G317967


Basic Information

Item Value
gene id G317967
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10582093 ~ 10582292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376566
GCCTGTTTGTCTCCAAGCTTGCAGCCTGGAATGTAGGTGATAGATCTCCACTGACGGGACCTTGTGTTGGAGCTGGAGTGGTAGCGAGGTCCTGAGGGTCCGTGGAGGACCTCCACCTCTGGTGGAAAGCTCTAAAAAGCATCtcaatgtgtttttctctttctagaCCATAAGGTAAAGGCTGGGCTGTTATAGTGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376566 True 200 lncRNA 0.51 1 10582093 10582292

Neighbor

gene id symbol gene type direction distance location
ccl20a.4 NA coding upstream 47642 10532984 ~ 10534451 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 234705 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 293869 10196108 ~ 10288224 (+)
trnar-ucu_12 NA coding upstream 394269 10187751 ~ 10187824 (+)
sdhc sdhc coding upstream 396026 10173820 ~ 10186067 (+)
vwa5b2 LOC108280745 coding downstream 73117 10655409 ~ 10704492 (+)
mul1a LOC108280869 coding downstream 129416 10711708 ~ 10719149 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding downstream 256463 10838755 ~ 10860296 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 279667 10861959 ~ 10878656 (+)
map6d1 LOC108280841 coding downstream 297949 10880241 ~ 10897751 (+)
G317964 NA non-coding upstream 6546 10575313 ~ 10575547 (+)
G317963 NA non-coding upstream 6941 10574814 ~ 10575152 (+)
G317946 NA non-coding upstream 57319 10524486 ~ 10524774 (+)
LOC117599937 NA non-coding upstream 61885 10517588 ~ 10520208 (+)
G317939 NA non-coding upstream 71900 10504163 ~ 10510193 (+)
G318016 NA non-coding downstream 65629 10647921 ~ 10648193 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding downstream 124522 10706814 ~ 10707508 (+)
LOC117595750 NA non-coding downstream 259348 10841640 ~ 10911606 (+)
LOC113533665 NA non-coding downstream 263424 10845716 ~ 10846012 (+)
LOC113533661 NA non-coding downstream 265176 10847468 ~ 10847786 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 13186 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 19099 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 604177 9958993 ~ 9977916 (+)
G317390 NA other upstream 1166929 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1768683 8811595 ~ 8813410 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 148054 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 817592 11399884 ~ 11464769 (+)
G318439 NA other downstream 885007 11467299 ~ 11469499 (+)
G319170 NA other downstream 2182763 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2438850 13021142 ~ 13154527 (+)

Expression


Co-expression Network