b3galt1b (b3galt1)


Basic Information

Item Value
gene id b3galt1b
gene name b3galt1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16776449 ~ 16832994 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819125.1
TGCACTAGCCATCATGTTTCCTCCCCCCTGGTCGAATAACAGTGCTTTAGGATGCTGGAGCAAAGCAGTAAACGTATCATCAGGACCAGAAGTCTGAGTGGGATGGAGACACTGAGTGAGatGTAAATGGAGAAGCAGCAGTGTCACCAAGAGAAAGTGGATGCCCATATGATTTTAAAGTGCTTTGcattaaaacacaaacagcaTCACTTCTCTCTAAAATAATCCATTACTGACAATTAATGTCAAACTGCACGCTGGAGCAGCTACATGCTGCCTCGCTGGGTGAAACATTGCTAATGGAAAGAAAGCCTTATAAGGTCCAGCTGATCAAAATACACCTAAATGCAGCATAATGCCTTCAAAAGTGTCATGTTTATACCTGTTGACAGTGGTTTGCTGGGCGAGCGCTCTGTGGTACTTGAGTATATCTCGCCCAACATCCACTTATGTCGGTCACATGTCTGTGCCTATACGTAAGGCTGCGAAACCCCCAAAAAACATCACCTTCACCAACATCCACACCCGCCCCCTTAACCCACATGCCTTTGAATTTGTCATCAATGAGCCGAAGAAGTGCGAAAGTGCCGCTCCCTTCCTGGTCATCCTCATTAGCACCACGCACAAGGAATTTGATGCGCGGCAGTCAATTCGGGAGACCTGGGGGGATGAGAGCACCTTCGGCGACATCCGCATCCTCACCATCTTTCTGCTGGGCAGGAACACGGACCCCGTCCTGAACCAGATGGTGGAGCAGGAGAGCCAGATCTTCCACGACATTGTGGTGGAGAACTTTATTGATTCCTACCACAACCTCACCCTCAAGACCATGATGGGCATGCGCTGGGTGGCTACCTTCTGTCCCAAAGCGCAGTATGTCATGAAGACCGACAGCGACATCTTTGTCAACATGGATAATCTGATCTACAAGCTCCTGAAGCCCACCACCAAGCCAAGAAGAAGATATTTCACTGGCTATGTTATAAATGGTGGTCCCATAAGGGATATGCGCAGTAAGTGGTACATGTCCAGGGACTTGTATCCTGACAGTAAATACCCACCCTTCTGCTCGGGCACTGGCTACGTGTTCTCTGCTGATGTTGCTGAGTTAATCTTCCAGACTTCATTACACACAAGACTGTTGCACCTGGAGGATGTGTATGTGGGACTGTGTTTGCGTAAGCTGGGTATACACCCGTATCAGAACAGTGGTTTTAATCACTGGAAAATGGCCTACAGTCTGTGCAGGTACAGGCGGGTTATCACCGTGCACCAGATCTCCCCGGAGGAGATGCACCGCATTTGGAACGACATGTCCAGCAAGAAGCACCTGAGGTGTTAGGGGGCACGAGGGCCACTGAACAACTcctttttttgttgcctttttctccttttaAATCTCATCACAAtgagaaatgtaaaaacattgaGGGCTGCTGCAAGTCTCTATTTTACGACGGATGTTTTCATTAACATTCATTTATGTCTATTTCTGCTGATTACACCTCACAACTGTTAATGAATGCATGAGGCTTGTAAAGCGCGTATTCTCATGCATAATTAAAATGTGGTGTTTGTTACTGAAAGACATTTGGTTCATGTATTCCAGGTACAACTTTAATATAGAAAGTTCTTTATGAGCATTAAGTCAATCAGCATTTGGCCGTGTGGCCTAATGGGTAGAGAGACTCCACTTCAACCAGACAATGTTTGGTTTAAGCTCACACTGACAACCTTCTTCCCTGctaaagtgtccttgagcaagacactggaTCTCTACCAGCTGCATGGCTGCTGACTTAGCACCATGATCTTCCTGCAGGACAGCAAGCCAAAAGAGAATTTCTTTGCAGGAAAAATAAAGTATCAAATTAGTATATTACATCTATAATATCATACATTTTAGAAGTATTATTTGCAAATGAAAGACGAATTCCTGAACAATGACAGTGCAAACAGTTATCATATCCAACAACAAACCTGGTCGTCTTTTGAGGTAAAACTACATTTGCACTCATGCTGCTCTCcccttttttcatctttatcATAAAAGCTGTCAGGTACTAAGCTGAAAATAAGATGCAGTATATCATCACTCTCCAAACAGACCAAGTTAAAAGATAATTTGATATTTTTCTCTTGCATTGGCAAAAATGAAACCACCTAGCTGTattaacttttttatgaatttgccTGATGTTCTTATTTACATATTGTTATAATTTCGCTGCCTCTTCTCTATGAAAAAGTTAGatgtatgttttgttgtttctcCTCTTCGGCATTTTTATACTTGGTAATTGTGTGTCTCAGCTACCAGCTCCTCATTAATCCAGCTGCTGCTCTTGTATGCTGTATACGTCAGCAGCTATTTCAACTCATCGCCTCCTCACATATCAAGAGAAATACAGCAAGTATGAGTTTAACTGTAACTAAGACCATTACAGACTGGATGTATTATCATATGTATCTGGCATATCAGTGATTGCTGAAGCACTGCTACTGAAATCATGGAAAAATTCTGTGTTTCTCAGAAAATGTGACTTTCATGGCcaaatttttcttttcttttttcaagagTTTTGTAGTATTAAAAGCTAATGTGACATTTACTGTGAAAGCATCTATCCCGCAAGGGGTTGTTGttatatattgtatgttttttatattaaaaaacaaatgcttGACTTCCCTGTTAAAGGGTTA
