ngef (ngef)


Basic Information

Item Value
gene id ngef
gene name ngef
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44828011 ~ 44867095 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785672.1
TAATTACAGCTTAGGCAGAGATAGGTGACACACTCTCCTGGTTCCACAGGCTGCATGCGTAGGTAACAACTCTGCTGTTCCACTGACAGGAGGGACACAGGGCCCAGAAACCACTTTCCTTGTTCTCAGAGATTTATTTTTCACCAGAATTTCAGTCATGGATTTGTTCCTGGATTCTGGCTAAATATGACAGATTTCTTTCTGCCAGTGTCAAGCAGTCAGTCAAACTGGATTTACCAAATTTAAAGGACAAGGGATTATTTGCCATGTCTGTGACTGCCCTGTTCAGAGGCAAGTGGGGGCACAAGTCACAGGAAACCCCAGAGAAGCATCCAGTAGCTGTGGTCCAACCCAGCCATGAGGACGAGGATGACGAGGATGACTCCAGTGTTGGTTTCAGCAGAGAGCCTATTCGCAGGAACTCGCGCTTTTACCGGTCAATGAGAAAGAAGAGGATGGTCTCATCTGAGCAGTCTGAATattctcccaggcctggtttgGACCCCAGTCCGTCTAACAGATCAGGACTCATCTCCCCTAATGCTCCTTTATGCCCCAAATCACCTTTTTTGCCCAGGGCTAGACGATGTAGCCCTCAGCCTTCACCACAGCTCCATCATTCCAAAACTGTGTTGCCAAGCAATGGGGAGGCCAGCAGCAGACATGCTCTGTACAACAGCGATGCTGTGGataggagaagaggaggagtgggaggagggaggagtttGGACATATCTGCTGCCTCCAACAGCCAGCATCGAGATTTTACAGCTGACATGATCACTTACCGGACTCACAACATTCATAGCGAAGACATTATAAAGCTGTCGGAGCAAACAGCTGCAGCTTGCACTGTTCAGGAGATCAGAGGGAAAACCATGAGCTCACAACGGCCCAATTCTAACAGCACAGACCAGGATAACGCCAACCTCAGgTTTCCAAGCAATGGAGCTCGCTCCCAGACAATCTGCCACAGCCTCAACATCGTCAAAAACATTGCATTCCTGTACCAGGAATACCGGGACACTTCCAAGCAGCAGGAGATCGAGCAACGGCGGCAGCGTGAGAACCTTTGTCCAAAGGTCACAGCAGAGACTGTGGTGGCAGGCTCTGGTGTCACGTCCCCTCCAGTGTTACAGCTGCAGCTGAGGAACAGTTCTCGGTCACTGAGCTTGTGGCAGAACCTGGAAGCTGTGCAGGCCAGTGGCTTGCTCACCCAGTTACCGCAGAAAGAAATCATAATGCAAGAGGCCACGTTTGAGCTCATTACCTCAGAAGCATCATACTACAAAAGTTTGGAAATTTTGGAGACTCACTTCCTACGTGACCCTGGTTTAATCAACACTCTAAGCCAATCCGATGTGCATTTTCTGTTCTCCAACATTGAGGAAGTCATGAAAGCCAGTGAAAGGTTCCTGATGGATCTTGAGCACCGAATTGAGAAGTCTATTTTGATCCCTGATGTGTGTGACATTGTTTACCACCATGCTGTGGAACACTTCAATGTCTTCATCAAATACGTCATTAACCAGGTGTACCAGGAGAAGAACTACAGACGCATATTAGAGGGAAACCAGGCATTTCGGGAAGCCATGGCTGCACTGGAGAATCATCCACATGTCAGGGGCCTGTCCTTCACCTCGTTCCTAATCCTTCCTTTCCAGAGGATCACAAGGCTCAAGATGCTTGTACAAAACATCCTGAAAAAAGCAGACGAAAACTCAGAGAGGGAAGCAAATGCTATAAAAGCACATCAGCAACTGGAGCAGATTGTGAAAGAGTGTAACGAGGGGGTGCGAAAAATGAGTCGCACTGAGGAGCTAATCAGCATTGAGAAAACACTGGAGTTCAAATCCAAGTCTGTGCCCATCATTTCCCACTCGCGCTGGTTGCTAAAGAAGGGTGAAGTGCAGCTGATGGCTGGACCGAAGAGTACCAGGACCATGCGGAGTCGTAAGCTCTACCAACCGGTCTACTTGTTCCTTTTTAACAATCTGCTGCTGGTCACCAAGCGCAGCTCAAGTGGGGAGAAGTTCCAGGTTCTTGACTCATGCACACGGGCCATGTTGAGGACTGAAGATCTTGAAGACCAGGGCCAGCTACTGGCCAATGTCTTTAATCTTAAACTGCTGGAGAACCAAGAGGAGCGTCCAGTCAGCTACATGCTCAAGACCTGCAGTATGAGTGATAAGCTTCGATGGATGTGTGCTCTCACTCCTAACCGACGCACACGCTTCATGTCTACTAGTGCCCACCAACCAGACTCTCCCCAGGTGCAGTGTATTCAGTCGTACTCGTCTCAGGAGCCAGATGAACTCTCTATTGAGATGGCTGATGTTTTGAACCTCCTAGAGAGAACAGACGATGGCTGGATGATGGGTGAAAGGCTCCATGATGGCGAAAGTGGCTGGTTCCCTAGTCGAGTAGTAGAGGAGATCCAGAGCAAGGAGGTCCGAGCTCAGAATCTAAGAGAGGCCTTCAGGATTCTGCAGGCCCAGGAAGGTGGAGGAGGCCCGCCAACTGGAACCAGGGTTGGTTTAAGGGTGGGGAGACGCACCCCACGGGCCTCCAACTTCTCCAACCCCTGAATTGATCAAATGGGGGAGAGCAGTAGAGTAAATCAGTGAAGCAGTAACAGTGATGAATGTCTCCATTCAGGGCCAAGTGCGCTAAAACTAATCAGGATACATGTGACTTAAATCCCATACAATGGCATCTTGTGCTTTTGATTTTCACTTTTAGAAATCCAAATGATCAACGTGTTTAAGTCGATAACCTTGTACAAGCAAtgctgcatgtctcatataaaCGTGTGCTGAAGGTGTTTTGTAGGCCCAAACACTGTGGTGTGTAATGCATGGAGGAAAGCTCTGTGTTTCATTAGGAGCGGTGTGCAAGGATGGCAAGAATCCTAAAAGTCTTGTAAAGGTACTGTACTCattagtgatggccaaatgaagcatCGTGAAGGTTTGTGAACCATTGTCTGTATTTTCTAAGCctactagatggcgctctctgctcaacaaagggttgaaatcACACTGAGTTGCCATTCCTtaagccatttctttaaacaaaagagcgccatctagtggcctcagaaaataaataatatgctTCACAAGGCTTCATGAAGCTTCTTTTGCCCATCACTAGTAAACATTCCTCAGCTGCATGGGCAAGTTTTAAAATTTTAATGTGttaattttattgtaaaatacctgTCAACACTGAGTTATATCCCAcaacgcaaatagacaaaataaaacacgctGCAAAAATCGGTGCATTGGGCTTTCAGGGCCACTGTACAAGTGTCTAATAAAATTGTCTTGTATAAAAATTAGCAATGATTATTTTAAAAGCCtgttaggggtggtacggttcacaaaacccacggttcggttcgtatcacggttttagggtcacggttttcggttcagtacggttcttattttttctttaa

