LOC120574545 (chchd5)


Basic Information

Item Value
gene id LOC120574545
gene name chchd5
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16153787 ~ 16156067 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU210688
CTTGACTGGCTCCACATGTAGAAGTACTGGTGCTATAACCTTGGTTGATCAGTTTCTTCGTTTGAGACAAGCCTAAAAAGAGCAACATGCAGGCTGCTATGGATATCACGGCAAAGTATTGCCATAAAGAAATGGAGGCGTATGGGTCATGTGTAGCCTCCAACCCATCGACATGGCAGTTAAAGTGTCATGAACTGAAGATTAAGGTTGCACAGTGCACATCATCACATCCAGTGATCCAGAAGATCAGACAGGATTGTTCCTCTGAGTTTGTAGAGTTTGAGCGCTGCCTGAGAGAAAACCAGGACAAACCTACCTCCTGCTCACAACATGTGGCTCGCTTTCTGGGCTGTGCAGAGACCGTAGACCTCAGTGGAGTAGACCCAGTACCTCAGCCATCGTAGCATTCAGGCATCTTCCATCGCCTTCAGATTACTCCTGTCTCCACAGCAGCACAGATGGGCTGGTCTCACAGGTGCCCCAGCCattttactgtatgtacagtgaCAGTTGTTAGGATACCTATTTTCCTCTGTGTGACTTAATGGGactatttttctttcttcaacAAAGATAAAGGAGATGAATGCAACATTACTGTGAATAAGACCATGTGTAGAATATGTAATTACTGCGTCGTTCTTCTTCTCATACTCCTCatgtaaatgttgtgtttatttgaaaataacaTTTATACTTGCCTTCTGTATGCAGGAAGTCTGTTTTTACA
>TU210689
CTTGACTGGCTCCACATGTAGAAGTACTGGTGCTATAACCTTGGTTGATCAGTTTCTTCGTTTGAGACAAGCCTAAAAAGAGCAACATGCAGGCTGCTATGGATATCACGGCAAAGTATTGCCATAAAGAAATGGAGGCGTATGGGTCATGTGTAGCCTCCAACCCATCGACATGGCAGTTAAAGTGTCATGAACTGAAGATTAAGGTTGCACAGTGCACATCATCACATCCAGTGATCCAGAAGATCAGACAGGATTGTTCCTCTGAGTTTGTAGAGTTTGAGCGCTGCCTGAGAGAAAACCAGGACAAACCTACCTCCTGCTCACAACATGTGGCTCGCTTTCTGGGCTGTGCAGAGACCGTAGACCTCAGTGGAGTAGACCCAGTACCTCAGCCATCGTAGCATTCAGGCATCTTCCATCGCCTTCAGATTACTCCTGTCTCCACAGCAGCACAGATGGGCTGGTCTCACAGGTCTGAGTCAGAGTCAAATATTAAACTGGAATGAATCACTCCCGCACAAACTCTCCTGAGTACTCAATGACTAAGAAATAGGGAGTCTGGGAagaaaggagaaggaggaggctgTCCACTTCTAATCTGCGGGActactgagagagacagagggagtaTATTGAGTTATGAGCCCTGTGACCACTAAGCAGAACATACCTTTTCTGG
>XM_039824928.1
ATCAGATAGTATTAGGTGTGTAGTGTAGCTTCTGCAAAGACTTGACTGGCTCCACATGTAGAAGTACTGGTGCTATAACCTTGGTTGATCAGTTTCTTCGTTTGAGACAAGCCTAAAAAGAGCAACATGCAGGCTGCTATGGATATCACGGCAAAGTATTGCCATAAAGAAATGGAGGCGTATGGGTCATGTGTAGCCTCCAACCCATCGACATGGCAGTTAAAGTGTCATGAACTGAAGATTAAGGTTGCACAGTGCACATCATCACATCCAGTGATCCAGAAGATCAGACAGGATTGTTCCTCTGAGTTTGTAGAGTTTGAGCGCTGCCTGAGAGAAAACCAGGACAAACCTACCTCCTGCTCACAACATGTGGCTCGCTTTCTGGGCTGTGCAGAGACCGTAGACCTCAGTGGAGTAGACCCAGTACCTCAGCCATCGTAGCATTCAGGCATCTTCCATCGCCTTCAGATTACTCCTGTCTCCACAGCAGCACAGATGGGCTGGTCTCACAGGTGCCCCAGCCattttactgtatgtacagtgaCAGTTGTTAGGATACCTATTTTCCTCTGTGTGACTTAATGGGactatttttctttcttcaacAAAGATAAAGGAGATGAATGCAACATTACTGTGAATAAGACCATGTGTAGAATATGTAATTACTGCGTCGTTCTTCTTCTCATACTCCTCatgtaaatgttgtgtttatttgaaaataacaTTTATACTTGCCTTCTGTATGCAGGAAGTCTGTTTTTACAAATTCTTATTGAACCATCTCATTAAATTTGACATCAGACTTGTATTAATCATC
>XR_005641872.1
ATCAGATAGTATTAGGTGTGTAGTGTAGCTTCTGCAAAGACTTGACTGGCTCCACATGTAGAAGTACTGGTGCTATAACCTTGGTTGATCAGTTTCTTCGTTTGAGACAAGCCTAAAAAGAGCAACATGCAGGCTGCTATGGATATCACGGCAAAGTATTGCCATAAAGAAATGGAGGCGTATGGGTCATGTGTAGCCTCCAACCCATCGACATGGCAGTTAAAGTGTCATGAACTGAAGATTAAGGTTGCACAGTGCACATCATCACATCCAGTGATCCAGAAGATCAGACAGGATTGTTCCTCTGAGTTTGTAGAGTTTGAGCGCTGCCTGAGAGAAAACCAGGACAAACCTACCTCCTGCTCACAACATGTGGCTCGCTTTCTGGGCTGTGCAGAGACCGTAGACCTCAGTGGAGTAGACCCAGTACCTCAGCCATCGTAGCATTCAGGCATCTTCCATCGCCTTCAGATTACTCCTGTCTCCACAGCAGCACAGATGGGCTGGTCTCACAGGTGCCCCAGCCattttactGTCTGAGTCAGAGTCAAATATTAAACTGGAATGAATCACTCCCGCACAAACTCTCCTGAGTACTCAATGACTAAGAAATAGGGAGTCTGGGAagaaaggagaaggaggaggctgTCCACTTCTAATCTGCGGGActactgagagagacagagggagtaTATTGAGTTATGAGCCCTGTGACCACTAAGCAGAACATACCTTTTCTGGTTCAATTATTAAAGCTTTGAAGAGGAGGGGAAAATGATTCATTTCTTTTCAAGTGTAATCTCTT
>XR_005641873.1
ATCAGATAGTATTAGGTGTGTAGTGTAGCTTCTGCAAAGACTTGACTGGCTCCACATGTAGAAGTACTGGTGCTATAACCTTGGTTGATCAGTTTCTTCGTTTGAGACAAGCCTAAAAAGAGCAACATGCAGGCTGCTATGGATATCACGGCAAAGTATTGCCATAAAGAAATGGAGGCGTATGGGTCATGTGTAGCCTCCAACCCATCGACATGGCAGTTAAAGTGTCATGAACTGAAGATTAAGGTTGCACAGTGCACATCATCACATCCAGTGATCCAGAAGATCAGACAGGATTGTTCCTCTGAGTTTGTAGAGTTTGAGCGCTGCCTGAGAGAAAACCAGGACAAACCTACCTCCTGCTCACAACATGTGGCTCGCTTTCTGGGCTGTGCAGAGACCGTAGACCTCAGTGGAGTAGACCCAGTACCTCAGCCATCGTAGCATTCAGGCATCTTCCATCGCCTTCAGATTACTCCTGTCTCCACAGCAGCACAGATGGGCTGGTCTCACAGGTCTGAGTCAGAGTCAAATATTAAACTGGAATGAATCACTCCCGCACAAACTCTCCTGAGTACTCAATGACTAAGAAATAGGGAGTCTGGGAagaaaggagaaggaggaggctgTCCACTTCTAATCTGCGGGActactgagagagacagagggagtaTATTGAGTTATGAGCCCTGTGACCACTAAGCAGAACATACCTTTTCTGGTTCAATTATTAAAGCTTTGAAGAGGAGGGGAAAATGATTCATTTCTTTTCAAGTGTAATCTCTT

Function

symbol description
chchd5 Predicted to be located in mitochondrial intermembrane space.

