trnar-ucu_15


Basic Information

Item Value
gene id trnar-ucu_15
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7837221 ~ 7837294 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_685
GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAGTCCCGGCAGAGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_685 True 74 tRNA 0.59 1 7837221 7837294

Neighbor

gene id symbol gene type direction distance location
kirrel1a kirrel,LOC102307446,LOC102202990,LOC101467841,LOC102781300 coding downstream 2193 7797279 ~ 7835028 (-)
ndufs2 ndufs2 coding downstream 41428 7787901 ~ 7795793 (-)
nectin4a NA coding downstream 56482 7757759 ~ 7780739 (-)
otub1b otub1,LOC102780151 coding downstream 80367 7750308 ~ 7756854 (-)
cskmt mettl12 coding downstream 87375 7747779 ~ 7749846 (-)
LOC120573599 NA coding upstream 24426 7861720 ~ 7871073 (-)
dock11 dock11 coding upstream 37357 7874651 ~ 7961707 (-)
haus4 haus4 coding upstream 126682 7963976 ~ 7968040 (-)
tifa NA coding upstream 162203 7999497 ~ 8000769 (-)
LOC120572390 NA coding upstream 227929 8065223 ~ 8067060 (-)
G141781 NA non-coding downstream 278047 7558812 ~ 7559174 (-)
G141778 NA non-coding downstream 315428 7521213 ~ 7521793 (-)
G141774 NA non-coding downstream 318464 7518509 ~ 7518757 (-)
G141773 NA non-coding downstream 318754 7518265 ~ 7518467 (-)
G141741 NA non-coding downstream 374748 7395159 ~ 7462473 (-)
G141912 NA non-coding upstream 6811 7844105 ~ 7846084 (-)
G141920 LOC102310269,LOC102201257,LOC102782862 non-coding upstream 140580 7977874 ~ 7978789 (-)
G141932 LOC104946620,LOC103361161 non-coding upstream 168534 8005828 ~ 8009859 (-)
G141974 NA non-coding upstream 243570 8080864 ~ 8081655 (-)
LOC120572408 NA non-coding upstream 384545 8221839 ~ 8222181 (-)
fcer1g NA other downstream 49554 7781911 ~ 7787667 (-)
LOC120572295 rasgrp2,LOC104942268 other downstream 133603 7648972 ~ 7703618 (-)
tbc1d14 tbc1d14 other downstream 1420764 6375972 ~ 6416457 (-)
LOC120572256 NA other downstream 1466121 6353464 ~ 6371100 (-)
sox19b LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535 other downstream 1521404 6308898 ~ 6315817 (-)
LOC120573451 NA other upstream 3627 7840921 ~ 7937490 (-)
G141913 NA other upstream 97936 7935230 ~ 7987441 (-)
LOC120572400 NA other upstream 270353 8107647 ~ 8112684 (-)
LOC120573543 NA other upstream 495071 8332365 ~ 8335374 (-)
G142077 NA other upstream 627788 8465082 ~ 8465612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ucu-121 NA coding NC_048592.1 CM023246.2 1642138 ~ 1642211 (-)
eurasian perch (Perca fluviatilis) trnag-ucc_35 NA non-coding NC_053133.1 CM020930.1 3168787 ~ 3168858 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ucu_12 NA coding NC_047615.1 CM018561.1 10187751 ~ 10187824 (+)
tiger barb (Puntius tetrazona) trnar-ucu_9 NA coding NC_056705.1 CM032074.1 12683158 ~ 12683231 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_12 NA coding NW_019172695.1 APWO02002293.1 630 ~ 719 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_40 NA coding NW_019172835.1 APWO02000053.1 896993 ~ 897066 (+)