LOC120553091


Basic Information

Item Value
gene id LOC120553091
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 42731419 ~ 42732383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638096.1
ttcttcttctgctgcttcCTGGCATTCGTTCTTCTTCTGCTGTTTTCTGGCATTCGTTTTGCCTTGAATAAAGCCTGAAAAACGGGAGCTCTAGCAGAAGTTAATTATAATGTATCTAGAAGCTGAAATATATCGTCAAGGTTGAACTATATTGAACATTACACGACATCTGTTGTAAACAAAGTTATCTCGTGGATTTCAGTGGATTAAAAACCAGTCTGGCTATCGACAATAGCAGTGGATGTTACCCCACAGACTGGTTTTTTTGAGGCTTCTTCTGGTCCTGGATCCCTGATGTTCTTTCCATTGAAGCTGGATTCTTCTCTGTCTGCCCTGGTGCCTGGTTCCTTGGTCCACTGCCTCATCTAACAACGCTGCAACGGTCCCATTGGGTGGTTTGATATGGACGCTAAGTATTGAGGGGGTGGTTGGACAGTTAAAATATTTGAGTGCACTCAAGGGCAactatttttcttttgaaagattttccttttgtttttttgtttcatgaGATCTCAAAAATTGTGGCTGATTTGTGAATATTAATGCTGTGAGAACTGAACTAAATATTGAATTTTGAAtaagaaaataaggaaaataattttaataagAACCTCATTCAAACTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638096.1 True 629 lncRNA 0.38 3 42731419 42732383

Neighbor

gene id symbol gene type direction distance location
fat3a fat3 coding downstream 109459 42393288 ~ 42621960 (-)
ttc36 ttc36 coding downstream 461997 42267074 ~ 42269422 (-)
LOC120547924 NA coding downstream 735072 41886984 ~ 41996347 (-)
cep126 NA coding downstream 878869 41833504 ~ 41852550 (-)
yap1 yap1 coding downstream 903470 41795353 ~ 41827949 (-)
gal3st2 LOC104950586 coding upstream 7253 42739636 ~ 42768566 (-)
LOC120549271 NA coding upstream 172430 42904813 ~ 42910737 (-)
efhd1 efhd1,LOC100691052,LOC101463816,LOC102780618,LOC103377704 coding upstream 260408 42992791 ~ 43063245 (-)
LOC120553532 NA coding upstream 648743 43381126 ~ 43383213 (-)
LOC120570616 LOC104946633,LOC103355253,LOC102792009,LOC102302768,LOC102198488 coding upstream 834197 43566580 ~ 43578411 (-)
G23416 NA non-coding downstream 16273 42714932 ~ 42715146 (-)
G23396 NA non-coding downstream 57825 42673188 ~ 42673594 (-)
G23395 NA non-coding downstream 88139 42643070 ~ 42643280 (-)
G23354 NA non-coding downstream 393553 42337662 ~ 42337866 (-)
G23344 NA non-coding downstream 418205 42312555 ~ 42313214 (-)
LOC120570523 NA non-coding upstream 89230 42821613 ~ 42832671 (-)
LOC120572866 NA non-coding upstream 106070 42838453 ~ 42840995 (-)
G23470 NA non-coding upstream 194769 42927152 ~ 42927449 (-)
G23473 NA non-coding upstream 201950 42934333 ~ 42934806 (-)
G23486 NA non-coding upstream 247279 42979662 ~ 42979887 (-)
cntn5 NA other downstream 564382 42029673 ~ 42167037 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 2261243 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 2698263 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 3995596 38727508 ~ 38735823 (-)
robo2 NA other downstream 4082820 38353024 ~ 38648599 (-)
LOC120574039 nlk,nlk2 other upstream 504299 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 968588 43700971 ~ 43716741 (-)
smco4 NA other upstream 1037683 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 2084245 44816628 ~ 44824993 (-)
bet1l bet1l other upstream 4402471 47134854 ~ 47142596 (-)

Expression


Co-expression Network