rpa3 (rpa3)


Basic Information

Item Value
gene id rpa3
gene name rpa3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 1932711 ~ 1945376 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039820989.1
AACCCCGTGGGTTTTCAATGGAAATGTTGATACCCCGCCCGTGTAGGCTTGCGTGTGATACAAAACTATCGAACTAAACATTTCCCGCGCGATATTGCTTTTTGTGGAGTTTAACAACGCCATAACAGCAAAAAACCGTAAAATGGCAGATATGGTGGGTATACTGGATGTCCCGAAATCCCGAGTAACCTGCGATATGTTGTCGCAGCACATAGGCAAACCGGTCTGCTTTGTTGGGCGTGTTGAAAAGGTTCACCCAACAGGAAAAACGTTCACCGTCTCGGATGGAGAAGGGAAGATCGCAACGgttgaacttgtgtgtgttCTTGACGAGGAGCTGAGCGGTGTTGTGGAGGTCATCGGCATGGTGACCAACAAAGGAGCCATAATGGCCAGCACGTACAACATGCTGCGAGAGGACAAGGGCATTCCTTTTGatttaGAGCTGTATGCTGAAGCCCTGAAAGTCATCAATGAGTTCCCCCAGTACTACCCTTTTGAAGTGGCTGCAAGTGGATGAGGCTCCCCAGGTCAACATGTGGCCACTAAAGATTCTCTTCGTTCACTGGCCATTGTTTGTTTCATGTGGCCCTGTTTTGTTGAGTAAAAATTTGATTTGTACAAAAGAAAATCTGTAATATTAAGTCATTTTTGttggtaaaataaaatgtgtaaagaCCAAA

Function

symbol description
rpa3 Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA repair and DNA replication. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of DNA replication factor A complex. Predicted to be active in site of double-strand break. Is expressed in several structures, including eye; immature eye; neural tube; pectoral fin musculature; and vasculature. Orthologous to human RPA3 (replication protein A3).

NR:

description
PREDICTED: replication protein A 14 kDa subunit

GO: NA

KEGG:

id description
K10740 RPA3; replication factor A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039820989.1 True 683 mRNA 0.45 4 1932711 1945376

Neighbor

gene id symbol gene type direction distance location
phf14 phf14 coding upstream 108787 1692674 ~ 1823924 (+)
nxph1 nxph1,LOC104927365,LOC103358892,LOC106588718,LOC108244452,LOC106570312 coding upstream 672055 1185673 ~ 1260656 (+)
thsd7aa thsd7a,LOC108244467 coding upstream 770647 914845 ~ 1162064 (+)
LOC120571743 LOC104949111,LOC103357128 coding upstream 1124948 779513 ~ 807763 (+)
txnipa txnip,LOC104933059 coding upstream 1255383 673133 ~ 677328 (+)
col28a1a LOC103357135,LOC106588681 coding downstream 25684 1971060 ~ 2024505 (+)
sdhaf3 sdhaf3 coding downstream 132857 2078233 ~ 2093598 (+)
tac1 tac1 coding downstream 264720 2210096 ~ 2216292 (+)
LOC120570829 LOC106674472,LOC106537358 coding downstream 336738 2282114 ~ 2299143 (+)
si:dkey-222b8.4 kiaa0895 coding downstream 385219 2330595 ~ 2356186 (+)
G130656 glcci1,LOC102314340 non-coding upstream 67124 1863431 ~ 1865587 (+)
G130655 NA non-coding upstream 71568 1857030 ~ 1861143 (+)
G130653 NA non-coding upstream 84224 1848281 ~ 1848487 (+)
G130650 NA non-coding upstream 107467 1824996 ~ 1825244 (+)
G130646 NA non-coding upstream 241418 1690965 ~ 1691293 (+)
G130714 NA non-coding downstream 116634 2062010 ~ 2062234 (+)
G130717 NA non-coding downstream 130621 2075997 ~ 2076346 (+)
G130722 NA non-coding downstream 152708 2098084 ~ 2098284 (+)
G130735 NA non-coding downstream 211113 2156489 ~ 2156722 (+)
G130740 NA non-coding downstream 218840 2164216 ~ 2164482 (+)
G130504 NA other upstream 1061361 870810 ~ 871350 (+)
si:ch211-152p11.4 LOC106593811 other upstream 1551070 353305 ~ 381641 (+)
G130343 LOC107386814 other upstream 1662787 269176 ~ 269924 (+)
sf3a3 sf3a3 other downstream 1103649 3049025 ~ 3076057 (+)
LOC120571299 rarb,LOC103362260 other downstream 1648169 3593545 ~ 3826146 (+)
G131253 NA other downstream 2554968 4500344 ~ 4500961 (+)
G131255 NA other downstream 2555692 4501068 ~ 4501732 (+)
G131277 NA other downstream 2644019 4589395 ~ 4599956 (+)

Expression


Co-expression Network