LOC120574417 (rai1)


Basic Information

Item Value
gene id LOC120574417
gene name rai1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11916104 ~ 11968837 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824675.1
agagagagagagagagagagaagcaagcaggcaggcaggcagactgcCGCTATCAGGGAATACTGGTGCCATTTTCAGCATCACAGGGTAAAAGCATTGAGCCTCGCCGCTGTACGCTCGGCTCAGCTCGCCTCTGCTCAGAACAGCTATACAAGAGGGGGATTGGAGGGACAACAAAAGGAGGAGAGAACGGCTGACCCCTAACACAGAACCCCTTATCCCCCTTCCCCCTTTCCCGTCTCACCTCACCTCCCCCTCCCAGCTCTGGCTACAGACGGAGAGAGTTATGCAGTCCTTCCGTGAGCGCAGCGGTGGTTACCACAGCAACCAACCCTGCTACCAGCAGGAGCCCCATGAATTATCCCGCCTGGAGACCTATCGGCAACACCCGCATCATCCCCATCCTCAGCACCCTCACCCAGGCCCTGGTCCACATCCAGGCCCAGGGCACACCAGGTCAGGCTATGAGGCTCACTCACTGGCGAACCCCACAAGCATGCCTTCAGCTGGAGGCCcgggagatggaggaggaccCAAGGACTGTTACAGCCAGCAAGCCTACCCTGGTTACCCAGGCAATGGTGGAGGGAATGGAAGTGGAAATGGGGGCTCAGCATCCTCGCAGGCAAAGAAATCCTTCAGAGGAAGCAAAGTGCCCCCTCCAAACCCAAGTCAGCACCTACAGGGTCCTGGGGGCTATAGTAACCACATGGGCCCTGGGAGTTACTCAGCCCAGTATGTGAGCGAGGGCCACCTCCAGCAGAAATGGGAAGACTCAGCCCAGTTAGCACAGTATGACCAGGACATGGTGGGGCGTATGGAGGCTGGTGGTACCCCTGCAACTGGCTCCTCCCAGTACATGGATCAGAACATGCTGGGCCACTCTCAGACCCAGTGCCACCAACCCTCCACCCCTGCCTATACCAGCCCCCACCATCAGGCCCACCCCCCTAACCCTGCCCCCTCCCCTCTCATGTACCCCCAGAGTCACCTACACTACCCCCAGCACTCACCCTCTCCTTCGCCATACATGGAAAAGTGCAGCCCTATGCCCCACTGTTATAAAGGTTACAACATACCCACCAATTCCCAGTATGGCAGACAAATGAGCAGCCACAGCAATCTGAAGCAGGGCGGTTACAGGTCGACCCAGAACAGTTACGGTTACCAGCAGCCTCCCACCAGAGGTTATGAACAGCAGCTCCCTTTACAGGCCATGACCAATCCCCAGGAGCCCCACCCTAAATACCAACACTACAGCCAACCCCAACAAAACTACTGTCTCTCAGAGCTGTCTGTCAGATCACCAGAACAGTATTATCAGACTTGTAGCCCCTCCTCAAGCCACTCCCCTGCACGCTCTGTAGGACGCTCACCCTCGTACAGCTCAACCCCTTCACCACTAATGACCAATCCAGAGTCCTTCCAGTATGGCCAACCTCCCATGACCCCTGGGGCAGCatcctcttcttcatcctcttcaGCTGGTATGCAGGAGCAAACCAGTACCAACACCATGTTGATGCCTCCCCGCTCACACCCCTCACCCAACGTGCCCCATGCAGCCACCCACAGCTACACTACTACACCGCAGGTCCCCACCATGAAAGAACGCTTCTCAGAGAAGCTGTTGTCAAACCCCAGCTTGTGGAGTCTGAATGCCCTTACCTCTCAGGTAGAGAACATCTCTAATAATGTCCAGCAGCTGCTGCTTTCAGAGGCCCTGGTGGCCAACAAGAAAGGCAGTAAGCGCAGCAGTGGAGGGAGCAACAGCAGTGCTGGAAGTGGAGCATCCGGCAAAAAGGGTGAGGAGTACAAAGGTCCTCCATTTCCAGACGGTGGTGGTGGTAGTGTTGGTGGAGGCCCCATGCAAGATCCTTACTCTACTCCACAGCACCAGCCAATGCCCATGGAACTACATGAAGGAGGCTACTCCAGCAGTAGTGATGAACAACTAGAGAGGGGCTACTACTACTGTGGCCAGGGCAGAAGTCCAGCACAGGCCCCAAATAACACACAACTCAGCCTGGACACAGCCTCTTCATGCTCCATGACCTCTCCAGATGATATGTCCACCAGGTCTGGAGACTCAGGTCTACACAACCTCACCCCTGACCCTACAAGATGTCAGTCAGGGCAGGGAGGAGATGGCATGAGTACTCCAGTGAAGAGCATTGGTGACGAGAGGTCTCCTACAAGCATTACAATCCCAAGTCCAATGAAACAAGAAAGGGACTCCCCTTCAGACATACAGCATATCAATGAGCCTGTCAAAGAGAACTTTGAAGAATCAGCCTGGACAGAGAAATCAGCTGACAAAGAGGAGGTGTCAACAGATAACACTCCTGACCGTGAGAGAGATTCAGACACAGCTAAATCTACAGAAAATCTGGAGAAATGGTCAGATGAAGAGAAATGCCCAGCTCTATACAATGAAGTTAACAAAGAGGTGACAGAAAAAAGCTATTGCTATAAGGAGACAGTGTACCAAGGGCTCCACAGTAAATATGACCCTGATGCAAGGGACTCAGTTGAGCAGTCCCCAGCAGCTCTCTCTGACTCCAGCCACAAGGAACACTTTGGCCAAGAGATTAAATCAGAGGCGTTCAAATCTGAGTCTCCGACTGCATCTGAGAGCTCCGTGAAAACATTGCCTTTCATTTCTAGGGGTGACCTTGAACAGGATCAATATTCCACAGAGAAGGAGGACAGCTCAGAGAACACCTCTCCAACCCCCCAAGTTGAGGCCTTGGACGAGAGCAACtcagacaagagagagagcagagatgaggaggatgaagaggaggaggaggaggaggggggtggaCAGGAGGAGGCTgaccaagaagaagaagaagaagaacaaCTTTCTCTTTGCCCTGCTCTGTCTGCAGAGGTTAGGGATGATCtgggggagggggagaaagTGGCATTGACTGAGGAGCACATGAATAAGAGAGATGGGCCAGAGAAGCTTCCTGGAGATCTCTGCAGCAGGACAGAGAGTCAGAGTACTGAGCTCCTTACTGACAACGAGCCTACAGGGGCGCCTGCCCATCcaaatgcagcagcagcaacagcagcagcagatgctTCCACAAGGGAGTCCGCCATTGGTGACACTGCTCCTCAGCCTCAGTCTGCTATGCCAGTCTTCTCAGCTCTCAATGACAAAACAACACCTCCAGCTCAGGCCAGGGATCATATTGATCACAGTGATGCTAAAGTGCTGGAGCCAGACTCTCCTCAGCTGCCAGGGAAGTCAATACCTCCCTCAGCCCCCTCCTGGGCAGACACTCCACCCTCCCCCAAAAAAGGTGATGAGGACATGGAGCCCGGCATCAGCTGTGCCAGTGCTGTGACCCCCTTGGCCAAACCAGAACCTGTGGCCCCGTCTGCTCAGCCGAGGGCATTTGGACGTAAGCATGCCAGGGGCAGAAGAAGAATCATGCATTCAGGTGTGGGAATCAGGCGACAGCTATGCTTGGAGATAGAGGGGGAAAAGGAACAGGAAGGGGCTCCCTCGCCTACACAGAAACCCTGCATGCCTCCGAGCAAAACTGTGCTATTCTCAGATCAAATGGACCTAGCTCATCAGGAATCTATTGTGAGCCAGACTCCCAAAATGCTAACTGGTGGTTTTAGTTCAAGAATGTGCACTCGTTCATTCAACGCACCAGACTTGCCACCCAAAGTTGAGCCTCATGTGAAGAGAAAACCAGGCCCAAAACCAGGGTCAAAGCCTTGCCTCAAACCAGGGCCAAAACCTGGACCAAAACCAGGAACCAAGCCAGGTCCAAAACCAGGGCATAAACCTGGTCTAAAGCCTGGGCCAAAACCTGGGCCAAAACCTGGGCCTAAACCAGGACCAAAACCTGTGTCCAATGAATCAGAGCAGCCACTGAAAATTGAAACTCCTGTAAAACGAAAACCAGGACCCAAACCAGGTTCAAAATCTGGGGCAAAGCCTGGGCCAAAACCTGGACCAAAACCCGGTCCAAAACCAGCTCTAAAGCCAGGTCCAAAACCAGGACCTAAGCCTGGACCCAAGCCTGCAGATGTTTTGCCCCCCGACAACACTGCACCTATCAAGGCCTCAGTGGGTCGCCCCAAAGGCTCAGTTTCTAAAGCAAAGCTGGTACAAGAAGAAACCAGTCAACCTTTGACAGGACTGCAAAGCAGGGGCAGGAAAAGTCCAAAAGCTACAATATCACAAGTAAACCAGGATGTAAAACCAGTAAACCAGGAAGAAAAACAAGCAAACCATGAGGTTAAGGCACCAGAGAAGGAGGGTAAGAATATGGTCTTGAGATCCAGAAAGCCCTCACAAGAAAAACTGTCAAAAGAAAAAATCATAGGGGAAGGTATTCTGCCCCAGACACTAACAGAAATTAAAGCCAGTGTTGATTCTCTAAAAGTAGATGAGCCTGTTACTGTGGTACAAACTGCAGTTCCGATCCTTAATGCAGTCAAAAACACAGAAGTTCCAGCAGACCCACCTGCACCACCTTCCCCACTGGTCCCAACTGAACAATCTGAAGAAAAGACATCACTTTCATTAAAACGGAAACTTAGCCCATTGCTTTCTATAACACcagtaaagaaaaagaggggTCCAAAGCCCAAACCAAAACCCTTTCCACCTCAACCCCCTCTGCTGGAACAGGTTGTCTCTACACCTAAAGAGAAGGGTGTCCGGGGCCCCAAAAGAAAGCGAGGGCCACCCAAGAAAGCTTCTGTTGTCACTCCCCCACCAAAAGACACTCCTCACAACATCAGTGAAACTGACATCACTACTGATGTGCCTGTGGTGCCTCCACAATGCCCCACTAAAACAAAAGTTCTCCCACCACGCAAAGGCAGAGGACAGAAATATGAGGCAATGGTGCAGAAAATAACATCTCCTAGCTCGAAGAAACACCTCCCAATTCTCCAGATAGACAGCAGTCTAACTGATGATGTGACAGCCAAGGCTTTGCCTCAACATGTCTCAAAAGAAGGTGAGACATCTATGATCATAAATAGCACTGAGCTAATAGAGGGAGAAGTGAAAAGCATAGAGTCTAGACAAGAAGGAGTGAAACAACACGAAGGTGCGGCGAGAAAAAAGGAGATGACacaagaaagagaaaagcacgAGGTGAGTCAAGAGACATCAACATCAGAGGAGGGGAGACAAGGGCTGGAAGAAGAGGTTGTAAATAAGCAAGAGACGAGACAAGAAACCATTAAACCAGGGACACAGCAGGTTGTTGGAACTGAGAAGGTTTGGAGCTCAATAGAGGCCCCAGTAGATGTCAAGGCTACAGGAGAGTGGACACAACAGGCCTCAGAAAGGGTATCTTCTGCTGCCACTAAGTCCGCCAGAACTAAAAGGAAGAGATGGGCCATGGTGGAAAGCACAGATGCCTCAGTAGTAGCATTGGAAGCAGGGAGCCTAATAGTTACAACACCAAGGCTAGCCAAGCAGAGGGCCATTAAAAACAACCATGAGATGCACCTAAaacagaggagaaagaagagaaaaggccAAGCCCCTCtagaacaaacagagacagtcAAGGAGACAAATATTGAAACAGCAGAACAACAACAGGAGAGGGTAGAAGATAAAGTAACCCCCACGGAGTCTACAGTACCTCTGCCAATCAGCCCAGATGAGATCACAGAAGCCCCCCATGTTACCAGCACAGAACTCATTCAAAAACCTAGGAGAGGCAGAAAACCGTCCACAAATCCAACTAAGAGGAAACGAGGCAAAGCCTCATCAGAGCAGATTCCTGGCAAGCCAATGAAAATCCACAAAAAGCCTGGGCCAAAACCTGGGATGAAAGACGCCATGGAGGTTATTGAGGCAGTAATAAGGGCTGCAGGATGTGAACGGGccaaaaaagaggagagagaaaaagaagaattggaaagaagggaaagagaaaagaaggaaaaccCAGAGACATCTATTGTGGGTCCTGTAGTAACAGTatcagaaaaacagacagagatCATTTCTGTGAAAAGAATTAGGCGCAAACCAGTCCATCAAAATTCTAAACTGTCTTTCTGTCCTTATGTACGGATTAACAACTCCAGAGACTTTTCCTCTTGGTGTGCCATAGTCAACAAGCCTGAGGATGCAGTAATATTTCAGAGACGTAGAAAAAAGGGCATACTCAGAATGAGGAATCCTTTCACAGTTGCAAAGGTAGTGCCACACACTGCTGCCATGTTACAGGGACCCTTGGTAAACAGAAATCTAACTGACAGGTGTCTAACATGTTGCCTGTGTGGAAAGCCAGCAAATTACAGAGACCTGGGTGATTTGTGCGGACCCTACTACACAGAGGATGGCGTTCCACGGAAAATGTTGACGATCGGGCACACAGAATCCCTCAGGGAAGAGTCACAGAAAACCAACGACAACAACAGTAGCAGCAGCGAAGAACCAAGCAACTCCTCAAAGAACGAGGGCGAGGGCAGCACAGAAAAGGAGAGCAATACAGAGGCGTCCACTCAAGAGGGCAGTAGTAGCAGGCACCATCATTGGCGCTACCGGCGggcagaaagaacagagagaataGGTCAGGACAGTGGTCCACGAAGATTAACTCTCCGAGAGAGGTTCAGGAGGATGAAGCAACTCCAGGCCATCAGCACAGGGGCTTCAAGTGACCAAGAGGGTGGTGACAGCATGTTCCAAAGGCTACAAGGGGAGGCAGAGGCTAAGGAGCACTGGGCCCATGAAAACTGTGCCATCTGGACCAAAGGGGTAATTATGGTAGCTGGGAGACTATACGGACTGAGGGAGGCTGCCAGCAACTCAGCCCAAACGAGCTGCTACAAGTGCCAGATTGTTGGGGCGTCCCTCAGTTGCTGTTGGAGAAGCTGCTCTCATAAATACCACTATGTCTGCGCCAAAGAGATAGGCTGCACATTCCACGAGGATGACTTCTCCATCAAATGTCCTAAACATgagGACCTGTAAGATATTTCAGTTCACCAATTCCACCACCAACACCACTTCTCAGCCAGGCAAGCACTGACTATCCAGCAAGGCAAACAAAGAAGCTGTCCTAACAGCCACCTATAACCTAAAAAACACGGTGATGACTGAAGACGGACAGGCACATCGGCCAGTGGGGGAGGGTGAAAATGCTGCGCTGAGGTGGTGCTGGGAGCAATACAAGCCCTGGAGAATGGCTCCGCAGAGAGTAGCTGCTCCCTGAACCCAACctggaaatgtgtttttccaaCTGAGCCCCTGACTGGAAGGCAGAAGGCAGCGGCACTGTTTAACAGGAGGATAGACTTCGCTTTAGAGACTGTGTGCCTAGAGCCCAGTGCACAGGGGGGCTGTTTGAAATGCAGAGCGAggaatgcgtgtgtgtgttctgcctTCGGATGGGTTGCTATCATAGTCAGACACCTGGTGGACACTGATTGGACAGGAGCATCCCTCTGGCCACCTTGTCTGTGGGCCAAGAAGTGTGTATGCGCGtacgtgtatgtatgtatgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtttgcgtgtgtgtgataATAATAACATTGTCATTCTACAGACACATCaacagtgtgtttgtgcattatttgtctgtgtgagtgAAGAAGTTCGTCTCCAATTCAAGATGTCATTGCATCGTAAAAGCAGCATCCACCATCTGGATGTACTATCTcaatgtgtgcgtttgtgtttaaaacaagagacaaaaatgaaacaaaaaaggaAACTGTACATGATGATGTGCTTTACAGGTTCTAGATATTCTGATACTgaagagtaaagaaaaaaatggatgCAGTATTTTAATATAATGCTCTTATCTTTGGAGATGTATTTTGATGTGCATTATGACTATACAACATCATTGCGTCATCCTTGGTAAATGTCAGGCTTTGTTGTAAttcagaaattaaaaaaaagaagaaaaaaaagatacctCTTTTTAAGAGGGTTACTTCAACTGTGTGCACATTCAATATGTACAGTAGACGCTGCCATCATCACTCGACAGGTTGCAGATCAGGGCTCCAAGGGTCCAACCGGGAGTCAGGTCATCTCACTTCATATCTGTGTACAGTTCAGAAGTATTACTGTTAAACATTGCCATAATGTATGATTATTTCATCTACCACAGCAATGCAGAAAGATGTACATTTAATTCAGATTTTATAACACACCTGTCTGTTCGTGTACCTCAAATGTAGCCTCTTTCACTCTTCCATGCTATGTAACAATGCCCTGTACAGGGTGTCAGTTTAAGTACTGGTCATATCAAAAGGAGACATATTTAAGTATTAGAGCATAAAATAAAGTGCAAAAATGCCACACCAAACGTTCTCTTTTATGAAGCTCATTATTTAATGGTGTATATAAGTATTTGATGCTGTTTAAATGTAAGATGTGATGTACTAATATAATTGTGTATAGTATTTCCTAGAGATGTTTATTTTCTATAAAATGGAATATGTTATTGCttataaaatgttattaaaagaatccattgatgaaaaaaaaatgaccttTTTTGGGAATGTCACTTGTTATAAGTTGGAGCATGccgttttattgattttcatgtCTTTGTTTGGAATCGATGACACAGCATCactttgtttgaaatgttttttgtaacGCCAATGTTAAATATACCAGCACCTTCCAATGCTGCTATGACCAA

Function

symbol description
rai1 Predicted to enable metal ion binding activity.

NR:

description
PREDICTED: retinoic acid-induced protein 1

GO: NA

KEGG:

id description
K19749 RAI1; retinoic acid-induced protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824675.1 True 8754 mRNA 0.49 6 11916104 11968837

Neighbor

gene id symbol gene type direction distance location
fam20ca LOC103361753,LOC100706308,LOC102196831,LOC101477115 coding upstream 10622 11869953 ~ 11905482 (+)
LOC120574840 NA coding upstream 129553 11783397 ~ 11786551 (+)
LOC120574416 NA coding upstream 278472 11635618 ~ 11637632 (+)
bri3 bri3 coding upstream 358376 11551967 ~ 11557728 (+)
lmtk2 lmtk2 coding upstream 383352 11502283 ~ 11532752 (+)
drc3 NA coding downstream 40001 12008838 ~ 12013380 (+)
gid4 gid4 coding downstream 45015 12013852 ~ 12019116 (+)
noxo1a NA coding downstream 54245 12023082 ~ 12027201 (+)
rnf151 rnf151,LOC102775723,LOC100708193 coding downstream 80488 12049325 ~ 12052232 (+)
rps2 rps2,LOC104918830 coding downstream 83890 12052727 ~ 12055182 (+)
G154186 NA non-coding upstream 88183 11827713 ~ 11827921 (+)
LOC120574841 NA non-coding upstream 220645 11691908 ~ 11695459 (+)
G154149 NA non-coding upstream 266183 11644156 ~ 11649921 (+)
G154124 LOC108239293,LOC104946078,LOC104918844,LOC101480216,LOC102194634,LOC100693182 non-coding upstream 414939 11498849 ~ 11501165 (+)
G154109 NA non-coding upstream 422455 11489906 ~ 11493649 (+)
G154204 NA non-coding downstream 6182 11975019 ~ 11975712 (+)
G154215 NA non-coding downstream 51441 12020278 ~ 12020508 (+)
G154225 LOC105933046,LOC101076874,LOC102218385,LOC106948144,LOC103469244,LOC103141651 non-coding downstream 95133 12063970 ~ 12064272 (+)
G154226 NA non-coding downstream 96443 12065280 ~ 12065508 (+)
G154227 NA non-coding downstream 98900 12067737 ~ 12068752 (+)
LOC120574068 NA other upstream 690855 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 842278 11063859 ~ 11073826 (+)
G153808 spag9 other upstream 1163206 10752160 ~ 10752898 (+)
G153646 NA other upstream 1574481 10250377 ~ 10341623 (+)
G153433 NA other upstream 1849362 10065460 ~ 10066742 (+)
G154254 NA other downstream 117024 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other downstream 120536 12089373 ~ 12093558 (+)
G154461 NA other downstream 874586 12843423 ~ 12846597 (+)
LOC120574968 LOC102294452 other downstream 1048122 13016959 ~ 13026416 (+)
vasnb vasn other downstream 1687178 13656015 ~ 13692303 (+)

Expression


Co-expression Network