>XM_039819126.1
TCCTCCCCCCTGGTCGAATAACAGTGCTTTAGGATGCTGGAGCAAAGCAGTAAACGTATCATCAGGACCAGAAGTCTGAGTGGGATGGAGACACTGAGTGAGGTGAATATCTGCATCAAACGCTAATCTCCTCATTCAACCACATGATGGTTTCCATTACATGTCCATCTTGTCGTACAatGTAAATGGAGAAGCAGCAGTGTCACCAAGAGAAAGTGGATGCCCATATGATTTTAAAGTGCTTTGcattaaaacacaaacagcaTCACTTCTCTCTAAAATAATCCATTACTGACAATTAATGTCAAACTGCACGCTGGAGCAGCTACATGCTGCCTCGCTGGGTGAAACATTGCTAATGGAAAGAAAGCCTTATAAGGTCCAGCTGATCAAAATACACCTAAATGCAGCATAATGCCTTCAAAAGTGTCATGTTTATACCTGTTGACAGTGGTTTGCTGGGCGAGCGCTCTGTGGTACTTGAGTATATCTCGCCCAACATCCACTTATGTCGGTCACATGTCTGTGCCTATACGTAAGGCTGCGAAACCCCCAAAAAACATCACCTTCACCAACATCCACACCCGCCCCCTTAACCCACATGCCTTTGAATTTGTCATCAATGAGCCGAAGAAGTGCGAAAGTGCCGCTCCCTTCCTGGTCATCCTCATTAGCACCACGCACAAGGAATTTGATGCGCGGCAGTCAATTCGGGAGACCTGGGGGGATGAGAGCACCTTCGGCGACATCCGCATCCTCACCATCTTTCTGCTGGGCAGGAACACGGACCCCGTCCTGAACCAGATGGTGGAGCAGGAGAGCCAGATCTTCCACGACATTGTGGTGGAGAACTTTATTGATTCCTACCACAACCTCACCCTCAAGACCATGATGGGCATGCGCTGGGTGGCTACCTTCTGTCCCAAAGCGCAGTATGTCATGAAGACCGACAGCGACATCTTTGTCAACATGGATAATCTGATCTACAAGCTCCTGAAGCCCACCACCAAGCCAAGAAGAAGATATTTCACTGGCTATGTTATAAATGGTGGTCCCATAAGGGATATGCGCAGTAAGTGGTACATGTCCAGGGACTTGTATCCTGACAGTAAATACCCACCCTTCTGCTCGGGCACTGGCTACGTGTTCTCTGCTGATGTTGCTGAGTTAATCTTCCAGACTTCATTACACACAAGACTGTTGCACCTGGAGGATGTGTATGTGGGACTGTGTTTGCGTAAGCTGGGTATACACCCGTATCAGAACAGTGGTTTTAATCACTGGAAAATGGCCTACAGTCTGTGCAGGTACAGGCGGGTTATCACCGTGCACCAGATCTCCCCGGAGGAGATGCACCGCATTTGGAACGACATGTCCAGCAAGAAGCACCTGAGGTGTTAGGGGGCACGAGGGCCACTGAACAACTcctttttttgttgcctttttctccttttaAATCTCATCACAAtgagaaatgtaaaaacattgaGGGCTGCTGCAAGTCTCTATTTTACGACGGATGTTTTCATTAACATTCATTTATGTCTATTTCTGCTGATTACACCTCACAACTGTTAATGAATGCATGAGGCTTGTAAAGCGCGTATTCTCATGCATAATTAAAATGTGGTGTTTGTTACTGAAAGACATTTGGTTCATGTATTCCAGGTACAACTTTAATATAGAAAGTTCTTTATGAGCATTAAGTCAATCAGCATTTGGCCGTGTGGCCTAATGGGTAGAGAGACTCCACTTCAACCAGACAATGTTTGGTTTAAGCTCACACTGACAACCTTCTTCCCTGctaaagtgtccttgagcaagacactggaTCTCTACCAGCTGCATGGCTGCTGACTTAGCACCATGATCTTCCTGCAGGACAGCAAGCCAAAAGAGAATTTCTTTGCAGGAAAAATAAAGTATCAAATTAGTATATTACATCTATAATATCATACATTTTAGAAGTATTATTTGCAAATGAAAGACGAATTCCTGAACAATGACAGTGCAAACAGTTATCATATCCAACAACAAACCTGGTCGTCTTTTGAGGTAAAACTACATTTGCACTCATGCTGCTCTCcccttttttcatctttatcATAAAAGCTGTCAGGTACTAAGCTGAAAATAAGATGCAGTATATCATCACTCTCCAAACAGACCAAGTTAAAAGATAATTTGATATTTTTCTCTTGCATTGGCAAAAATGAAACCACCTAGCTGTattaacttttttatgaatttgccTGATGTTCTTATTTACATATTGTTATAATTTCGCTGCCTCTTCTCTATGAAAAAGTTAGatgtatgttttgttgtttctcCTCTTCGGCATTTTTATACTTGGTAATTGTGTGTCTCAGCTACCAGCTCCTCATTAATCCAGCTGCTGCTCTTGTATGCTGTATACGTCAGCAGCTATTTCAACTCATCGCCTCCTCACATATCAAGAGAAATACAGCAAGTATGAGTTTAACTGTAACTAAGACCATTACAGACTGGATGTATTATCATATGTATCTGGCATATCAGTGATTGCTGAAGCACTGCTACTGAAATCATGGAAAAATTCTGTGTTTCTCAGAAAATGTGACTTTCATGGCcaaatttttcttttcttttttcaagagTTTTGTAGTATTAAAAGCTAATGTGACATTTACTGTGAAAGCATCTATCCCGCAAGGGGTTGTTGttatatattgtatgttttttatattaaaaaacaaatgcttGACTTCCCTGTTAAAGGGTTA

