LOC120575506 (LOC100697827)


Basic Information

Item Value
gene id LOC120575506
gene name LOC100697827
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12735444 ~ 12737483 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU209226
CAGGAATCGGTAGAGAAGCTGTCGGGGTGGAGCAGAACTACCAAGACAACCACGCACAATAAAAGTGGATCTCGGTGTCACACAGCGATAGAAATATGAGCTGTCACTCATCAGTCATCACTTTACTCGTTTGTTCGCCTCACTAACTGACACAGTAACCTTAGCAACGGCCCGGGTAGATTTCGCCTGCCTGTATGGCGGGTCTCTCTTATTTAGTACTCCGATTTTCGGGCTCCGCTGGTCGGACTTACGGAGTGTTTTCCAAAGGCTTGACGAGGACTTTGTTGATATTTTTTGATCTCGCATGGCGACTGCGAATCAGATTCCCTTATATCTATCTTGTGGCGTCAATGATGTTTAATGTCAGATTGCAGGTCCACATTGAAATCCACTGAGTCTTCAATGTCTGTATTTGGACTTAAATCAATAAATTGTGGGCAATGCCATGTTTCAGCTCTCTAAAAGGAACAGTTTGACACCGATGTGGAGGAAGAGGACACTTAATTCTGTGTGATGATGCAACAAAGTGGCATGGCTGGTTGTTGCGGTCAGACTTGGCTACACAAGCCCAGTGCCTTCTGGGAAGGACGGCAGAGAACTTTGCAAAAATGAGCTGGGGTGAGCTGTGATGTGTGAGGGTGGAAGAGGAAACGATGGCTCGCATTAACCCTTAGAACTCGCCACCTGAGATCCCGGAGCCGCTCCATCCAGGTGGATTTTGAGACTCTTTGGATATCAAGGATTTTGGCGAGGATTAGAAAACAGATGATTCTTACTGTGGTACTTTGTAGCTACTCTTCATTGCCTGACATGTATGTTTATTAGGTGCTCAGTGTCAACATCtcactttaatttaaaaagtacATCTACACCGCATGACACAAACGAGCATGATTTTCGTCCTCGGTGGCTCGGACACTTTATTTGGGGTTAGCTGTGTAAGCGGTACATGCTCTTTCAACAGAGGTTTGTTGTCGGAGGACAGCACAGCTGCCAATACTGGAAATGTACAGTCTATTATTAAGTGCAGTCTCAAAAGGATACGGTGCATGTCTTCTCTGTGTTCGCACACACATGTCGTTACACTCGTTGTTGTTCATTCTGCATATCAGCTGCACAGGAAAGGTGGCGTTGGTGAAAAACCCTACttgcaaagttttttttgttattttttagttgcatatgtttttatttctgtgaaAAATGTGCTTGTGGGAGTTTGAAAT
>XM_039826336.1
AGTCCTCCCGTTGACCATAACAGGAATCGGTAGAGAAGCTGTCGGGGTGGAGCAGAACTACCAAGACAACCACGCACAATAAAAGTGGATCTCGGTGTCACACAGCGATAGAAATATGAGCTGTCACTCATCAGTCATCACTTTACTCGTTTGTTCGCCTCACTAACTGACACAGTAACCTTAGCAACGGCCCGGGTAGATTTCGCCTGCCTGTATGGCGGGTCTCTCTTATTTAGTACTCCGATTTTCGGGCTCCGCTGGTCGGACTTACGGAGTGTTTTCCAAAGGCTTGACGAGGACTTTGTTGATATTTTTTGATCTCGCATGGCGACTGCGAATCAGATTCCCTTATATCTATCTTGTGGCGTCAATGATGTTTAATGTCAGATTGCAGGTCCACATTGAAATCCACTGAGTCTTCAATGTCTGTATTTGGACTTAAATCAATAAATTGTGGGCAATGCCATGTTTCAGCTCTCTAAAAGGAACAGTTTGACACCGATGTGGAGGAAGAGGACACTTAATTCTGTGTGATGATGCAACAAAGTGGCATGGCTGGTTGTTGCGGTCAGACTTGGCTACACAAGCCCAGTGCCTTCTGGGAAGGACGGCAGAGAACTTTGCAAAAATGAGCTGGGGTGAGCTGTGATGTGTGAGGGTGGAAGAGGAAACGATGGCTCGCATTAACCCTTAGAACTCGCCACCTGAGATCCCGGAGCCGCTCCATCCAGGTGGATTTTGAGACTCTTTGGATATCAAGGATTTTGGCGAGGATTAGAAAACAGATGATTCTTACTGTGGTACTTTGTAGCTACTCTTCATTGCCTGACATGTATGTTTATTAGGTGCTCAGTGTCAACATCtcactttaatttaaaaagtacATCTACACCGCATGACACAAACGAGCATGATTTTCGTCCTCGGTGGCTCGGACACTTTATTTGGGGTTAGCTGTGTAAGCGGTACATGCTCTTTCAACAGAGGTTTGTTGTCGGAGGACAGCACAGCTGCCAATACTGGAAATGTACAGTCTATTATTAAGTGCAGTCTCAAAAGGATACGGTGCATGTCTTCTCTGTGTTCGCACACACATGTCGTTACACTCGTTGTTGTTCATTCTGCATATCAGCTGCACAGGAAAGGTGGCGTTGGTGAAAAACCCTACttgcaaagttttttttgttattttttagttgcatatgtttttatttctgtgaaAAATGTGCTTGTGGGAGTTTGAAATCACAGAATTGACAGTAAGGATGATTACatttggaaataaataaattaatgaaaCCACAA

