G21228


Basic Information

Item Value
gene id G21228
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 32754573 ~ 32821246 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU28892
GCTTCTCATGAGAAGGTGAATTACAATATGGTGTCAAGTTTACAAAGACAGCGGAGCTTCACAATAGCCAGTGTTCAGCTGAAAGGAGACGATAATAGGAAGAGTGGTGGCagttaatattaataacaataatacataTAGCAACAGCAAGAATGTCAATTTATGTACACAATATTATCCCTGAACAGTTACACTGCACTCATTCCCAATCATtcattacacaacacacacaataatttgTTTTCCCTGACATGAATGCAAGTAGAAATCAGATATGGTCACACAAAGTCATCACAGTAGTCATGAAAACATTGGCAGCACTCTACTTTGAGAGCATGTTTCCTCTCGCTTAAAAAGTTGGAGTCTGCGATTCTAATTCGATACACTGTCAAATTCAGGGACTATCTCCTCACGGCCCGCTAGCTgaccgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtTAAGTCAGTG
>TU28894
GCTTCTCATGAGAAGGTGAATTACAATATGGTGTCAAGTTTACAAAGACAGCGGAGCTTCACAATAGCCAGTGTTCAGCTGAAAGGAGACGATAATAGGAAGAGTGGTGGCagttaatattaataacaataatacataTAGCAACAGCAAGAATGTCAATTTATGTACACAATATTATCCCTGAACAGTTACACTGCACTCATTCCCAATCATtcattacacaacacacacaataatttgTTTTCCCTGACATGAATGCAAGTAGAAATCAGATATGGTCACACAAAGTCATCACAGTAGTCATGAAAACATTGGCAGCACTCTACTTTGAGAGCATGTTTCCTCTCGCTTAAAAAGTTGGAGTCTGCGATTCTAATTCGATACACTGTCAAATTCAGGGACTATCTCCTCACGGCCCGCTAGCTgaccgctgtgtgtgtgtgtgtgtgtAGGGTGTGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28892 True 470 lncRNA 0.41 2 32754573 32806155
TU28894 False 462 lncRNA 0.45 3 32754573 32821246

Neighbor

gene id symbol gene type direction distance location
map3k10 map3k10,LOC102787573 coding upstream 86020 32628832 ~ 32668553 (+)
LOC120545987 LOC101069675,LOC103364515,LOC107380274,LOC108240955 coding upstream 214275 32534436 ~ 32540298 (+)
six9 LOC104961124,LOC100703566,LOC101476199,LOC102305195,LOC102786478,LOC103364516,LOC102210161 coding upstream 226730 32524837 ~ 32527843 (+)
six5 six5,LOC104961111,LOC102200980 coding upstream 230065 32516358 ~ 32524508 (+)
mrpl28 mrpl28,LOC102797368 coding upstream 307197 32444009 ~ 32447376 (+)
c2h19orf54 clg14h19orf54,LOC102791611,LOC102297608,LOC102205645,LOC101483057,LOC104956263 coding downstream 21175 32842421 ~ 32848060 (+)
gfm1 gfm1,LOC102793859 coding downstream 48739 32869985 ~ 32884550 (+)
wdr53 wdr53 coding downstream 69804 32891050 ~ 32894361 (+)
cux1b cux1 coding downstream 112277 32933523 ~ 32997587 (+)
LOC120548751 sh2b2 coding downstream 180358 33001604 ~ 33030319 (+)
G21207 NA non-coding upstream 2282 32671859 ~ 32752291 (+)
G21224 NA non-coding upstream 18732 32735316 ~ 32735841 (+)
G21144 sipa1l3 non-coding upstream 201058 32550832 ~ 32553515 (+)
G21134 NA non-coding upstream 243314 32510569 ~ 32511259 (+)
G21131 tbcb,LOC102785709 non-coding upstream 247306 32503638 ~ 32507267 (+)
G21253 NA non-coding downstream 28078 32849324 ~ 32851867 (+)
G21257 NA non-coding downstream 59153 32880399 ~ 32884968 (+)
G21400 NA non-coding downstream 396776 33218022 ~ 33231483 (+)
G21417 NA non-coding downstream 459161 33280407 ~ 33280664 (+)
G21418 NA non-coding downstream 459710 33280956 ~ 33281661 (+)
G20956 NA other upstream 1032087 31719505 ~ 31722486 (+)
G20954 strn4 other upstream 1040694 31706623 ~ 31713879 (+)
si:dkey-202l22.3 LOC104943829,LOC104918037,LOC103136259,LOC106934030,LOC106953837 other upstream 1122933 31620993 ~ 31631640 (+)
fxyd6 LOC104918006,LOC103361032 other upstream 1296962 31448803 ~ 31457611 (+)
tmprss13a NA other upstream 1309220 31433345 ~ 31445353 (+)
G21267 NA other downstream 75378 32896624 ~ 32897563 (+)
LOC120573710 col26a1,LOC102078035 other downstream 77111 32898357 ~ 32919023 (+)
stx1a stx1a,LOC102292079,LOC102198818,LOC102795677,LOC108240947 other downstream 220153 33041399 ~ 33129974 (+)
trim59 trim59,LOC102781275 other downstream 441500 33262746 ~ 33274010 (+)
LOC120547286 mbnl1 other downstream 1022118 33843364 ~ 33919945 (+)

Expression


Co-expression Network