trnap-agg_18


Basic Information

Item Value
gene id trnap-agg_18
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33619137 ~ 33619207 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_883
ggctcgttggtctagggtaTGATTCTCGCTTAGGGTGCGAGAGgtcccgggttcaaatcccggACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_883 True 71 tRNA 0.61 1 33619137 33619207

Neighbor

gene id symbol gene type direction distance location
trnap-cgg_4 NA coding upstream 23758 33595308 ~ 33595379 (+)
LOC120575300 NA coding upstream 50010 33566470 ~ 33569127 (+)
LOC120575298 LOC106591577,LOC106596222,LOC106591186,LOC106574345,LOC106604344,LOC106574346 coding upstream 108014 33509107 ~ 33511123 (+)
LOC120574295 NA coding upstream 567121 33038717 ~ 33052016 (+)
LOC120574734 LOC105899973,LOC106607192 coding upstream 992456 32606839 ~ 32626681 (+)
trnap-agg_19 NA coding downstream 14858 33634065 ~ 33634138 (+)
LOC120573877 NA coding downstream 130460 33749667 ~ 33754337 (+)
LOC120575259 NA coding downstream 191464 33810671 ~ 33814588 (+)
LOC120575301 NA coding downstream 233152 33852359 ~ 33854888 (+)
LOC120574905 NA coding downstream 370270 33989477 ~ 33996069 (+)
G160123 NA non-coding upstream 35856 33582603 ~ 33583281 (+)
G160121 NA non-coding upstream 53874 33564947 ~ 33565263 (+)
G160120 NA non-coding upstream 60914 33558003 ~ 33558223 (+)
G160090 NA non-coding upstream 117707 33484306 ~ 33501430 (+)
LOC120574303 NA non-coding upstream 158087 33458543 ~ 33461050 (+)
LOC120574302 NA non-coding downstream 19422 33638629 ~ 33639114 (+)
G160164 NA non-coding downstream 157732 33776939 ~ 33783583 (+)
G160167 NA non-coding downstream 184109 33803316 ~ 33803848 (+)
G160193 NA non-coding downstream 239087 33858294 ~ 33858593 (+)
G160196 NA non-coding downstream 270078 33889285 ~ 33890763 (+)
LOC120574293 NA other upstream 75976 33463255 ~ 33543161 (+)
LOC120574300 NA other upstream 307532 33307453 ~ 33311605 (+)
G159938 NA other upstream 456326 33162395 ~ 33162811 (+)
LOC120574088 NA other upstream 1153604 32464362 ~ 32465533 (+)
G159833 NA other upstream 1173673 32431749 ~ 32445464 (+)
G160243 NA other downstream 547873 34167080 ~ 34167646 (+)
G160318 LOC104961098 other downstream 563892 34183099 ~ 34183661 (+)
LOC120574901 NA other downstream 1230382 34849589 ~ 34928475 (+)
G160423 mvp other downstream 1342893 34962100 ~ 34966949 (+)
LOC120575316 NA other downstream 1426510 35045717 ~ 35055656 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnap-ugg-230 NA coding NW_023493868.1 JAAXML020000511.1 49345 ~ 49415 (-)
eurasian perch (Perca fluviatilis) LOC120572066 NA misc NC_053124.1 CM020921.1 33599110 ~ 33599954 (+)
tiger barb (Puntius tetrazona) trnap-agg_10 NA coding NC_056702.1 CM032071.1 26199580 ~ 26199650 (-)
mexican tetra (Astyanax mexicanus) trnap-agg_25 NA misc NW_019171705.1 APWO02001303.1 3047 ~ 3117 (+)