trnar-ucu_12


Basic Information

Item Value
gene id trnar-ucu_12
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10187751 ~ 10187824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ucu_12
GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAGTCCCGGCAGAGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucu_12 True 74 tRNA 0.59 1 10187751 10187824

Neighbor

gene id symbol gene type direction distance location
sdhc sdhc coding upstream 1684 10173820 ~ 10186067 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding upstream 57029 10061226 ~ 10130722 (+)
mpz mpz,LOC106600490 coding upstream 134211 10042888 ~ 10053540 (+)
lig1 lig1 coding upstream 153736 10003656 ~ 10034015 (+)
LOC113533165 LOC108280405,LOC100705068 coding upstream 198707 9981186 ~ 9989044 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding downstream 8284 10196108 ~ 10288224 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding downstream 104006 10291830 ~ 10347388 (+)
ccl20a.4 NA coding downstream 345160 10532984 ~ 10534451 (+)
vwa5b2 LOC108280745 coding downstream 467585 10655409 ~ 10704492 (+)
mul1a LOC108280869 coding downstream 523884 10711708 ~ 10719149 (+)
G317761 NA non-coding upstream 625 10186306 ~ 10187126 (+)
G317754 NA non-coding upstream 30221 10157277 ~ 10157530 (+)
G317703 NA non-coding upstream 80830 10105766 ~ 10106921 (+)
G317633 NA non-coding upstream 247514 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 307995 9878915 ~ 9879756 (+)
G317939 NA non-coding downstream 316339 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 329764 10517588 ~ 10520208 (+)
G317946 NA non-coding downstream 336662 10524486 ~ 10524774 (+)
G317963 NA non-coding downstream 386990 10574814 ~ 10575152 (+)
G317964 NA non-coding downstream 387489 10575313 ~ 10575547 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 209835 9958993 ~ 9977916 (+)
G317390 NA other upstream 772587 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1374341 8811595 ~ 8813410 (+)
G316745 NA other upstream 1918553 8268709 ~ 8269198 (+)
G316744 NA other upstream 1923690 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 348607 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 375997 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 542522 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1212060 11399884 ~ 11464769 (+)
G318439 NA other downstream 1279475 11467299 ~ 11469499 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ucu-121 NA coding NC_048592.1 CM023246.2 1642138 ~ 1642211 (-)
eurasian perch (Perca fluviatilis) trnar-ucu_15 NA coding NC_053125.1 CM020922.1 7837221 ~ 7837294 (-)
eurasian perch (Perca fluviatilis) trnag-ucc_35 NA non-coding NC_053133.1 CM020930.1 3168787 ~ 3168858 (+)
tiger barb (Puntius tetrazona) trnar-acg_12 NA coding NC_056702.1 CM032071.1 26262920 ~ 26262993 (-)
tiger barb (Puntius tetrazona) trnar-ucu_9 NA coding NC_056705.1 CM032074.1 12683158 ~ 12683231 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_40 NA coding NW_019172835.1 APWO02000053.1 896993 ~ 897066 (+)