LOC120573939


Basic Information

Item Value
gene id LOC120573939
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 792434 ~ 941506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU203536
CAGGGAACTGAGAATAAAAACTCCATTTTGATCACAGAAGGAAACATGACACACATTAAAGCAACAGAGAGACGTCTGTAAACTAGTTTCCTCTCCAGATGAAGGTGTGGACTCTGCTATGAGTCAGTGTGAGGACAGTGAGGAGGGAGCCCCTCCCTCTAAAGCCACTCTGAGTGGGGAACATGACAGCCAGACCAAAGCTCAGAGGTGAGAGGACCATCTCTAACTGTCCACCAATCAGATCACTCCACCATCATTATTCACACTCAACACGTCCATAATGTCAGATTCATCAGAGACCAGACAGTCGTGAACCTggacccagctgtgtgtccatgaagagtgacTGGTCTATGGGTGGTTTTATAGACTTCAAAGATGGACACCACCCTGATGATCAAAGATGTCTGTGAACTGGAACTGGACACAAGCACAGTatacagaaaactcaaactgtctgacaacaacaggaaggtgacacatGTGGAGGAGGATCagtcatatcctgatcatccagacagATTTGACTTCTGGTCTCagttgctgtgtagagatggtctgactggtaaCGAGTTTAGCCCCggaggcagaggagagagtTTATGTAGCAGTGAGTTACATAGGAAtcagaaggagaggagaaagtAAAGACTGTTGGTTTGGAtggaatgatcagtcctggagtctgatctGCTCTGATCGTGGTTACTCTGTCCGTCACAATAACATAAGAACAGTCCTCtattcctcctctgtctctaacagagtagcagtgtatgtggactgtcctggtggcactctgtccttctacacagtctcctctgactcactgatccacctctacaccttcaacaccacattcactcagcctctttATCCTGGGTTTATGGTCTGgtctggttcctcagtgtctctgtgtcctctgcaggACTGAGAGACTCTCCTGTGGACAGAAACACTGACTAAAGATCACCTGCTGAAATCAAAGTTTAGTCTGTTCACCATCACACACTCTGCACTGTGAAGCAGACTCAAACAGTAAACATTAATTTGTCTGATTTCATCTCTTTGATTATCAACACTTAAACTGTTGAACTAGAAACACTTTGATTCCTGTCATCAGCTGACTCTTTACCTGAGGATACACTGTATAAAGCTGAGTGAATGTGATGTTACTTTAATTTTTTCGTACATCTGTGTCCATGGATACGAGCTGTACCAAGAGCTTCTCTGATATCAGATTTGTGTTGTAATAAACTTTTACATTCAAGTAAGAACAACA
>TU203543
CAGGACGGACCATGGTGGACTGCAGTGGTTGAGACCTGGTCTgaggaagtATGTCTGTGAACTggaactggacacaaacacagtatacagaaaactcaaactgtctgacaacaacaggaaggtgacacatGTGGAGGAGGATCagtcatatcctgatcatccagacagATTTGACTTCTGGTCTCagttgctgtgtagagatggtctgactggtcgctgttactgggaggtcgagaggagaggagaggtttaTGTAGCAGTGAGTTACATAGGAAtcagaaggagaggagaaagtAAAGACTGTTGGTTTGGAtggaatgatcagtcctggagtctgatctGCTCTGATCGTGGTTACTCTGTCCGTCACAATAACATAAGAACAGTCCTCtattcctcctctgtctctaacagagtagcagtgtatgtggactgtcctggtggcactctgtccttctacacagtctcctctgactcactgatccacctctacaccttcaacaccacattcactcagcctctttATCCTGGGTTTATGGTCTGgtctggttcctcagtgtctctgtgtcctctgcaggACTGAGAGACTCTCCTGTGGACAGAAACACTGACTAAAGATCACCTGCTGAAATCAAAGTTTAGTCTGTTCACCATCACACACTCTGCACTGTGAAGCA
>TU203545
tccagttcacatttccattcactttcagagagctgaatgtgctgaaagataaaaagtacagcttggtggaacttgttgattacttctttagtgaaaccaaagaagcaggaatctgcaggtttgaagaggccgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactgagatcctgactgatgttacaaagtccacctcagtggatgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagaggtcagagggttcactgacccacagaaggaggagtacttcaggaagagattcagaaatgagcaggccagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctagAGGAcgtgttgaagaccagagagggaggagagctgccctggaccctgactgagatgtacatccacttcctggtggtcCAGTCTAAAGTGAAGAAcatcaagtatgatggaggagctgagacagACCACCCAGTAGTCCAGAGAGCAGGAAGATGATggagtctctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgacagagtgtggcatcgatatcacagcagcctcagtgtactcgAGAGTGTTCACTCAGATCTTTAAGGATAGAGGAACTGTACCAGGACAATGTGTTCAGCTtcatccatctgagtgttcaggagtttcttgctgctcttcatgtccatctgacattcatCAACTCTGGGGTCCACCTGCTGACAGGAAAACAAATAACATTCCCGTTTCTTCCAGAGTGCTGTGGACGACAAGGCTTTtcagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttccctgcagaccaatcagaagCTCC
>XM_039823854.1