Function

NR:

description
PREDICTED: small integral membrane protein 10-like protein 2A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209226 False 1226 lncRNA 0.45 2 12735503 12737463
XM_039826336.1 True 1305 mRNA 0.44 2 12735444 12737483

Neighbor

gene id symbol gene type direction distance location
LOC120575015 LOC103393018,LOC102303741,LOC101486233,LOC102226583,LOC106518738,LOC108437157,LOC108239256 coding downstream 8420 12694885 ~ 12727024 (-)
axin2 LOC103361462 coding downstream 307938 12413431 ~ 12427506 (-)
tex2 LOC103361461 coding downstream 378352 12342804 ~ 12357092 (-)
LOC120574755 ern1 coding downstream 394161 12320594 ~ 12341283 (-)
samd9l LOC102078066,LOC102793943,LOC102205815,LOC102308574,LOC101466743 coding downstream 415180 12309749 ~ 12320264 (-)
LOC120574004 stk19 coding upstream 9334 12746817 ~ 12749160 (-)
LOC120574003 LOC104947694,LOC103373535,LOC108239260,LOC101158446,LOC103141614 coding upstream 15987 12753470 ~ 12760056 (-)
trnal-uag_2 NA coding upstream 105410 12842893 ~ 12842974 (-)
cdr2a LOC104947687 coding upstream 106913 12844396 ~ 12853731 (-)
si:ch211-139g16.8 NA coding upstream 123869 12861352 ~ 12863585 (-)
LOC120574720 NA non-coding downstream 56334 12677493 ~ 12679110 (-)
LOC120574718 NA non-coding downstream 166748 12568219 ~ 12568696 (-)
LOC120574719 NA non-coding downstream 167634 12567178 ~ 12567810 (-)
G154368 NA non-coding downstream 333969 12400252 ~ 12401475 (-)
LOC120574757 NA non-coding downstream 361450 12361239 ~ 12373994 (-)
G154437 LOC104947690 non-coding upstream 29215 12766698 ~ 12768603 (-)
G154438 NA non-coding upstream 31926 12769409 ~ 12770122 (-)
G154446 LOC104918798,LOC100695608,LOC101483500,LOC105930091 non-coding upstream 41532 12779015 ~ 12781445 (-)
G154515 NA non-coding upstream 134075 12871558 ~ 12953388 (-)
G154517 NA non-coding upstream 136877 12874360 ~ 12931319 (-)
cep112 NA other downstream 169973 12427504 ~ 12565471 (-)
LOC120574419 NA other downstream 644463 12085985 ~ 12090981 (-)
G154033 NA other downstream 1509898 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 1597916 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 1654837 11078545 ~ 11080607 (-)
iqck NA other upstream 217491 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 235777 12973260 ~ 13012781 (-)
prkar1b prkar1b,LOC107661853,LOC107653458 other upstream 597966 13335449 ~ 13421951 (-)
tfap4 tfap4 other upstream 852000 13589483 ~ 13631836 (-)
med9 med9 other upstream 1313255 14050738 ~ 14057354 (-)

Expression


Co-expression Network