LOC120574300


Basic Information

Item Value
gene id LOC120574300
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33307453 ~ 33311605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU216677
agTGACAGCCttcacatcatcatcagcagcagcagcagtagagaATATAATCCACGGAGGTTTTATATCGGTATGTACGGCGTTTTAATCACTGTTCTGTCGTCTAAGAAGCTGGTAAACTTATCAAAAGATCCAACTTCTTTCCAGGAAAGATTACGGTGTCTTTAGCGAAGGCTCCATCAGCACACAGGACAGAGCCAACAGCGACGGTTTCCAGACCTGCCGAGCCTGATGACTCCTCTGGGATTGTTGCTTCTGTGAAAGCCAGGCTGAAGGCCCCGGCCAGCCCCTTCTAGCTCCTCAGCTCAGATGATATGTGGACTTCAGCATGTGGAGCCAGGCTGTCGTCATGTTGTGTTAAATTGTGACAAGCACAGGGTACAACCCAACATCCCAGCTGCTGTAGCTATGGAGACCGAGGATCACTGCCCTGCTGCTGTGGTGGCCACAGACTCTCAGgagaccagtgaagatccAGTTGGAGTGGTGCTGATCACACAGCTGGAGTGGTCTTTCAGCAGGGCTCTGAAGCAGTTTCCCGGTCCCAGCGGTCCCAGCGGTCCCAGCACACAGCTGCTACCAGAGGCAGTCTTTCATGGATACAGGAGGAGTCTCTGAGCCGGTCTACAGTGGAGCGGATTGGGTCAGACATCCtggttcaacaacaacaacaacaacaacaacaacaacatcatcatcatcatcatcatcatcatcatcatcatcaagcagcagcagcagccgcatcagcagctgcagcagaaaaaGATGACCAGGAACTGTTTAGCCTACAGTCAGCTGAAGTCGTAGATGGAGTCAGAGGAGAGGGCGAACAGGAAGTCAGCAGTGCAGCTTCCAACAGGTCGCCTGTGCAGGTTCTGTCATCAACCCCTAAAGCAGGGCCCTGACAGccctcacatactgtacatgacaGCTTCCCCGGGGTACCAGGGAAATACATCTACTGCCCCTCCAGAGTGTTCTTCCCCTACAAGGCACAGGGCATGGGGAAGGAGATGACCTGGGGGTTCAAACTGTTGGACTTCTATGAGGCTGAGAGACACAAAAATTCAAAGAGAAGACAGACAAATGGACTGCTCACCCACCAAACGACAAATATATCCCTCCTCGCACGCATTACCCACGCACACAAGACACACCACTGTGCATTGTCAGGACTGTTTCTTCTGTTTTCATAGCCAAGCAATTGTGATCTTTAGTTTAATTTAACTGTATTCACCTTTACTGGACGTCTGGTCtgattcatcatcatcatcatcatcatcctcacaTAGTCTCTCAGCACCTTTACATGCACTCTAGTGTTCCC
>TU216679
agTGACAGCCttcacatcatcatcagcagcagcagcagtagagaATATAATCCACGGAGGTTTTATATCGGTATGTACGGCGTTTTAATCACTGTTCTGTCGTCTAAGAAGCTGGTAAACTTATCAAAAGATCCAACTTCTTTCCAGGAAAGATTACGGTGTCTTTAGCGAAGGCTCCATCAGCACACAGGACAGAGCCAACAGCGACGGTTTCCAGACCTGCCGAGCCTGATGACTCCTCTGGGATTGTTGCTTCTGTGAAAGCCAGGCTGAAGGCCCCGGCCAGCCCCTTCTAGCTCCTCAGCTCAGATGATATGTGGACTTCAGCATGTGGAGCCAGGCTGTCGTCATGTTGTGTTAAATTGTGACAAGCACAGGGTACAACCCAACATCCCAGCTGCTGTAGCTATGGAGACCGAGGATCACTGCCCTGCTGCTGTGGTGGCCACAGACTCTCAGgagaccagtgaagatccAGTTGGAGTGGTGCTGATCACACAGCTGGAGTGGTCTTTCAGCAGGGCTCTGAAGCAGTTTCCCGGTCCCAGCGGTCCCAGCGGTCCCAGCACACAGCTGCTACCAGAGGCAGTCTTTCATGGATACAGGAGGAGTCTCTGAGCCGGTCTACAGTGGAGCGGATTGGGTCAGACATCCtggttcaacaacaacaacaacaacatcatcatcatcatcatcaagcagcagcagcagccgcatcagcagctgcagcagaaaaaGATGACCAGGAACTGTTTAGCCTACAGTCAGCTGAAGTCGTAGATGGAGTCAGAGGAGAGGGCGAACAGGAAGTCAGCAGTGCAGCTTCCAACAGGTCGCCTGTGCAGGTTCTGTCATCAACCCCTAAAGCAGGGCCCTGACAGccctcacatactgtacatgacaGCTTCCCCGGGGTACCAGGGAAATACATCTACTGCCCCTCCAGAGTGTTCTTCCCCTACAAGGCACAGGGCATGGGGAAGGAGATGACCTGGGGGTTCAAACTGTTGGACTTCTATGAGGCTGAGAGACACAAAAATTCAAAGAGAAGACAGACAAATGGACTGCTCACCCACCAAACGACAAATATATCCCTCCTCGCACGCATTACCCACGCACACAAGACACACCACTGTGCATTGTCAGGACTGTTTCTTCTGTTTTCATAGCCAAGCAATTGTGATCTTTAGTTTAATTTAACTGTATTCACCTTTACTGGACGTCTGGTCtgattcatcatcatcatcatcatcatcctcacaTAGTCTCTCAGCACCTTTACATGCACTCTAGTGTTCCC
>XR_005641850.1
TCTTAAACTACGGCTGTCATATATTTGTGGCCACAAGCTGGATTTCGGGGGCGCTGTTTCCCCCTGTGGATAAAGTTAAGGAGagactcttttcttctttgtttcctgtttacagTGACAGCCttcacatcatcatcagcagcagcagcagtagagaATATAATCCACGGAGGTTTTATATCGGTATGTACGGCGTTTTAATCACTGTTCTGTCGTCTAAGAAGCTGGTAAACTTATCAAAAGATCCAACTTCTTTCCAGGAAAGATTACGGTGTCTTTAGCGAAGGCTCCATCAGCACACAGGACAGAGCCAACAGCGACGGTTTCCAGACCTGCCGAGCCTGATGACTCCTCTGGGATTGTTGCTTCTGTGAAAGGCTGAAGGCCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216677 True 1330 TUCP 0.50 6 33307566 33311605
TU216679 False 1300 TUCP 0.51 7 33307566 33311605
XR_005641850.1 False 390 lncRNA 0.47 4 33307453 33309271