caaacacacctggactccatatttatgctgctggaggaggagatCGGGACTTTTGTGAAAAAcgagctgaagaagatccagaaggttctgagtccagattacccagaatgcttagagagtcagagggaggatgaggaggtgtTGGACggtgaggatgaagaggagaggaggagcagcagagaggcatttctgaagatcacaatgcacttcctgaggagaatgaagcagAAGGAGCTGGCTGACCATCTGCAGAGCAAAAGTCCTGCTGCAGTTGGTAAACGTAAACTCAAATCTAAGCTGCAGaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaactgttctgaatcagatgttcacagagatctacatcacaGAGGAAGGGCCTGTAGAGGTCAATaatgaacatgaggtcagacagattgaaacagcatcctGGAAACCAGACAAACCAGAAACAAGAATCAGAcaagaagacatctttaaaaccccacctggaagagatgaaccaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaaagccaaccaggacatccagttcacatttccattcactttcagagagctgaatgtgctgaaagaaagaaagtacagcttggtggaacttgttgatcgcttctttagtgaaaccaaagaagcaggaatctgcaggtttgaagaggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactgagatcctgactgatgttacaaagtccacctcagtgggtgtgctgctgacaaacctcatcaggggcaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgaatgtgttgacatggtgacagaggtcagagggttcactgacccacagaaggaggagtacttcaggaagagattcagagatgaggatcaggccagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgtcacatcccagtcttctgctggatcactgctacagttctggaggacatgtcgaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaagtgaAGAACATCAAATATTATGGAGGAGCTGAGATGGATCCACACTGGAATAAAAAGAGCAGGAAGATGATCAAGTCTCTGGGAAAACTCGcatttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgatagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactgtaccaggaTAAGTTGTTCTGCTTCATCCAtttgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatcatctctggagtcaacctgctggCAGAAGAACAAACATCCTCCCGTCAACTTACAAAATTACGTTTCTACAAGAGTGCTGTGGCCAAGGCCTTACggagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagagGCTCCTACAAGGTCtgctgacacagacaggaagtagctcaAAGACCAAGAAAACAGTTAActacatcaagaagaagatcagtGAACATCTGTCCGCAGAGAGAAGCATccatctgttccactgtctgaatgaactgcatgatcgttctctagtggaggagatccaacagtccttgagttcaggaagtctctccacagataagctgtctcctgctcagtggtcagctctggtcttcatcttaaTGTCATCAGAGAAAGATCTGGAcatgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgcctgtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctacaggattcaggagtgaagcacCTGTCggctggactgaagagtccacactgcagactggaaactctcaatctgtcaggctgtctggtCTCAGAAGAAGACTGTacttctctggcctcagctctgcgctccaacccctcccatctgagagtgtTGGACttgagctacaatcatccaggagactcaggagtgaagctgctgtcAGCTGGACTTAAGGATCCAAACTGGAGATTGGACACTCTCAGGACGGACCATGGTGGACTGCAGTGGTTGAGACCTGGTCTgaggaagtatgtctgtgaactggaactggacacaaacacagtaaaccgaaaactcaaactgtctgacaacaacaggaaggtaaCACATGTGGAGGAGGATCAGTCATATCCTGAttatccagagaggtttgactcctgtcctcagctgctgtgtaaaaatggtctgactggtcgctgttactgggaggtcaaGATGAGAGGAGTGGTTTATATATCattgagttacagaggaatcagcaggagaggagacagtaaagactgtgtgtttggagggaatgatcagtcctggagtctgaggTGCTATGGTGTTGGTTACTCTGTCTGGCACAATAACAGAAGAACAGACCTCactccctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctctacaccttcaacaccacattcactcaaccTCTTTATCCTGGGTTTATGGTCTGGTCACCTGgttcctctgtgtctctgtgtcctctgcaggACTGAGAGTCTCTCCTGTGGAGAGAAACACTGACTGAAGATCAGCTGCTGAAATCAAAGTTCAGTCTGTTCACCATCACAAACACTACAGACCAAACATGAATAATTTGTGCCAATAAATCACGTGtcaatttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203536 False 1282 lncRNA 0.44 4 933962 941506
TU203543 False 677 lncRNA 0.48 2 803061 855981
TU203545 False 1042 TUCP 0.49 2 846923 867735
XM_039823854.1 True 3092 mRNA 0.48 7 792434 806284

