G143146


Basic Information

Item Value
gene id G143146
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 13626445 ~ 13690823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU193089
GGGGGGGGGGACTTGATGCACattgtaaagaaaataaaatctgtttcaCAATCAAGAACACACAGACAACCCATCGAAAAAGAAGACAATGCTTGGTCcacaacagcaggacagacttaaagtaataatgaataaataacctATTTCCTGTCACAATGTTCATCTAAATTTTTGGGAGACGGTAGAGTTCAAATGAtctatgaaataaataaaaaattattgatttagttttttagtACTTTATTATACAGCTGATGTGctttttttgaaatgtgtgaatttcctttttttacacaaatttATTGCTTggaaaagaagtgataaaacgTATTTAcgtaaatgttatttttttttaaagctgtagAACTGTTCTGACATatgtgctattttgcagagagtatctttgcttttttttttttcattttggtttggtttccaTTTTCGTCCCTCATTTTGTTGCACTTGGTGCACAGAACAGAATTCACACTACCAAAAGGAAAGTTTGTTCAAGAGTTATTTTTGGGCTGGATTTTTGTTATGGTTTTCGTCCATGATCACATACATGGTAACTTAATTACTCCCATGAGATAAACTGGGGCTTTGTGGAATCAACAGGGATGAGCAAAGTATGAAGTTGCTGCTACCGATTATCTTAGTTCTTCCATGTTAGAAGGATGATAAGAGATAACCTGATGAATTGgataaaatatatgaatatatagatatatggtACAGACTGTCAAatatatgtgaaatatatattaAAGCATACATATAACATTCTAAATATATTGATAAAGTACATAATTTATGAGTAAAAAAGTATTTGAAATATGGATGGTCTATGAAAGCTTCCAGATTGAGAGTTGTGTGCTATGGGGGAAATGAAATGAGATTTTTCACTGGAATGCACATCAGTAGGACAAAATTGTATTCTGATTCAGTGCATCTTTTCTTGTGcaataaatgtgtatttttagaTAGGGTTTTATGTGGATATGTCATTCACTCATGACATTGTTGTTCCCCCCGCAAGTGAGGTGTGGGAATGTCGGGTGCCAGTCAAAGTGTCACTGGTGCATTTTTTTTCAAGCTCTCATACAGTGTGTAATTAGAAGCAGAGGGGTCACACAGCCGCAATCACCGCTCCACACAATAGGGCAAGGTACAAAGACGTCACTTTCTTGTGGTTCTTTAAAGCATTCAATGGTaatgacttttttaattttgCATTTAGAGTGCCTTATATTTATGCCTGTTTTTATAATGTTTCATTTAACATATTAATGTATCCTGAGTAATCTAGGCATTTAGTATAGATGTAACTGTATAGTTTATTTACCATAAGTATTCATTTGTCACATGATGAGATTATATATGCAAATAAGAACATTTCAAAGctcatatttttcattttcagtggCCTTATTGTGGctgagtgaataaaaaaaattaaaaaaaagttaatatatCACTGACCTCTACAGAATACACAATAGTTAcaaaacatatatttaaaatgttcagacATGGAGACCGGGATGAGATTGCAGAATACTCAAAACTAAACAGGATGAAGGCCCAACATAATGGTAATTCAATTCAAACTAAAAATGGATTTGGTCAAAAAGAATGCACAGGTCGTCACCACAAGGTTTCTTTTCCATGCCTCTGAATTCCAGACTTTATATGTGTCACTACAGAGAAGAGATATAGAGAAACACAATCTGCAACAACATTTCAGTTCTGCTATCCTGACAGTGTGTTATGTTCCTTTTTTATGTATgacattacagtaaaatactgGAGTTTAGTTTGGTTATGTTTCAGTCTATGTGTTGAGCAGCATCTTTAACTTCTCCGTACCCTCTTTGATGGCTTTGTGGATGTGCATTCCAGGTGCTTTCTTTCCCTTGTTAACTCAAGCAgctatgtgttttatttttgtcaacTGCTTAACTGATTACTTTTGTCTTCATTTTGAGATATAAAAGTGCTATCATTTAACTTAAAGgtggctaacgttacattatgTTCGCGTCTCAGATGTTTATTTTCTCATCTcagtttttccctttttttattgatttttcataTGCAGGGTGAAACATTGCAGAATGGCCGAAGCTGGCCTGTTAGgaagatttgcactttctctATCTTTGTACTATGCACTGCCCTATTGATTCTAAACCCAATAATATATTACTTGAAcccatctataaaaaaaaaaaaaaaatctccttaAACGTTcactttgtgtgtatgtaaataacacaaaaaaaggtAACAACTcttgaaaaagacaaaaaaaaaaaaacgtttgtgGCGAAAAAGAGCATCCATTCTGATGCCATGGTTACTCCAGCAGATGACTTCAGAAAAATCTGTCCCCCAACCATCTGTTCTTGTGGCTTTGCCATTCAAGCTTGGAGTGTCATTAACAGAAATAAACGTTGTGTTCTctgctctctctatctatctctcgtCTGGATGCATAGATTGAAAATTAAATAatgaaattgtaaaaaaaataaataaaaaaaaatggcttgttaaaaacatcatacaattaCCTCCGATTAGTTGTAAGCGTAAACTGTTTCTTTTTCTGAATGAAAGGAgtgctttttattttcttacttAGGTTACATTGGTGGCGAAAGAAATCTGTATGGAAATCAGTTCTTTGCTGACACAAGTTCCATTTGTTATAAATTAATTCTATTAAAAAATGTCAGTGTTATGCATCGGCGTTTCACTTGTTTCCCTCCACCTCACTTTGACTTGAAAAGACTGATGGAGCTATTTTACCCCCTACTGGTCTGGGTCCAATATATTATCCACAGTTCTTTCGTGTATGGGGAAATTGAGCCTCACCACATTTAAATAGATTTCCATTGCTCTGGTTTTTCTGTCACTGATGACAGCCACATTGAATCATCAGGGGAACCTTTGACAGATGAAGTGCAAGGTTTTTAAAGCTGCCTTGTTTTTACCACAGATTTTGTTCACCATACCGACAAAGTGGTGTAGTGTTGTAAATTGGAATTATAACCACATTGCATTACATTCAATGTCATTGCACAACTGAATACTTGTTTCTTTTGCCGTTTGTTCCTGCTTCTCATCTATTATGTACGTATTTGTAAAGTTGATAACATCAAAATGACACCAGTATAACCGGCAACCTCAAGTTAGGCCAAAGGGCCAATCTAAAATCAGTTTCACTGTTAATTGACAATTTTACATTATGACTAGACATACATTGGTTGATACATACTGGTAGAAGATCCATCTTAAGTTAAAGCCAAAACTATACAACCAATATAAAGCGATAAATAttgatatataaatatgtacagtacatactgtatatgccaTGGgcaattttagaccctttttagggggggcTCAAGCCTTTAATTTCATTTCAGCCCCTCTAAAaattacaatataaaaaaatattttttatttttatttaaattaattttagtgcttcaagttagaCTTGGCGaccttgtctgttagtgacaaagaacaaacaattacaggttcaaagggcttgaaacaggtttaatatcatgTGCCGCTGTTGCCGATGCTacgcacctgtaacccagtcaaggaaagggttaacagaaacatagttttggccaatcggaggtggttgtgccagactcccgcctttggctgagtctatctaatctgtcagagggagagcaggagtgcggttgtgaagtttaacgttggtattccccagagaagaagttggtcatttcatggtgcagattagaacccaaattgaaacgtaagcaactaaaattgctgaatgttagaacattgtgtccaattggtcgttattactgtgaTACTAAAGCCACCCTAAAGGTTTGTTCCTAATATTGCCCCTGGTATATgcatatctttaaataaatataaatacatacaaattcagAAATCGAAAATGCCAGTACCAACTCCACAGATTTATTGATATATACTAAAAACAGTCTTTTACTTTGCTTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193089 True 4032 lncRNA 0.35 2 13626445 13690823

