G154109


Basic Information

Item Value
gene id G154109
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11489906 ~ 11493649 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU208814
ACCGcagtaaaataatatttattctttcttttttttaaccgttTTTACCTGGAAAGTGCATCATAGATTTTACAGTAAGCAAAATTCATATTTAAGACATTAACACAACCGAGCGACATTCACAATCATCATTTTTGGACAGTGTGTTGCATAGGAGGAAACGTCTCTTAAGCAAATgtataaaaattatttatatttagatGAAAACGGGGGAGGTCGATGAGGGCTTTGTTGTTCCATCAGAGCAGGTGTTGTTGGTCAGTTGCCACTTTATGCCTTAACCATGGCAGCGAACTCTGCAGGAGACAATAAAATACCCAGTTAGCGTCTacgaaaagcatccaaagaacgATGTAACAATTCTGCATGAGTTGATGAGAGTCACCATCAGCGCCAATCTTGCCGTCACCGTCGGTGTCAACGGCCTTAAGGAAAGTCTTGGTCTCGGCGTCGGTCAGTGCGCGTGCACCTGCCTTGAAGTTCTGCAGGAACAGCtcagctcctcctcctcaatGAATCCACTGTTGTCCTGGTCAATGATTTTGAAGGCCTTCTTGATCTCTTCGGCAGACTGGCCGGACATACCGCATGCCTTGAGGAATTTCTTGTGGTCGAATGTGCCAGGCTCTGGAAAGAATGCAGGGTTACTTGTTACTAAACTGTAATAGCTGGACAAAAAGTACATTGATGCTCCAAACACAAAGTCACACAGGGGAGGGCTGTGACTGTGATTTTGTTAAGTGTAGCTTGGAGAGTCAACCTTTGCACCCGTCCAGGGCTGCAGCGACTTCAGCATCTTTCAGTACTCCTGCGACGGCCATTTCGCTCTCTGGTTTCTTTGCTGTGTAGGGTACAGATGATACGGCCAAGACTCGAGTCGACTGCAGTGATCTTCCCGGTGTTCCCGGTGACCTTTTTATAGTTTCACGCCATCGAAATCTGAAGCATAAGATAACTGACACCGCCGACGAGAAGGGGGTGGCGAAAATGCGTCCTGCAGCCAGAGAGCGGTCTATTTTAAGTTTCACAAATGAAGACGCTTAAAAGGTGCGTTTGAAGAAGTCTTTAATGTCCACCACCCCGCACCCCTATGCTAAGAATAGGCATGTGTACTGCTGAGTAGAACGAATTGCAAGTGCTGCTGGCAACACACATTATTCAAAAGGGTAATACTGAGCATGCATGCATTATGGCTGGCGTAACTGGCACTAAATGGTTGTTTTCCCCTCttttcatttaacattttttatttggaaGGCATGGACTATTGTATTCATGAATTTACAAGGGAAAAGTAGGCTATTTCTTTCGCACTTAGTTGCATGTCTTGATAAAGTAGGTTATATATTCTGTCTGTGATATTGTCTGCCCCCATACCTCCCAATCATTTGTGTTTTGTCAGATTTAGCCTGTATCTGGGAGAATATTTTAATCAGGTTTCTAATGGTCTacttaaatcaaatcaagtgCAAATCAGTCATAGTTATGGTACGTATAGAAACAGTGTAAAATTCCAAATGTCAATCAGTCCCATTTTTACTGGCAAGTCAAAAATGCATTGTTCAAATTAGTTAGAAAGTGGACTGAGGGATGTTTCTCTTCAATTGCTTATTGCACACAACCTCTTTTCAGGTACAGGTACCATTCCTGTTGTTCTAAAAGTTTAGGGTGTTTAAAAGCAGAAGGGAATGCTCATGcagatgattttctttttttttgcaacctCCAAACAGAgtaacaaagagacagagattcATCTTGACATTTCAATATAATGCATCTCCACTGTCAGGCTGAAATTAGCTttgacctgtaggtggcagcaCTGCCCTGCGGGTTAAGGGTGAGGAGAAGGCAGACTGCTGTCACTATGCCTCTCTCTGTTTTGACTACTGGTTGATGGTAACGAGCTCAGGGTGTCATCTGATAGGGTTGAGGGTTTACATATTGCTGACTTGCAGTTCCCTGAGCATTCATAGCTTCCCCTTGAATTTCAATTTGACTTAAATATGATATGATtccctttttaaatgtatttctttgcTAATACATGTTTGGAATATTTTCCAAATGTAGCATATCTAAACACTACAATAAAACTGAATGAATTGAATAATTTTACGACCCCCTCAGATCACTAAAGATTTGCATCCAAGCACCAGATTCAAAGGTTCTGCTGATGCAACGGTGGCTGCCAAGAGCCCTCCTGTTGCCACAGCACATCATCTAATTGACTACTCAGCAGTTGGTGGAGAAAAAGACCTTGGAACAGACCACCTAATTACAGTATGTGGGACAGCTATCCATTGCAAACCTCCCTGTAGGCAGGAAGTATCTGAGCAAAGCCCCAGGGCTTGTGCTTGTGCCCCTGAGTTCAGCTATACTTCCCTTCTCATTTACCATTTATCAAAACAAGTGCAGGTCAGTTCAATTGCACCTTTAGAGCATTCAAAATCTCTGGCAGGTGGAAACTAATTTCTTCCTCAACCCATTGTGTTGACATAACCGCAGCTAGAGAATACACCACGGTTGACGAGTACAAAGACGACTGACCTGAAGGAGATGATTTTACACCAAAAGTGTATTTATTCCTAGTTTTTCACTCTTCCTCAAAAGTGCAGATGGTGTTGTACAGTTTCCACAAGTCATGCTTCAGAACATTTGACACATCTGAGTAACATTCACAGTAAAATATGTGTTTCATGTACATAAggtataaaaaaatattctttcAGCTGATGATCACTGATCTTGCAAGGCGTTTGCTGTTCCATGAAAAGAATTGGATCTTGGTCAACGGATATTTATCCTTTTACAAGCATGGCAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208814 True 2829 lncRNA 0.42 3 11489906 11493649