NR:

description
PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210688 False 730 TUCP 0.44 4 16154181 16156027
TU210689 False 682 TUCP 0.48 5 16153851 16156027
XM_039824928.1 True 823 mRNA 0.42 4 16154128 16156067
XR_005641872.1 False 805 transcript 0.46 5 16153787 16156067
XR_005641873.1 False 786 transcript 0.46 5 16153787 16156067

Neighbor

gene id symbol gene type direction distance location
LOC120574526 LOC103364137,LOC104952516,LOC108256828 coding downstream 45891 16106007 ~ 16107896 (-)
LOC120574529 NA coding downstream 49179 16101744 ~ 16104608 (-)
vac14 vac14 coding downstream 54798 16095711 ~ 16098989 (-)
trim35-13 LOC103364132,LOC102792268,LOC102305948,LOC101478242 coding downstream 61062 16089414 ~ 16092725 (-)
adgrl1a adgrl1,LOC103392844 coding downstream 163602 15894009 ~ 15990185 (-)
lpar2a lpar2,LOC104918571,LOC103392869 coding upstream 52183 16208250 ~ 16215393 (-)
brd4 LOC104952514,LOC103370560 coding upstream 65292 16221359 ~ 16229857 (-)
LOC120574499 LOC101164155,LOC101071797 coding upstream 126813 16282880 ~ 16296424 (-)
nr5a5 LOC104952484,LOC103370553 coding upstream 185027 16341094 ~ 16344963 (-)
soul5 NA coding upstream 190311 16346378 ~ 16348909 (-)
G155462 colgalt1 non-coding downstream 35295 16117119 ~ 16118492 (-)
G155461 NA non-coding downstream 38265 16115108 ~ 16115522 (-)
G155460 NA non-coding downstream 41724 16110699 ~ 16112063 (-)
G155439 NA non-coding downstream 99031 16053990 ~ 16054756 (-)
G155359 NA non-coding downstream 261856 15891021 ~ 15891931 (-)
G155481 NA non-coding upstream 14856 16170923 ~ 16172305 (-)
G155493 NA non-coding upstream 48461 16204528 ~ 16223250 (-)
G155500 pet100 non-coding upstream 103752 16259819 ~ 16262030 (-)
G155507 NA non-coding upstream 123424 16279491 ~ 16280224 (-)
G155508 NA non-coding upstream 124316 16280383 ~ 16281568 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other downstream 338418 15813058 ~ 15815369 (-)
LOC120574502 LOC103367168,LOC100699371,LOC108241234,LOC101473146,LOC106529605 other downstream 365272 15746791 ~ 15788515 (-)
LOC120574537 NA other downstream 408215 15741763 ~ 15745572 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other downstream 429365 15717847 ~ 15724422 (-)
metrnla metrnl,LOC102778978 other downstream 704270 15443124 ~ 15449517 (-)
LOC120574432 LOC103392867,LOC102312066,LOC104952514,LOC105932031,LOC102787456,LOC101484431,LOC102198284 other upstream 74392 16230459 ~ 16259025 (-)
G155583 eif3g other upstream 413379 16569446 ~ 16642131 (-)
angptl6 angptl6 other upstream 465759 16621826 ~ 16626733 (-)
mgrn1b mgrn1 other upstream 856344 17012411 ~ 17023208 (-)
polr3k polr3k other upstream 876918 17032985 ~ 17035040 (-)

Expression


Co-expression Network