rps2 (rps2,LOC104918830)


Basic Information

Item Value
gene id rps2
gene name rps2,LOC104918830
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12052727 ~ 12055182 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823907.1
tcagttttcttttaaaggaaatATCGCGATAAAGACTTCTACATAAAACCCGGCGGGACTTCTCTTCGGTCTTCTTCCTGTTATTACGATCACCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTTCGCGGAGGTTTTGGGGCAGGTGGCCGCGGCAGGGGCCGTGGACGCGGCAGAGGCCGTGGCCGGGGCCGCGGTGCACGGGGCGGCAAGGCCGAGGACAAGGAATGGGTGCCAGTCACCAAGCTGGGCCGCTTGGTTAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTACCTGTACTCTCTGCCCATCAAGGAGTCTGAGATCATCGACTTCTTCCTGGGTTCTGGTCTGAAGGATGAGGTGCTCAAGATCATGCCTGTCCAGAAGCAGACTAGGGCTGGTCAGCGCACCAGGTTCAAGGCCTTTGTTGCCATTGGCGACTACAATGGCCATGTGGGTCTGGGGGTGAAATGCTCCAAAGAGGTGGCCACAGCCATCCGTGGTGCCATCATCCTGGCCAAGCTGTCTATTGTCCCCGTCAGGAGAGGTTATTGGGGTAACAAGATCGGCAAGCCCCACACCGTGCCCTGCAAGGTGACTGGCCGCTGTGGCTCTGTCCTGGTGCGTCTCATCCCTGCCCCCCGTGGTACTGGCATTGTGTCCGCCCCTGTGCCCAAGAAGCTGCTCATGATGGCTGGTATCGATGACTGCTACACCTCTGCAAGGGGCTGCACCGCCACCCTTGGCAACTTCGCCAAGGCCACCTTTGATGCCATCTCCAAGACCTACAGCTACCTGACCCCTGATCTGTGGAAGGAGACGGTCTTCACAAAGTCTCCCTACCAGGAGTTCACTGACCATCTGGCCAAGACTCACTCCAGGGTGTCTGTGCAGAGAGGACAGCCTGTCCAGGCCCCTCCCTCCTAAACTTTTTGTACAGAGAATTGTTGAATAAACATTCTGAAACGACA

Function

symbol description
rps2 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2).

NR:

description
PREDICTED: 40S ribosomal protein S2

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02981 RP-S2e, RPS2; small subunit ribosomal protein S2e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823907.1 True 980 mRNA 0.57 6 12052727 12055182

Neighbor

gene id symbol gene type direction distance location
rnf151 rnf151,LOC102775723,LOC100708193 coding upstream 495 12049325 ~ 12052232 (+)
noxo1a NA coding upstream 25526 12023082 ~ 12027201 (+)
gid4 gid4 coding upstream 33611 12013852 ~ 12019116 (+)
drc3 NA coding upstream 39347 12008838 ~ 12013380 (+)
LOC120574417 rai1 coding upstream 83890 11916104 ~ 11968837 (+)
LOC120573979 rpl3l,LOC102799413 coding downstream 3465 12058647 ~ 12063061 (+)
LOC120573928 hs3st6 coding downstream 52678 12107860 ~ 12120826 (+)
LOC120575138 hagh,LOC100699784,LOC107092812 coding downstream 73609 12128791 ~ 12133455 (+)
LOC120575115 haghl,LOC100699516,LOC104918824,LOC101076411 coding downstream 78790 12133972 ~ 12137255 (+)
e4f1 e4f1 coding downstream 88278 12143460 ~ 12150996 (+)
G154215 NA non-coding upstream 32219 12020278 ~ 12020508 (+)
G154204 NA non-coding upstream 77015 11975019 ~ 11975712 (+)
G154193 srebf1 non-coding upstream 81452 11926121 ~ 11971275 (+)
G154186 NA non-coding upstream 224806 11827713 ~ 11827921 (+)
LOC120574841 NA non-coding upstream 357268 11691908 ~ 11695459 (+)
G154225 LOC105933046,LOC101076874,LOC102218385,LOC106948144,LOC103469244,LOC103141651 non-coding downstream 8788 12063970 ~ 12064272 (+)
G154226 NA non-coding downstream 10098 12065280 ~ 12065508 (+)
G154227 NA non-coding downstream 12555 12067737 ~ 12068752 (+)
G154297 NA non-coding downstream 132441 12187623 ~ 12190042 (+)
G154307 NA non-coding downstream 161694 12216876 ~ 12218005 (+)
LOC120574068 NA other upstream 827478 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 978901 11063859 ~ 11073826 (+)
G153808 spag9 other upstream 1299829 10752160 ~ 10752898 (+)
G153646 NA other upstream 1711104 10250377 ~ 10341623 (+)
G153433 NA other upstream 1985985 10065460 ~ 10066742 (+)
G154254 NA other downstream 30679 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other downstream 34191 12089373 ~ 12093558 (+)
G154461 NA other downstream 788241 12843423 ~ 12846597 (+)
LOC120574968 LOC102294452 other downstream 961777 13016959 ~ 13026416 (+)
vasnb vasn other downstream 1600833 13656015 ~ 13692303 (+)

Expression


Co-expression Network