G130614


Basic Information

Item Value
gene id G130614
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 1586481 ~ 1587358 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU175912
ctggcgaggcgagcaacatgacatcatgtttttcagacaacagcagttcCAGTCCGGTGTTggagtcctctccagtgaaatacagacacactttacaacgtttagctgtaaacattttaaccatgtttactccagctgctagctaacggtaggctaacgttacctgctgctaagtgtattGTTGACTGAACTCctatgtttcagttccctctaacgtccgttttcaaGACATCAGAGAGACgcacaggcatttaagtggcacctaaataaggcatcgaaatccgcgttgctattcagtccggtagataacggtcgttaaggcaccgctgccgtattagcaccgggtcttggaccccattcaaaacggcaATTTTCGTCAataagcgactagtttgcaggtatgtactactctttggccggctcgcaagcaagtgcaaacaagtggcagcgtgcatgttgttttgtttccggtctagctagatccggtgtggtgttgtagtttttctaacgttactagttgttgcaaaagcatgtgaaaaaactacaaagtttgctaggccaaaaagaatgttaatctcgcaataaaaaaatttacgccgttaaaatgggtttgtgtTAACACCGTTAATAACGTGttaaactgacagcactagtaatGACACATCATGTGACACTTAGATTGCACACAGGTGGACATCATTTCACTAATTATGTGACTTCTGAAGGTAATTGGTTGCACCAGAGCTTTTTATGGGCTTCATAACAAAGGGGGTGAATACATACGCACATgccaattttcagttttttatttctaaaaaatagttttatgtatatatttttctcatttcacttcaCAAACTTAGACTATTGTGTTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175912 True 878 lncRNA 0.41 1 1586481 1587358

Neighbor

gene id symbol gene type direction distance location
nxph1 nxph1,LOC104927365,LOC103358892,LOC106588718,LOC108244452,LOC106570312 coding upstream 325825 1185673 ~ 1260656 (+)
thsd7aa thsd7a,LOC108244467 coding upstream 424417 914845 ~ 1162064 (+)
LOC120571743 LOC104949111,LOC103357128 coding upstream 778718 779513 ~ 807763 (+)
txnipa txnip,LOC104933059 coding upstream 909153 673133 ~ 677328 (+)
chtopa chtop coding upstream 928954 647671 ~ 657527 (+)
phf14 phf14 coding downstream 105316 1692674 ~ 1823924 (+)
rpa3 rpa3 coding downstream 345353 1932711 ~ 1945376 (+)
col28a1a LOC103357135,LOC106588681 coding downstream 383702 1971060 ~ 2024505 (+)
sdhaf3 sdhaf3 coding downstream 490875 2078233 ~ 2093598 (+)
tac1 tac1 coding downstream 622738 2210096 ~ 2216292 (+)
G130613 NA non-coding upstream 1875 1584094 ~ 1584606 (+)
G130585 NA non-coding upstream 147774 1438490 ~ 1438707 (+)
G130571 NA non-coding upstream 234264 1351885 ~ 1352217 (+)
G130569 NA non-coding upstream 238834 1347277 ~ 1347647 (+)
G130565 NA non-coding upstream 255391 1330389 ~ 1331090 (+)
G130616 NA non-coding downstream 14539 1601897 ~ 1602162 (+)
G130618 NA non-coding downstream 15499 1602857 ~ 1603511 (+)
G130620 NA non-coding downstream 16298 1603656 ~ 1603867 (+)
G130623 NA non-coding downstream 21099 1608457 ~ 1608694 (+)
G130624 NA non-coding downstream 26341 1613699 ~ 1614195 (+)
G130504 NA other upstream 715131 870810 ~ 871350 (+)
si:ch211-152p11.4 LOC106593811 other upstream 1204840 353305 ~ 381641 (+)
G130343 LOC107386814 other upstream 1316557 269176 ~ 269924 (+)
sf3a3 sf3a3 other downstream 1461667 3049025 ~ 3076057 (+)
LOC120571299 rarb,LOC103362260 other downstream 2006187 3593545 ~ 3826146 (+)
G131253 NA other downstream 2912986 4500344 ~ 4500961 (+)
G131255 NA other downstream 2913710 4501068 ~ 4501732 (+)
G131277 NA other downstream 3002037 4589395 ~ 4599956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G401176 NA unknown NC_048569.1 CM023223.2 41194317 ~ 41195659 (-)