Neighbor

gene id symbol gene type direction distance location
tspan35 tspan16,LOC104961105 coding upstream 38767 730975 ~ 753667 (+)
znf653 LOC106601361,LOC104961106,LOC107553636,LOC103393609 coding upstream 71152 693092 ~ 721282 (+)
rab3db rab3d,LOC102304664,LOC100703329,LOC102790513,LOC101465588 coding upstream 141412 557705 ~ 651022 (+)
cnn1b cnn1 coding upstream 265718 493970 ~ 526716 (+)
tlcd4b LOC102213572,LOC107094073,LOC101466924,LOC102791841,LOC100706733 coding upstream 342362 414793 ~ 450072 (+)
LOC120573835 NA coding downstream 91663 1033169 ~ 1062593 (+)
LOC120573839 NA coding downstream 126974 1068480 ~ 1107296 (+)
LOC120573834 NA coding downstream 461476 1402982 ~ 1419898 (+)
jmjd8 jmjd8 coding downstream 544088 1485594 ~ 1498100 (+)
LOC120573865 NA coding downstream 826135 1767641 ~ 1776571 (+)
G150309 NA non-coding upstream 53695 736723 ~ 738739 (+)
G150378 NA non-coding upstream 72990 719033 ~ 719444 (+)
G150377 NA non-coding upstream 82635 706974 ~ 709799 (+)
G150376 NA non-coding upstream 101675 690198 ~ 690759 (+)
G150310 NA non-coding upstream 137379 518578 ~ 655055 (+)
G150411 NA non-coding downstream 46854 988360 ~ 988778 (+)
G150415 NA non-coding downstream 69819 1011325 ~ 1012085 (+)
G150419 NA non-coding downstream 116509 1058015 ~ 1059050 (+)
G150426 NA non-coding downstream 137553 1079059 ~ 1081115 (+)
G150428 NA non-coding downstream 140375 1081881 ~ 1099631 (+)
epor NA other upstream 79961 662030 ~ 712473 (+)
LOC120574137 NA other upstream 133710 619267 ~ 658724 (+)
tmem205 NA other upstream 244940 538953 ~ 547494 (+)
G150336 NA other upstream 561523 228962 ~ 230911 (+)
G150326 NA other upstream 591003 159075 ~ 201431 (+)
LOC120574276 spns1,LOC102775667 other downstream 14875 956381 ~ 1021269 (+)
G150304 NA other downstream 37935 979441 ~ 1023521 (+)
G150398 NA other downstream 193703 1135209 ~ 1220823 (+)
G150450 NA other downstream 228787 1170293 ~ 1175782 (+)
G150394 NA other downstream 274376 1215882 ~ 1216669 (+)

Expression


Co-expression Network