eif4e2 (eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458)


Basic Information

Item Value
gene id eif4e2
gene name eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10563821 ~ 10568907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376560
CCAGGATGCTCGTGCTCGCAAAGCGCTCGTGCGCGCGCCGCTGATGCTGCGAATTTGACGGGTCGGCCGCCGGGACAGCGAGCGGAGGGAGACTGGAACTTAGGAAATAATGAACAACAAATTTGACGCTCTGAAAGATGACGACAGTGGAGATCACGACCAGGATAACGGCTCACCGAAAGATGGTGAGAAGGAAAGGAATGAGGATGAGGAAAAGGACCAAAACACTTCCACCTGTTTAAGGAGGGAATCAAGCCCATGTGGGAGGATGATGCTAATAAGAGTGGAGGGAAGTGGATAATTCGGTTGCGGAAGGGTCTGGCCTCACGCTGCTGGGAGAATCTGATCCTGGCCATGTTGGGTGAGCAGTTCATGGTTGGTGAGGAGATCTGTGGCGCTGTTGTCTCTGTCCGCTTCCAGgAGGATATCATATCTATCTGGAACAAAACAGCAAGTGATCAGGCCACTACTGCTCGCATTAGGGACACGCTTCGCAGAGTCCTCAACCTGCCACCAAACACCATCATggagtacaaaacacacactgacagcatCAAGGCTTGGGAGGATTTCCATGGACTGGTGAACGCTAGTGGTGGTCGCTAGGTCTTTCTCATGGGTGAACAATGTCAGGGGTTTAGTTACCTTCAGTGTGGATGAAGAGGACTTTCCTAGGGCATACAACTCACTTATTTatgaattaacattttttttaaatagaaaacaaaaagggATATTGACTGCTGGAATGCCCATTTTCCTGGTCAAAATATCATAACATATTCAGCTAAAATGCCCCTGAGAATGAAGGAGGAGTTAAAAGACCAGTAACAAATGTTTTTGAATAGTTATTAAGAAAAACTTAAGCCGGTTCAGAAACAAGCCTCAGAAATTGTCGCTACTGTGGTTCTGATGAAGGCTGATTAACAAAACCAATCAAATGAAATTTGGTGCATCGTTGTACAGAAAGTTACATTGACCTCATCTGGCAAGTTATTCAGCTTCACATAACCCACCCTTCTTAGAAAGCAAGTACTTTTATTTGATATTGTCATAAACAGGGTTACATTTTACTATAGTGCAgtattttaatttcagtgttaaaaagttttgtttttgaaattgtaagaagcaaaaaatatattttcaaagtTTTTGAAGAGATATATGATGGAATCGGTtcttaatttttgttttaagcTGAGTGTGTTGAAGCTTAAAAGCCTAAAAGATATCGCACTGTGCCTGCTTCCCAGAAGCACTCAGCATTCTGTGATTTTGCCTTGGAAAGAAATTTTCGTGATTGCGCTGTCAGCTGAAAAATCCTGATTCTCCTTTACCACCAACTAGAATTGAAGAATAATAACTGATGTGGATTTGGAGATTGGGGTTAGTCATGGTTTGTCTACATCTCTTACATACTGCCTGGATTTATAAACTTGTGTGTTTGAAGTAATGTTTGGATTACAGATGACTGATAGCAATAAACATCAAATATGCAGC
>XM_026925353.2
CGCTCGCGACCGAACCAGGATGCTCGTGCTCGCAAAGCGCTCGTGCGCGCGCCGCTGATGCTGCGAATTTGACGGGTCGGCCGCCGGGACAGCGAGCGGAGGGAGACTGGAACTTAGGAAATAATGAACAACAAATTTGACGCTCTGAAAGATGACGACAGTGGAGATCACGACCAGGATAACGGCTCACCGAAAGATGGTGAGAAGGAAAGGAATGAGGATGAGGAAAAGGACCAAAACACTACCAggaggaagGCTGTGGTTCCTGGGGCAGGCGAACATCCTCTTCAATATAACTACACATTCTGGTATTCTCGGCGAACCCCAGGCAGACCAGCCAGTACACAGAGCTATGAACAGAACATCAAACAGATCGGCAGCTTTGCTTCGGTGGAGCAGTTCTGGCGGTTTTACAGTCACATGATCAGACCAGGTGATCTGACTGGCCACAGCGACTTCCACCTGTTTAAGGAGGGAATCAAGCCCATGTGGGAGGATGATGCTAATAAGAGTGGAGGGAAGTGGATAATTCGGTTGCGGAAGGGTCTGGCCTCACGCTGCTGGGAGAATCTGATCCTGGCCATGTTGGGTGAGCAGTTCATGGTTGGTGAGGAGATCTGTGGCGCTGTTGTCTCTGTCCGCTTCCAGgAGGATATCATATCTATCTGGAACAAAACAGCAAGTGATCAGGCCACTACTGCTCGCATTAGGGACACGCTTCGCAGAGTCCTCAACCTGCCACCAAACACCATCATggagtacaaaacacacactgacagcatCAAGGCTTGGGAGGATTTCCATGGACTGGTGAACGCTAGTGGTGGTCGCTAGGTCTTTCTCATGGGTGAACAATGTCAGGGGTAGGGCCAGTATagcaccttaaaaaaaatccatccatctccaTATAACACTCCAAAACTTCATCATGCCAAAAGCAAAACTCCACCATACTTGAACTTATCAGTCTAAAGCTTAACCACTATAATGTAACACCCCACTAAATTTGATATTGACAATGTGCTATTTTTCAATCTCTAATTTAATACAGTGTTATTTCATTTCTAGGTTTAGTTACCTTCAGTGTGGATGAAGAGGACTTTCCTAGGGCATACAACTCACTTATTTatgaattaacattttttttaaatagaaaacaaaaagggATATTGACTGCTGGAATGCCCATTTTCCTGGTCAAAATATCATAACATATTCAGCTAAAATGCCCCTGAGAATGAAGGAGGAGTTAAAAGACCAGTAACAAATGTTTTTGAATAGTTATTAAGAAAAACTTAAGCCGGTTCAGAAACAAGCCTCAGAAATTGTCGCTACTGTGGTTCTGATGAAGGCTGATTAACAAAACCAATCAAATGAAATTTGGTGCATCGTTGTACAGAAAGTTACATTGACCTCATCTGGCAAGTTATTCAGCTTCACATAACCCACCCTTCTTAGAAAGCAAGTACTTTTATTTGATATTGTCATAAACAGGGTTACATTTTACTATAGTGCAgtattttaatttcagtgttaaaaagttttgtttttgaaattgtaagaagcaaaaaatatattttcaaagtTTTTGAAGAGATATATGATGGAATCGGTtcttaatttttgttttaagcTGAGTGTGTTGAAGCTTAAAAGCCTAAAAGATATCGCACTGTGCCTGCTTCCCAGAAGCACTCAGCATTCTGTGATTTTGCCTTGGAAAGAAATTTTCGTGATTGCGCTGTCAGCTGAAAAATCCTGATTCTCCTTTACCACCAACTAGAATTGAAGAATAATAACTGATGTGGATTTGGAGATTGGGGTTAGTCATGGTTTGTCTACATCTCTTACATACTGCCTGGATTTATAAACTTGTGTGTTTGAAGTAATGTTTGGATTACAGATGACTGATAGCAATAAACATCAAATATGCAGCTGCTGCTAACA
>XM_026925354.2
CGCTCGCGACCGAACCAGGATGCTCGTGCTCGCAAAGCGCTCGTGCGCGCGCCGCTGATGCTGCGAATTTGACGGGTCGGCCGCCGGGACAGCGAGCGGAGGGAGACTGGAACTTAGGAAATAATGAACAACAAATTTGACGCTCTGAAAGATGACGACAGTGGAGATCACGACCAGGATAACGGCTCACCGAAAGATGGTGAGAAGGAAAGGAATGAGGATGAGGAAAAGGACCAAAACACTACCAggaggaagGCTGTGGTTCCTGGGGCAGGCGAACATCCTCTTCAATATAACTACACATTCTGGTATTCTCGGCGAACCCCAGGCAGACCAGCCAGTACACAGAGCTATGAACAGAACATCAAACAGATCGGCAGCTTTGCTTCGGTGGAGCAGTTCTGGCGGTTTTACAGTCACATGATCAGACCAGGTGATCTGACTGGCCACAGCGACTTCCACCTGTTTAAGGAGGGAATCAAGCCCATGTGGGAGGATGATGCTAATAAGAGTGGAGGGAAGTGGATAATTCGGTTGCGGAAGGGTCTGGCCTCACGCTGCTGGGAGAATCTGATCCTGGCCATGTTGGGTGAGCAGTTCATGGTTGGTGAGGAGATCTGTGGCGCTGTTGTCTCTGTCCGCTTCCAGgAGGATATCATATCTATCTGGAACAAAACAGCAAGTGATCAGGCCACTACTGCTCGCATTAGGGACACGCTTCGCAGAGTCCTCAACCTGCCACCAAACACCATCATggagtacaaaacacacactgacagcatCAAGGCTTGGGAGGATTTCCATGGACTGGTGAACGCTAGTGGTGGTCGCTAGGTCTTTCTCATGGGTGAACAATGTCAGGGGTTTAGTTACCTTCAGTGTGGATGAAGAGGACTTTCCTAGGGCATACAACTCACTTATTTatgaattaacattttttttaaatagaaaacaaaaagggATATTGACTGCTGGAATGCCCATTTTCCTGGTCAAAATATCATAACATATTCAGCTAAAATGCCCCTGAGAATGAAGGAGGAGTTAAAAGACCAGTAACAAATGTTTTTGAATAGTTATTAAGAAAAACTTAAGCCGGTTCAGAAACAAGCCTCAGAAATTGTCGCTACTGTGGTTCTGATGAAGGCTGATTAACAAAACCAATCAAATGAAATTTGGTGCATCGTTGTACAGAAAGTTACATTGACCTCATCTGGCAAGTTATTCAGCTTCACATAACCCACCCTTCTTAGAAAGCAAGTACTTTTATTTGATATTGTCATAAACAGGGTTACATTTTACTATAGTGCAgtattttaatttcagtgttaaaaagttttgtttttgaaattgtaagaagcaaaaaatatattttcaaagtTTTTGAAGAGATATATGATGGAATCGGTtcttaatttttgttttaagcTGAGTGTGTTGAAGCTTAAAAGCCTAAAAGATATCGCACTGTGCCTGCTTCCCAGAAGCACTCAGCATTCTGTGATTTTGCCTTGGAAAGAAATTTTCGTGATTGCGCTGTCAGCTGAAAAATCCTGATTCTCCTTTACCACCAACTAGAATTGAAGAATAATAACTGATGTGGATTTGGAGATTGGGGTTAGTCATGGTTTGTCTACATCTCTTACATACTGCCTGGATTTATAAACTTGTGTGTTTGAAGTAATGTTTGGATTACAGATGACTGATAGCAATAAACATCAAATATGCAGCTGCTGCTAACA

