G159484 (csnk1d,LOC106596082,LOC106595407,LOC103154369)


Basic Information

Item Value
gene id G159484
gene name csnk1d,LOC106596082,LOC106595407,LOC103154369
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 31152559 ~ 31158441 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU216097
tattaatttatttacacttttaaaatacacaaatacagtGGCATTACAAATGAGGAGCAAAAGTCTTAAGGTGGGAGTGGAAAGAGAGATTTCCCATGAATCCACAGTAAGAGATGCATTGTGGGACATGAGCGACCATATCCACCGCAGTTAAAAGCAACATTGGACAGGAGGTGACAAAATGAAGAACTGAGAGAAGCAGACATGAcagactgaagaaaaaaaacaaactattatCCCTTAAAGTGTACTTGCATCTATCATAGCCATCATCAGTGTGACAAACAAAATTAatccatcacttttttttttctttttgttttttctttcaagCCCCCAGgtgaggtatatatatatatgtgtatatatatttttttaagctaATGGAGTGAGGCATTCCCAGTCCCTCCATACACCGCCGTTACTATCCAGAACCGTACAGCGGCTCACGTGGACGTGGTAGACAGTAAGCACATCCTATACACAACAGAACAAACATGTACAAATTACCACTACAACCCCTTCGCCCTCAAAACTACAGAAAAACTGCCTACGATACTTTGCAACCAGTCTACCACATCGAGGATTTCCTACTTCCAAAAATCGGCAGGATTCATTGGTCGGATCGGCCGACTGCTCAGGTGGAAGGACACAGGTCACCGGGGCCCGTGGCTCCAGTAGCGCTGGGACCTTTTCTTAAGACAACACTCAGTCCGAAAACCTCGCTCTCCAAAAAACCTCCTCGCTTTCCATTGAGCCCGATGTTAAGGCACGCCGGTCCATTTTCTACCCGGACTCTGCCAGCTCTCGTCAGACCTTCTCATGGGGGTGTCCCGAGTTGGTCAGAAACACCAGCTTATCAAGGTTTAATTGAAGTGCACTAATAACATTAAGCCTTTTTCGTCTGTTGTATCTCTGAACTTTATTGTGCGCCATCTACGCCaccagtttttattattttttttttatttcacgaTACAGGAACACTTGGCATTTAGTATCGTGCTCCCATAAAGTCGTGGTACTTGCAACAAACTAAAAAATGGTCGAAAGGAAGGCAAAAGGGGATAAGATATAAGCCTCCCCCACTCCCCATTGTGTGGATCAATCCCCGAAAGCCCTGGATCTTACATTTCCCATGACGCAACTCAATAGTCTTCTCTACAGATGACAATCTACACCCGTTTTCACAGGCTGAGCAGTGCTCTTCGGGACTAATAAACTGATCTTGACGTGTAAACTTGGTGGAGTGTGCCTTTAATGTTGTCATGTGTCAAGGGCAGACTGGCTCCAGTAGAGTTGACATAGTTTAGTTGTACACTGTgctaccatgtagcaacatcCGCTGCATTGGCACATAGTCaatgttaaattatttaaataaggCTAGAAGACCAAACTCTTTAAAGAGCCGTTTTTTCTGCTTAACAGGATGCATTTCTCCAACaatattgactgcaaaataacCACTATTATGCCTCCGTTGTGGAGTTGTTGCGCCATCTTGGATGGGGCTATACCAGCGCCTCGTTTGCTCTGTGCTGGTGGACTGAAACTGTAGAGTAGTAGGATGTAGCATTCCATTGGAAAAATGACATTATTTTAAGCATGGGTTAGGCAGACCGTGAGCGTTTGACGAGGTCTAGGTAGGAAATGGCCAGAGGGTCAAGTGGTCCAGAGTGAGGTCAGGATGTTAAAACCCTGAAAGTAAATACGCCTCAACATGTTTATCCCCCACCCCCTTTGAGCTTGTAGAACCCTAAGACagaaccacacaaacacacacacaacaaaaccacATCACTATTCACCGGCTTAAAAACAACATCTCATCCATTCAATGTGGACAGATCGATTCATTCACAGCTTTCCAAGGCAGCACACCGCATCACAAcctgaagacagacagaaaatgtgCCGTGTGTTTTTTGGATTTACAACAACATCCTGGTTCCAATGCACCTGAGGaggacccaaaaaaaaaaaaaataataaaaaaaattactctGGGGGATCTATGGGATCACCTTTGAAAATAGAGCATTCAAACACCTTTTGTCCTATTCTTAAAAACAATGTGGGTTATCCTACCTTTACATTTAAAccttaaacaaaataaaaagttgaCTTGTGGGGGTGTAAGGAGTCTCAGTGTCCTTTAACACTGCCATGATGGATCACACCTCTTCCTGCTTTCAGAATCAAAAATGTCCCACatgctattttatttttaacagctTACAGAATCATTCTCCAGCCCTTTGTGAAGTCTGATCAGTGGAGCTGGTGTCAGAGAAGTTTTAATGCTAAAGAACAAAAATAAGTAAAACCAAAGTTTAAAAAGAAAGTGAATCCATGGCTTGATCAACTgtaagaggggggggggggggttccacATCTTCCATTGGAGAAGAAGGGAAGCCGTGGCTGCTACCAAACTGTACTCCACCCGCCTACCTCtcacaccccacccccccacacacacacacacacacactcctggttGTGTATCTTTTCCTCTGTAAAGTGAACAAGAGTGCAGCCTGACTCAGCATTAGTTGGTAGTCCTCTGTCATTTAGGAGTCCTGTGTGTAATATTtaggtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgctgCAGGTGGAGCACGTTGAGGCCTACATGGTGCACGGATGGATGGGAGGGTTTCACCGTGGAGCTGCGGACTGAAGGCCACTGGGTGTGACCCGGGACAGGGCCTGTGAGGACATGCGGGATGTGTCCTGGCGTCCCGTCAGGTCTGAAGAGGAGATGTTGACAGGTGCCCCACGATGAAGACGCATGCTcaccttcctctccttctccagacctgTGTGTGTGAGGCAGGGTTGAGTGGTGAGGGGGCTGCGACGTCCGGAGCCGCCCTGGCTCTCCCAGAGGCCGAGGGCATGCCCCTGGCTGCGGGGTTCCTGCTGTGCCTCAGCCTCTCCTCACGCTCCCGACGCTCCCGCTCTGCGTCTTCCACGGCCCTGTTGGCAccctgacacacacgcacattcgATTTGGCTCTCAATATCCAGTAGCAGGTACCTTTTGAACCTGAATAGCCGCTTTCTGGTTTTCCTTACATACCAGGTTATTATTCCAAGTGTCTGacgacattatggaaaggatccctacgtttttgttaaagagtaagatcctttttgtttagtAAACACGAGACAGCCCCGAAATCTAcatcgccaaacccaccagaacagtatttttattgtaaaaacacacttcattcaaagtcaaccGGAACCAAACCAAACTGTCAAAGGCCGTCTTGGTtctccactgttccaacaatcgcCACTCTGGTGTGGtggaaataaacccttaattcagatatttacatgtgaaaatatgctggctctatacacgctgaaAGTACGgattatttacatagagtctggtgggttagGCGATAGCGATTTCAGAGCGGTTTCTGGGTAAACAAAAGATCTTACTCTTTGACAAAAAGCTCCATCTccgtagggatcctttccataatgtagtcagacacttaggataataatctgagcctgtcggtggcaaaaactgcacttttagtggaccaaatttTTGTCTATACTATCTATAGGactacattgcagcccggtttaCAGCTGCCGGTTACAGTGCTCTAGCTCAATACTTGACCAATTATAAAGATTGTTGTGTTAACAGTAGACACTAAAGACAcccaatgcatgggaaaataaggttgaaaaataccgaaATTACCCTTTTAAGTCAATTTATGGCATTGACCTTTCGAAATGTTCTCTTTGGTACTAATGAAATTCACGAGTGGTCCAGACAGTCTCCCTCACCCCACAGTACAAGTGATTTACAACTTGAACATGTTTGGATCTAGTTAACACGGTATGgatctttaaataaaaagaagtCAGTGTCTTTAAGGCGGAATATAAATGAAACTGGACTGAATGATAGTATGCAGCCAAATACTGGGACAATACATTTTCTGAAACGAATCCCTCAATGTGATAATATAACTTACAAATTTGAGCATGTTCCAGTCAAAGACGTAGTCGTAGGAGAAGCCCTGTCTGTGGAAGAGGTTCCTGAAGAGCTGGCGGAGGTACGAGTAGTCAGGCTTGTCGTCGAAGCGCAGCGAGCGGCAGAAGTTCAGGTAGGTGGCGAACTCGGATGGGTAGCCTTTGCAGAGGACCTCGATTGGCGTGGACATTTTCTTCTCACTGATGCGTTCGTACTTCTGCCTTTTGGTGGCGGCTTTGAGGCCCTGCCAGGGCAGAGAACCCAGGTTGAAGTACATGAGGACGTAGCCCAGCGACTCCAAGTCGTCCCGCCTGGACTGTTCGATGCCCAGATGTGTGTTTATGGAGGCATAGCGGGCAGTGCCGGTCAAGTTCTTGTTCTCGCGGTAGGGgatgtgctggtgtgtgcgggCGTCGCGGTACTTCTTGGCCAGGCCGAAGTCGATGATGTAGACCAGGTTGCCCTTCTTGCCCAGCCCCATCAGGAAGTTGTCAGGCTTCACGTCTCTGTGGATGAAGTTCTTGGAGTGGATGTACTCAATGCGGCTGATCTAGACGGGAGAG