Neighbor

gene id symbol gene type direction distance location
sec24d sec24d,LOC102781699 coding downstream 258819 13348871 ~ 13367626 (-)
gba3 LOC104968198,LOC102780160,LOC101481844,LOC102214071 coding downstream 469038 13152739 ~ 13157407 (-)
ostc ostc coding downstream 1028979 12595567 ~ 12597466 (-)
saxo2 NA coding downstream 1205411 12418194 ~ 12421034 (-)
trnai-aau_26 NA coding downstream 1215329 12411043 ~ 12411116 (-)
LOC120573638 NA coding upstream 456675 14147498 ~ 14198057 (-)
LOC120573318 LOC100691113,LOC101468404,LOC102197824 coding upstream 1224874 14915697 ~ 15044963 (-)
LOC120572262 dmrta1 coding upstream 1355034 15045857 ~ 15047687 (-)
LOC120572259 LOC104923984,LOC101469849,LOC100690576,LOC103363884 coding upstream 1440638 15131461 ~ 15133886 (-)
LOC120572732 NA coding upstream 1502565 15193388 ~ 15203101 (-)
G143083 NA non-coding downstream 175725 13450297 ~ 13450720 (-)
G143050 NA non-coding downstream 331143 13293928 ~ 13295302 (-)
G143029 adgra3 non-coding downstream 433651 13190530 ~ 13192794 (-)
G143021 NA non-coding downstream 473939 13152037 ~ 13152506 (-)
G143010 NA non-coding downstream 589035 13023741 ~ 13037410 (-)
G143156 tyrp1,LOC103146366 non-coding upstream 426004 14116827 ~ 14119200 (-)
G143202 NA non-coding upstream 922861 14613684 ~ 14616561 (-)
G143218 NA non-coding upstream 990328 14681151 ~ 14688804 (-)
LOC120573482 NA non-coding upstream 1379688 15070511 ~ 15074192 (-)
G143281 NA non-coding upstream 1388482 15079305 ~ 15082030 (-)
rpl34 rpl34,LOC107566275 other downstream 1023772 12598753 ~ 12602673 (-)
G142916 NA other downstream 1211290 12413754 ~ 12415155 (-)
LOC120573137 ppp3ca,LOC103369319 other downstream 1563019 11994914 ~ 12063426 (-)
LOC120573414 LOC104960590,LOC106514884,LOC103390236,LOC107084127,LOC106908847,LOC101464045,LOC100704366,LOC102310755,LOC102193047,LOC102788271,LOC103369314,LOC103129513 other downstream 1690672 11910451 ~ 11935773 (-)
prox3 LOC104947722,LOC103363229 other downstream 2159426 11455015 ~ 11467019 (-)
LOC120572742 rbpms,LOC107086924,LOC107377421 other upstream 1396042 15086865 ~ 15121956 (-)
phf23b phf23 other upstream 2006276 15697099 ~ 15702094 (-)
acap1 acap1 other upstream 2328834 16019657 ~ 16043319 (-)
LOC120572710 nwd2 other upstream 2707110 16397933 ~ 16454928 (-)
LOC120572513 NA other upstream 3539776 17230599 ~ 17249632 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1744793 NA non-coding NC_048585.1 CM023239.2 47960583 ~ 47961550 (+)