Function

symbol description
ngef Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Orthologous to human NGEF (neuronal guanine nucleotide exchange factor).

NR:

description
PREDICTED: ephexin-1

GO:      GO:0005089,GO:0032319

KEGG:

id description
K07525 NGEF, EPHEXIN, ARHGEF27; neuronal guanine nucleotide exchange factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785672.1 True 3469 mRNA 0.47 15 44828011 44867095

Neighbor

gene id symbol gene type direction distance location
nf1a nf1 coding upstream 607454 43826569 ~ 44220557 (+)
LOC120572363 NA coding upstream 1092474 43724141 ~ 43735537 (+)
LOC120545596 vezf1,LOC103355252 coding upstream 1164382 43610083 ~ 43663629 (+)
LOC120551880 NA coding upstream 1347685 43478606 ~ 43480326 (+)
LOC120554170 NA coding upstream 1404080 43407185 ~ 43423931 (+)
LOC120551895 NA coding downstream 27379 44894474 ~ 44895469 (+)
LOC120551903 NA coding downstream 66772 44933867 ~ 44934670 (+)
LOC120551909 NA coding downstream 78923 44946018 ~ 44947037 (+)
pipox pipox coding downstream 502277 45369372 ~ 45448620 (+)
LOC120551915 LOC107740693 coding downstream 1057267 45924362 ~ 45934115 (+)
G23909 NA non-coding upstream 2985 44823090 ~ 44825026 (+)
G23907 NA non-coding upstream 7891 44816641 ~ 44820120 (+)
LOC120553110 NA non-coding upstream 53520 44773318 ~ 44774491 (+)
G23900 NA non-coding upstream 72760 44755024 ~ 44755251 (+)
G23889 NA non-coding upstream 124941 44702709 ~ 44703070 (+)
G23927 NA non-coding downstream 9703 44876798 ~ 44880514 (+)
G23942 NA non-coding downstream 30564 44897659 ~ 44906185 (+)
G23948 NA non-coding downstream 60373 44927468 ~ 44927850 (+)
G23985 NA non-coding downstream 451378 45318473 ~ 45319165 (+)
G23995 NA non-coding downstream 471388 45338483 ~ 45338830 (+)
LOC120574587 msi2,LOC103377698 other upstream 125562 44230372 ~ 44702449 (+)
G23673 LOC107727923,LOC107666201 other upstream 1256997 43552207 ~ 43571014 (+)
G23605 NA other upstream 1417601 43405893 ~ 43410410 (+)
G23411 NA other upstream 2124966 42702541 ~ 42703045 (+)
trpc6b trpc6,LOC103377966 other upstream 2960647 41853614 ~ 41867364 (+)
G23999 NA other downstream 476363 45343458 ~ 45349337 (+)
LOC120546960 dhrs13 other downstream 1248292 46115387 ~ 46237439 (+)
ppp1r13l ppp1r13l other downstream 2135158 47002253 ~ 47054746 (+)
G24405 psmd8,LOC102787089 other downstream 2276697 47143792 ~ 47146369 (+)
spred3 spred3 other downstream 2414723 47281818 ~ 47289858 (+)

Expression


Co-expression Network