G130557


Basic Information

Item Value
gene id G130557
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 1276451 ~ 1276721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU175853
tacactgaaaaaaagaacatgttGGATTCACTTAATTCAATAGTGGACATTGGTTGCACACAAATGTTTTGCTTTGTCAGCAACTTAAACAATTGAGTTAAATTAACACAAGTTATTCATGTTAAATAAAcctgtgtattttgtgttgataCAGTGcgattaaaacatgttttgataaagtaattggaacattttaatCCTTCACAATTGTATCACTTTATTTCAACACTATTCAATAAATTTTACTTTAATACCATTTGGTCACATAAAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko00350 Tyrosine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU175853 True 271 lncRNA 0.27 1 1276451 1276721

Neighbor

gene id symbol gene type direction distance location
nxph1 nxph1,LOC104927365,LOC103358892,LOC106588718,LOC108244452,LOC106570312 coding upstream 15795 1185673 ~ 1260656 (+)
thsd7aa thsd7a,LOC108244467 coding upstream 114387 914845 ~ 1162064 (+)
LOC120571743 LOC104949111,LOC103357128 coding upstream 468688 779513 ~ 807763 (+)
txnipa txnip,LOC104933059 coding upstream 599123 673133 ~ 677328 (+)
chtopa chtop coding upstream 618924 647671 ~ 657527 (+)
phf14 phf14 coding downstream 415953 1692674 ~ 1823924 (+)
rpa3 rpa3 coding downstream 655990 1932711 ~ 1945376 (+)
col28a1a LOC103357135,LOC106588681 coding downstream 694339 1971060 ~ 2024505 (+)
sdhaf3 sdhaf3 coding downstream 801512 2078233 ~ 2093598 (+)
tac1 tac1 coding downstream 933375 2210096 ~ 2216292 (+)
G130552 NA non-coding upstream 4932 1271234 ~ 1271519 (+)
G130510 NA non-coding upstream 335766 940477 ~ 940685 (+)
LOC120571710 NA non-coding upstream 498454 775068 ~ 777997 (+)
G130479 NA non-coding upstream 577484 692788 ~ 698967 (+)
G130478 NA non-coding upstream 592962 682847 ~ 683489 (+)
G130562 NA non-coding downstream 8704 1285425 ~ 1288321 (+)
G130565 NA non-coding downstream 53668 1330389 ~ 1331090 (+)
G130569 NA non-coding downstream 70556 1347277 ~ 1347647 (+)
G130571 NA non-coding downstream 75164 1351885 ~ 1352217 (+)
G130585 NA non-coding downstream 161769 1438490 ~ 1438707 (+)
G130504 NA other upstream 405101 870810 ~ 871350 (+)
si:ch211-152p11.4 LOC106593811 other upstream 894810 353305 ~ 381641 (+)
G130343 LOC107386814 other upstream 1006527 269176 ~ 269924 (+)
sf3a3 sf3a3 other downstream 1772304 3049025 ~ 3076057 (+)
LOC120571299 rarb,LOC103362260 other downstream 2316824 3593545 ~ 3826146 (+)
G131253 NA other downstream 3223623 4500344 ~ 4500961 (+)
G131255 NA other downstream 3224347 4501068 ~ 4501732 (+)
G131277 NA other downstream 3312674 4589395 ~ 4599956 (+)

Expression


Co-expression Network