Function

symbol description
eif4e2 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Acts upstream of or within angiogenesis. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 4F complex. Is expressed in brain; digestive system; optic cup; and somite. Orthologous to human EIF4E2 (eukaryotic translation initiation factor 4E family member 2).

NR:

description
eukaryotic translation initiation factor 4E type 2 isoform X4

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

RNA

RNA id representative length rna type GC content exon number start site end site
TU376560 False 1503 TUCP 0.42 7 10563835 10568896
XM_026925353.2 True 1947 mRNA 0.42 7 10563821 10568907
XM_026925354.2 False 1742 mRNA 0.44 8 10563821 10568907

Neighbor

gene id symbol gene type direction distance location
ccl20a.4 NA coding upstream 29370 10532984 ~ 10534451 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 216433 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 275597 10196108 ~ 10288224 (+)
trnar-ucu_12 NA coding upstream 375997 10187751 ~ 10187824 (+)
sdhc sdhc coding upstream 377754 10173820 ~ 10186067 (+)
vwa5b2 LOC108280745 coding downstream 86502 10655409 ~ 10704492 (+)
mul1a LOC108280869 coding downstream 142801 10711708 ~ 10719149 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding downstream 269848 10838755 ~ 10860296 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 293052 10861959 ~ 10878656 (+)
map6d1 LOC108280841 coding downstream 311334 10880241 ~ 10897751 (+)
G317946 NA non-coding upstream 39047 10524486 ~ 10524774 (+)
LOC117599937 NA non-coding upstream 43613 10517588 ~ 10520208 (+)
G317939 NA non-coding upstream 53628 10504163 ~ 10510193 (+)
G317761 NA non-coding upstream 376695 10186306 ~ 10187126 (+)
G317754 NA non-coding upstream 406291 10157277 ~ 10157530 (+)
G317963 NA non-coding downstream 5907 10574814 ~ 10575152 (+)
G317964 NA non-coding downstream 6406 10575313 ~ 10575547 (+)
G317967 NA non-coding downstream 13186 10582093 ~ 10582292 (+)
G318016 NA non-coding downstream 79014 10647921 ~ 10648193 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding downstream 137907 10706814 ~ 10707508 (+)
capn10 capn10 other upstream 827 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 585905 9958993 ~ 9977916 (+)
G317390 NA other upstream 1148657 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1750411 8811595 ~ 8813410 (+)
G316745 NA other upstream 2294623 8268709 ~ 8269198 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 161439 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 830977 11399884 ~ 11464769 (+)
G318439 NA other downstream 898392 11467299 ~ 11469499 (+)
G319170 NA other downstream 2196148 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2452235 13021142 ~ 13154527 (+)

Expression


Co-expression Network