Function

symbol description
csnk1d Enables protein serine/threonine kinase activity. Involved in several processes, including microtubule cytoskeleton organization; non-motile cilium assembly; and protein localization to organelle. Located in several cellular components, including Golgi apparatus; microtubule cytoskeleton; and perinuclear region of cytoplasm. Implicated in advanced sleep phase syndrome 2. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: casein kinase I isoform delta-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216097 True 4620 TUCP 0.46 6 31152559 31158441

Neighbor

gene id symbol gene type direction distance location
LOC120575060 NA coding upstream 51024 31095992 ~ 31101535 (+)
LOC120575292 clpp coding upstream 125198 31017798 ~ 31027361 (+)
LOC120575043 NA coding upstream 175623 30966535 ~ 30976936 (+)
yipf2 yipf2 coding upstream 204326 30942014 ~ 30948233 (+)
LOC120575290 LOC102311041,LOC101466951,LOC102199031,LOC102794005 coding upstream 455658 30691399 ~ 30696901 (+)
engase engase,LOC106595560 coding downstream 15449 31173890 ~ 31191037 (+)
coil coil coding downstream 47372 31205813 ~ 31217392 (+)
LOC120575058 LOC104935253,LOC103360075 coding downstream 60475 31218916 ~ 31239164 (+)
LOC120575293 LOC104935253,LOC103360075 coding downstream 94040 31252481 ~ 31273670 (+)
LOC120575055 LOC103360074,LOC103468195 coding downstream 131262 31289703 ~ 31304952 (+)
G159470 NA non-coding upstream 84621 31067603 ~ 31067938 (+)
G159411 NA non-coding upstream 210931 30940488 ~ 30941628 (+)
G159396 NA non-coding upstream 233890 30918469 ~ 30918669 (+)
G159373 NA non-coding upstream 260523 30890307 ~ 30892036 (+)
G159312 NA non-coding upstream 489360 30661914 ~ 30663199 (+)
LOC120575064 NA non-coding downstream 154952 31313393 ~ 31317839 (+)
LOC120575063 NA non-coding downstream 159577 31318018 ~ 31322371 (+)
G159561 NA non-coding downstream 190958 31349399 ~ 31399762 (+)
G159602 NA non-coding downstream 270329 31428770 ~ 31429280 (+)
G159606 NA non-coding downstream 272976 31431417 ~ 31432738 (+)
mpp2a mpp2,LOC101475212,LOC100701914 other upstream 668846 30465788 ~ 30483713 (+)
LOC120575288 NA other upstream 849007 30240310 ~ 30303552 (+)
LOC120574203 NA other upstream 905666 30232704 ~ 30246893 (+)
G159073 hdac5 other upstream 1680960 29468925 ~ 29471599 (+)
LOC120575282 NA other upstream 1769942 29365843 ~ 29382617 (+)
G159833 NA other downstream 1273308 32431749 ~ 32445464 (+)
LOC120574088 NA other downstream 1305921 32464362 ~ 32465533 (+)
G159938 NA other downstream 2003954 33162395 ~ 33162811 (+)
LOC120574300 NA other downstream 2149012 33307453 ~ 33311605 (+)
LOC120574293 NA other downstream 2304814 33463255 ~ 33543161 (+)

Expression


Co-expression Network