Function

symbol description
b3galt1 Enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity. Involved in galactosylceramide biosynthetic process; lipid glycosylation; and oligosaccharide biosynthetic process. Predicted to be active in Golgi membrane.

NR:

description
beta-1,3-galactosyltransferase 1

GO: NA

KEGG:

id description
K07819 B3GALT1; beta-1,3-galactosyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819125.1 False 2706 mRNA 0.42 2 16776449 16832994
XM_039819126.1 True 2765 mRNA 0.42 3 16776467 16832994

Neighbor

gene id symbol gene type direction distance location
xirp2b xirp2,LOC102308033,LOC104949804 coding upstream 1144 16757646 ~ 16775305 (+)
galnt3 galnt3,LOC102786846 coding upstream 63771 16704149 ~ 16712678 (+)
ttc21b ttc21b coding upstream 73154 16690517 ~ 16703295 (+)
scn1laa LOC103371728,LOC103392165,LOC101464243 coding upstream 90963 16659981 ~ 16685486 (+)
slc4a10b slc4a10 coding upstream 399221 16344035 ~ 16377228 (+)
cers6 cers6,LOC102785199 coding downstream 27416 16860410 ~ 16876464 (+)
nostrin nostrin coding downstream 44715 16877709 ~ 16886192 (+)
LOC120570364 g6pc2 coding downstream 59204 16892198 ~ 16894101 (+)
LOC120570362 NA coding downstream 77079 16910073 ~ 16919833 (+)
LOC120570363 NA coding downstream 87002 16919996 ~ 16929385 (+)
G124430 NA non-coding upstream 72520 16703371 ~ 16703929 (+)
G124407 cobll1 non-coding upstream 144108 16598643 ~ 16632341 (+)
G124408 NA non-coding upstream 146335 16596708 ~ 16630114 (+)
LOC120570498 NA non-coding upstream 307813 16468040 ~ 16468636 (+)
G124371 kcnh7 non-coding upstream 359997 16414609 ~ 16416452 (+)
G124524 lrp2 non-coding downstream 123731 16956725 ~ 16957914 (+)
LOC120570570 NA non-coding downstream 173591 17006585 ~ 17008508 (+)
LOC120570569 NA non-coding downstream 177151 17010145 ~ 17011912 (+)
G124627 tlk1,LOC102777640 non-coding downstream 423848 17256842 ~ 17257502 (+)
G124631 NA non-coding downstream 428743 17261737 ~ 17262826 (+)
dap1b dapl1 other upstream 674807 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 798575 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1115435 15618514 ~ 15661014 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other upstream 1202601 15506984 ~ 15573848 (+)
trpm2 trpm2 other upstream 1617512 15137587 ~ 15158937 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 155077 16988071 ~ 17023560 (+)
myo3b myo3b other downstream 294887 17127881 ~ 17198590 (+)
hoxd10a hoxd10,LOC102792757 other downstream 1027166 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 1177763 18010757 ~ 18017413 (+)
G125079 NA other downstream 1870034 18703028 ~ 18704528 (+)

Expression


Co-expression Network