCGTGGCTTATGATGCCCAGGAGAATGAATGTTTGCTTGCTGCAATGGCTGAGCAGATCCCACGAAACCACGTCAGCCTGGTCACAAGGAAGAACAATCTGTACGTGTTGGGAGGACTGTTTGTGGATGAAGAGGACAAAGAAAACCCATTGCAGTGTTACTTCTACCAGtTGGACAGTCTCACTGCTGAATGGATCGCTCTGCCACCCATGCCCTCCCccaggtgtttgtttgctgTAGGTGAATGTGACAATCTCCTTTTTGCTGTGGCAGGAAAAGATTTACAGTCCAATGAGTCTCATGACACTGTTCTGTGCTATGACATTGACAAAATGAAATGGACTCAAACTAAAAAGTTGCCCTTGAACATCCACGGCCACTGTGTTGTCTCTGAGAACGGGCTGGTGTACTGTATTGGAGGAAAAACAGATGACAATAAAGCAACCAATAAGATGTTTGCATACAGCCACAAGAGGTCAGAGTGGAAAGAAGTGGCTTCCATGAAGACGCCCAGATCCATGTTTGGGGCAGTTATCCATAACGGAAAGATTGTTGTCGCTGGGGGAGTCAATGAGGAAGGCCTCACAGCTGCATGTGAAGCCTATGACTTTGGAACCAACAAGTGGTCACCCTTCCCAGAGTTGCCCCAGGAGAGGAGCTCAGTCAACCTGGTGAGCAGTGGAGGGCAGTTGTACACTGTTGGAGGCTTCGCCTTGGTGGAGAGCGAGAACGAATGCGCACCCAGTGAGATCATCGACATTTGGCTGTATGAAGATGACAAGAAACAGTGGACTGGTATGATCAAAGAGATGCGTTATGCAGCTGGAGCCTCCTGTGTGTCCATGCGTCTAAATGCAGCCAGAATGCCCCATCTGTAACAACAGTCTAGGGACATATAAAGCACGTTCACTTTACTACTGTAGGCAATAATATTATGTACATGCTCTTATTTAGTGGCTTGTTGTCATTTAACATATCACATGTCCTCTTTGCCTGTTCTGAGTGTTTCTATGAAATGTGTTATAGTTTTAATTGGCTTATTTCTTGTGGTTTGGACCAGACTTAGTTGATTCTGATCTTCTAAAACACATCACTTGTTGAGAATTCCCCACTTTCACCCCTTAATTACGAGTTTTTATAATTGTTACTGTTAGCTGGTTAGGTTTGCATAgaaatgttttcttcttttaatcTGAAAATGTTCCTCTTCCAGTCAGTTACAACAAGTACCTTGTAACTCTTCAGTATTacaggtgcactatgagttactgcatggtttcagcgcaatttcatttttggcTCAAATCGTAGGCAGCTCTCCTTGATCCATTAGCTGCCTGCCCCAtaaatacactgtgaaaaagcccggtctcgggggACAACATAGGGGttgtaaacgtcaaacaaacactagaggcacaggctgtgcaccaaaatacaacaaaccactccagccaatcaccgacaagatggttgggggtgggggttagtgacaaTAATAACAGAAGCATGGGGGGAGGgccgagcttgctctgttttgtttggtatttacttggaacgtcaaccgaagtgaccatgcaggaactcatagtgcacctttaaaacaATATCTCCACAGGCTTACTGTGTCTGTTTGACCTTTTAGATTGGTTTGTTTTCAAGCAATACTACACGGCTCATATGATTATTCAAAATAGTGTGGCCCTGTCATGACAAGTtccacttaaaatgttttaatgctgTTGTATGAGAAGTCACTAGTATAGTCAGAACAGATTGGATTAAACTTATAAAGGTTCAGTTAAATGTTGAGGCCTTTTTAATGTATGAATAAGAGTCTGGATAGGTCACATATGTAAGGGATAAAATCTAGTCTTGGGAAAATGTCTGCCGATGTTCACGTTCAAAAGCTCTACAATCACAGTTTAAATCTTTGTGTGAATTTGTAAACGATACTCCCAAAGAGGACTGATGGAAACCTTGGCTCCTGTTGACGCTCTGCATATTGACTAGTCTAGCAAAATGCATGATAGCCAGTTTGTTGAGCAACACTGATTGCTGAtcatgttagattttttttttttttaaagataatgaagctttatattttattaaaaatatttcattttaatgcaCAATCTCACTTAACATGAACGAGGTAGATTCATGTCAACTTTGCGCTCAATAGAGTAAGGAACACTTGATGTATATTAACAGTtttcaaaacactgtcaaaGTGTTAAATGCAACATTACTTTCATTATTCAATAAATAAAGGCCTTCAAGAAGAAA

Function

symbol description
klhl41 Involved in protein ubiquitination. Located in several cellular components, including cytosol; nucleoplasm; and sarcoplasmic reticulum membrane. Part of Cul3-RING ubiquitin ligase complex. Implicated in nemaline myopathy 9. Biomarker of hypertrophic cardiomyopathy.

NR:

description
LOW QUALITY PROTEIN: kelch-like protein 41

GO: NA

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817650.1 True 3494 mRNA 0.43 6 17031160 17035529

Neighbor

gene id symbol gene type direction distance location
bbs5 bbs5 coding upstream 445 17026365 ~ 17030715 (+)
rdh1 LOC102203631,LOC106926445,LOC103461719,LOC103134343,LOC100699208 coding upstream 93065 16930122 ~ 16938095 (+)
LOC120570363 NA coding upstream 101775 16919996 ~ 16929385 (+)
LOC120570362 NA coding upstream 111327 16910073 ~ 16919833 (+)
LOC120570364 g6pc2 coding upstream 137059 16892198 ~ 16894101 (+)
ppig ppig coding downstream 6353 17041882 ~ 17049327 (+)
phgdh phgdh coding downstream 22276 17057805 ~ 17065455 (+)
klhl23 klhl23 coding downstream 30716 17066245 ~ 17070476 (+)
ssb ssb coding downstream 35484 17071013 ~ 17076316 (+)
ubr3 ubr3 coding downstream 44499 17080028 ~ 17126906 (+)
LOC120570569 NA non-coding upstream 19248 17010145 ~ 17011912 (+)
LOC120570570 NA non-coding upstream 22652 17006585 ~ 17008508 (+)
G124524 lrp2 non-coding upstream 73246 16956725 ~ 16957914 (+)
G124430 NA non-coding upstream 327231 16703371 ~ 16703929 (+)
G124407 cobll1 non-coding upstream 398819 16598643 ~ 16632341 (+)
G124627 tlk1,LOC102777640 non-coding downstream 221313 17256842 ~ 17257502 (+)
G124631 NA non-coding downstream 226208 17261737 ~ 17262826 (+)
G124661 NA non-coding downstream 401832 17437361 ~ 17437819 (+)
G124671 NA non-coding downstream 434219 17469748 ~ 17498759 (+)
LOC120569550 NA non-coding downstream 569616 17605145 ~ 17614067 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 7600 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 929518 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 1053286 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1370146 15618514 ~ 15661014 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other upstream 1457312 15506984 ~ 15573848 (+)
myo3b myo3b other downstream 92352 17127881 ~ 17198590 (+)
hoxd10a hoxd10,LOC102792757 other downstream 824631 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 975228 18010757 ~ 18017413 (+)
G125079 NA other downstream 1667499 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 1783224 18818753 ~ 18827547 (+)

Expression


Co-expression Network