Neighbor

gene id symbol gene type direction distance location
zgc:161969 LOC103361864,LOC104946073,LOC101481854,LOC100704716 coding upstream 24397 11462758 ~ 11465509 (+)
slc25a19 slc25a19 coding upstream 138446 11348216 ~ 11351460 (+)
mrps7 mrps7,LOC102783021 coding upstream 148423 11338051 ~ 11341483 (+)
nup85 nup85 coding upstream 161693 11319249 ~ 11328213 (+)
LOC120574067 NA coding upstream 280068 11202778 ~ 11209838 (+)
lmtk2 lmtk2 coding downstream 8634 11502283 ~ 11532752 (+)
bri3 bri3 coding downstream 58318 11551967 ~ 11557728 (+)
LOC120574416 NA coding downstream 141969 11635618 ~ 11637632 (+)
LOC120574840 NA coding downstream 289748 11783397 ~ 11786551 (+)
fam20ca LOC103361753,LOC100706308,LOC102196831,LOC101477115 coding downstream 376304 11869953 ~ 11905482 (+)
G154051 NA non-coding upstream 137446 11352210 ~ 11352460 (+)
G154038 sumo2 non-coding upstream 171413 11310425 ~ 11318493 (+)
G153917 NA non-coding upstream 407199 11081649 ~ 11082707 (+)
G153916 NA non-coding upstream 409248 11079752 ~ 11080658 (+)
G153915 NA non-coding upstream 410226 11078455 ~ 11079680 (+)
G154124 LOC108239293,LOC104946078,LOC104918844,LOC101480216,LOC102194634,LOC100693182 non-coding downstream 5200 11498849 ~ 11501165 (+)
G154149 NA non-coding downstream 150507 11644156 ~ 11649921 (+)
LOC120574841 NA non-coding downstream 198259 11691908 ~ 11695459 (+)
G154186 NA non-coding downstream 334064 11827713 ~ 11827921 (+)
G154193 srebf1 non-coding downstream 432472 11926121 ~ 11971275 (+)
LOC120574068 NA other upstream 264657 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 416080 11063859 ~ 11073826 (+)
G153808 spag9 other upstream 737008 10752160 ~ 10752898 (+)
G153646 NA other upstream 1148283 10250377 ~ 10341623 (+)
G153433 NA other upstream 1423164 10065460 ~ 10066742 (+)
G154254 NA other downstream 592212 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other downstream 595724 12089373 ~ 12093558 (+)
G154461 NA other downstream 1349774 12843423 ~ 12846597 (+)
LOC120574968 LOC102294452 other downstream 1523310 13016959 ~ 13026416 (+)
vasnb vasn other downstream 2162366 13656015 ~ 13692303 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2350221 NA non-coding NW_023493685.1 JAAXML020000486.1 22602 ~ 25392 (-)
mexican tetra (Astyanax mexicanus) G9083 NA non-coding NC_035898.1 CM008301.1 8816046 ~ 8818568 (+)