Neighbor

gene id symbol gene type direction distance location
LOC120574295 NA coding upstream 255437 33038717 ~ 33052016 (+)
LOC120574734 LOC105899973,LOC106607192 coding upstream 680772 32606839 ~ 32626681 (+)
LOC120574291 LOC103393542,LOC105013241,LOC106600850 coding upstream 881082 32410079 ~ 32426371 (+)
LOC120574894 LOC104927160,LOC101485211,LOC102310132,LOC102784865 coding upstream 997960 32279167 ~ 32309493 (+)
ube2z ube2z coding upstream 1049903 32243837 ~ 32257550 (+)
LOC120575298 LOC106591577,LOC106596222,LOC106591186,LOC106574345,LOC106604344,LOC106574346 coding downstream 197502 33509107 ~ 33511123 (+)
LOC120575300 NA coding downstream 254865 33566470 ~ 33569127 (+)
trnap-cgg_4 NA coding downstream 283703 33595308 ~ 33595379 (+)
trnap-agg_18 NA coding downstream 307532 33619137 ~ 33619207 (+)
trnap-agg_19 NA coding downstream 322460 33634065 ~ 33634138 (+)
LOC120574301 NA non-coding upstream 136108 33170492 ~ 33171345 (+)
G159906 LOC102792843 non-coding upstream 307909 32999030 ~ 32999544 (+)
G159899 NA non-coding upstream 362498 32944750 ~ 32944955 (+)
G159887 NA non-coding upstream 540002 32767251 ~ 32767451 (+)
G159845 NA non-coding upstream 731223 32575484 ~ 32576230 (+)
G159969 NA non-coding downstream 38303 33349908 ~ 33350887 (+)
LOC120574309 NA non-coding downstream 42591 33354196 ~ 33355109 (+)
G160070 NA non-coding downstream 118032 33429637 ~ 33429860 (+)
G160071 NA non-coding downstream 128946 33440551 ~ 33440762 (+)
LOC120574303 NA non-coding downstream 146938 33458543 ~ 33461050 (+)
G159938 NA other upstream 144642 33162395 ~ 33162811 (+)
LOC120574088 NA other upstream 841920 32464362 ~ 32465533 (+)
G159833 NA other upstream 861989 32431749 ~ 32445464 (+)
G159484 csnk1d,LOC106596082,LOC106595407,LOC103154369 other upstream 2149012 31152559 ~ 31158441 (+)
mpp2a mpp2,LOC101475212,LOC100701914 other upstream 2823740 30465788 ~ 30483713 (+)
LOC120574293 NA other downstream 151650 33463255 ~ 33543161 (+)
G160243 NA other downstream 855475 34167080 ~ 34167646 (+)
G160318 LOC104961098 other downstream 871494 34183099 ~ 34183661 (+)
LOC120574901 NA other downstream 1537984 34849589 ~ 34928475 (+)
G160423 mvp other downstream 1650495 34962100 ~ 34966949 (+)

Expression


Co-expression Network