trnap-agg_10


Basic Information

Item Value
gene id trnap-agg_10
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26199580 ~ 26199650 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_639
ggctcgttggtctagggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_639 True 71 tRNA 0.61 1 26199580 26199650

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_8 NA coding downstream 144 26199358 ~ 26199436 (-)
LOC122343915 NA coding downstream 1322 26198152 ~ 26198258 (-)
trnaq-cug_7 NA coding downstream 2117 26197392 ~ 26197463 (-)
trnap-agg_9 NA coding downstream 2525 26196983 ~ 26197055 (-)
trnas-gcu_7 NA coding downstream 2739 26196759 ~ 26196841 (-)
trnaq-cug_8 NA coding upstream 341 26199991 ~ 26200062 (-)
LOC122343916 NA coding upstream 1106 26200756 ~ 26200862 (-)
trnas-gcu_9 NA coding upstream 2316 26201966 ~ 26202044 (-)
trnap-agg_11 NA coding upstream 2535 26202185 ~ 26202259 (-)
trnaq-cug_9 NA coding upstream 2947 26202597 ~ 26202668 (-)
LOC122343921 NA non-coding downstream 29665 26169806 ~ 26169915 (-)
trnap-agg_2 NA non-coding downstream 30885 26168624 ~ 26168695 (-)
trnas-gcu NA non-coding downstream 31098 26168403 ~ 26168482 (-)
LOC122343923 NA non-coding downstream 32290 26167185 ~ 26167290 (-)
LOC122342449 NA non-coding downstream 178196 26020548 ~ 26021384 (-)
G31399 NA non-coding upstream 38270 26237920 ~ 26238238 (-)
LOC122342589 NA non-coding upstream 104012 26303662 ~ 26304672 (-)
trnay-gua_23 NA non-coding upstream 107709 26307359 ~ 26307445 (-)
G31402 NA non-coding upstream 228502 26428152 ~ 26433786 (-)
G31413 NA non-coding upstream 279066 26478716 ~ 26478933 (-)
G31394 NA other downstream 24331 26173699 ~ 26175249 (-)
G31314 NA other downstream 638382 25559040 ~ 25561198 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other downstream 1438794 24754056 ~ 24760786 (-)
G31120 NA other downstream 1704402 24306501 ~ 24495178 (-)
G31400 LOC102197881 other upstream 124829 26324479 ~ 26325236 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other upstream 1166762 27366412 ~ 27367649 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other upstream 1179409 27379059 ~ 27382827 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other upstream 1184103 27383753 ~ 27389398 (-)
G31503 pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334 other upstream 1339705 27539355 ~ 27615941 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnap-agg_18 NA coding NC_053126.1 CM020923.1 33619137 ~ 33619207 (+)
tiger barb (Puntius tetrazona) trnar-acg_28 NA non-coding NC_056702.1 CM032071.1 26971912 ~ 26971986 (+)
mexican tetra (Astyanax mexicanus) trnap-agg_25 NA misc NW_019171705.1 APWO02001303.1 3047 ~ 3117 (+)