LOC120574464 (LOC104918338,LOC103373486,LOC103393004,LOC106518679,LOC108241369,LOC103140983)


Basic Information

Item Value
gene id LOC120574464
gene name LOC104918338,LOC103373486,LOC103393004,LOC106518679,LOC108241369,LOC103140983
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14066786 ~ 14096876 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824743.1
TCCAAACCAAGCGTACCCAACGTGCTCTAAAACCAGCGTAGTGACATAACGTCTTTGTGTTGGCAAATCACGGTGAACGCTGGGCGGGCATTGTGAAGCTGTAGTTGAGTGTTAGCAGGCTAACTAGAGAAAGAAAGCTAACTAATCGTGAGAGTGGAAGTGGAGCTAACGTTAAAGGCAACTGTCAAAACAGCAAGGGGAGCAGTATTAGTGAAGTGATAATTCCGTTAGATGACTAGCTACATGAATAGATGTGTAGCTAGTTAATCAGAGACCGTGTTTGTCAGATGCCCGAGGAGCATTTTGGATACTACATCGATTGTCCCATTTCCAAACGGAAACCATTTCTGGACAAACAGttcgtagctagctagccagctagcTGAATCATCCAGGAGACTTTTCATTGTCACCTACAAACCCAAACTGAATGTTTTGTCTGTCATGAGTCCGGCCGGGTGCTCCCATGTGAACGGTTATAAAGTGGATAATTGGAAACAAAATCTTCGAGTCATATACCAATGCTTTGTTTGGAGTGGTACTGCTGAGACCAGGAGACGCAAGGTGCTTCAGAGTGATGCAGGATGGACAGAGCTGGCCAAGTCGTGTATCTGTCACATGTGTGGCGCCCACCTGAACAGACTCCACTCTTGTCTCTACTGCGTTTTTTTCGGCTGTTTTACGAAGAAACACATCCACGAGCACGCAAAAAACAAGAGACACAATCTAGCGATAGACTTATTATACGGGGGaatttattgttttgtgtgtcaaGACTACATATACGACAAAGACATGGAGCAGATTGCcaaagaggaacagaggaaaGCATGGAAATTGCAAGGCATAGGGGAGAAATACACAACATGGGAGCCGACCAAGAGGGAGCTAGAATTATTACGACACAATCCAAAGCGGAGGAAAATCACTACAAACTGTACCATAGGTTTACGAGGGTTAATAAACCTGGGCAACACATGTTTCATGAACTGTATTGTTCaggccctaacacacacaccgctgctTCGAGACTTCTTTCTCTCCGACAGACACAAGTGCGAGATGCAATCAAACTCCTGTCTGGTGTGTGAGATGTCGCAGCTCTTTCAGGAGTTCTACTCGGGCCACCGTTCACCTCACATTCCCTTCCGGCTGCTGCATCTGGTGTGGACTCATGCACGTCACCTCGCAGGCTACGAGCAGCAAGACGCCCACGAATTCCTCATCGCAGCGTTAGATGTACTACATAGGCACTGCAAAGGGGACACCATCAGAGATGACAATGGGAAGAAGGCCAACAATCCAAACCACTGTAACTGCATCATTGACCAAATCTTCACTGGGGGCCTGCAATCAGATGTTACCTGTCAAGTTTGccacGGGGTTTCCACGACGATAGATCCATTCTGGGACATCAGTCTGGACCTTCCTGGCTCATCGACTCCTTTCTGGCCCCTCAGCCCGGGAGGGGATGGCAGCACAGTCAATGGAGAGAGCCACCTGTCAGGGTCCACCACTCTCACAGACTGCCTACGCAGGTTTACGCGGCCAGAGCATCTAGGAAGCAGTGCCAAAATCAAGTGTGGCGGTTGCCATAGTTACCAGGAATCCACCAAACAGCTGACAATGAAGAAGCTCCCCATCGTAGCATGTTTCCATCTTAAACGGTTTGAGCACTCTGCCAAACTGCGGAGGAAGATCACTACATATGTTTCCTTCCCCCTAGAGTTGGACATGACGCCATTCATGGCATCCAGCAAAGAGAGCAGAATGAATGGGCAGTATCAACAGACGGTTGATGTATTAAACAACGACAATAAGTATTCCTTGTTTGCGGTGGTCAACCACCAAGGCACATTAGAGAGTGGCCACTACACCAGCTTCATCCGCCAGCACAAAGACCAGTGGTTCAAATGTGATGATGCCATAATCACCAAGGCCAGCATTAAGGATGTACTCGATAGTGAAGGGTATCTCTTATTCTACCATAAACAGTTCCTTGAGTATGAGTAG
>XM_039824744.1
ATGAGTCCGGCCGGGTGCTCCCATGTGAACGGTTATAAAGTGGATAATTGGAAACAAAATCTTCGAGTCATATACCAATGCTTTGTTTGGAGTGGTACTGCTGAGACCAGGAGACGCAAGGCCAAGTCGTGTATCTGTCACATGTGTGGCGCCCACCTGAACAGACTCCACTCTTGTCTCTACTGCGTTTTTTTCGGCTGTTTTACGAAGAAACACATCCACGAGCACGCAAAAAACAAGAGACACAATCTAGCGATAGACTTATTATACGGGGGaatttattgttttgtgtgtcaaGACTACATATACGACAAAGACATGGAGCAGATTGCcaaagaggaacagaggaaaGCATGGAAATTGCAAGGCATAGGGGAGAAATACACAACATGGGAGCCGACCAAGAGGGAGCTAGAATTATTACGACACAATCCAAAGCGGAGGAAAATCACTACAAACTGTACCATAGGTTTACGAGGGTTAATAAACCTGGGCAACACATGTTTCATGAACTGTATTGTTCaggccctaacacacacaccgctgctTCGAGACTTCTTTCTCTCCGACAGACACAAGTGCGAGATGCAATCAAACTCCTGTCTGGTGTGTGAGATGTCGCAGCTCTTTCAGGAGTTCTACTCGGGCCACCGTTCACCTCACATTCCCTTCCGGCTGCTGCATCTGGTGTGGACTCATGCACGTCACCTCGCAGGCTACGAGCAGCAAGACGCCCACGAATTCCTCATCGCAGCGTTAGATGTACTACATAGGCACTGCAAAGGGGACACCATCAGAGATGACAATGGGAAGAAGGCCAACAATCCAAACCACTGTAACTGCATCATTGACCAAATCTTCACTGGGGGCCTGCAATCAGATGTTACCTGTCAAGTTTGccacGGGGTTTCCACGACGATAGATCCATTCTGGGACATCAGTCTGGACCTTCCTGGCTCATCGACTCCTTTCTGGCCCCTCAGCCCGGGAGGGGATGGCAGCACAGTCAATGGAGAGAGCCACCTGTCAGGGTCCACCACTCTCACAGACTGCCTACGCAGGTTTACGCGGCCAGAGCATCTAGGAAGCAGTGCCAAAATCAAGTGTGGCGGTTGCCATAGTTACCAGGAATCCACCAAACAGCTGACAATGAAGAAGCTCCCCATCGTAGCATGTTTCCATCTTAAACGGTTTGAGCACTCTGCCAAACTGCGGAGGAAGATCACTACATATGTTTCCTTCCCCCTAGAGTTGGACATGACGCCATTCATGGCATCCAGCAAAGAGAGCAGAATGAATGGGCAGTATCAACAGACGGTTGATGTATTAAACAACGACAATAAGTATTCCTTGTTTGCGGTGGTCAACCACCAAGGCACATTAGAGAGTGGCCACTACACCAGCTTCATCCGCCAGCACAAAGACCAGTGGTTCAAATGTGATGATGCCATAATCACCAAGGCCAGCATTAAGGATGTACTCGATAGTGAAGGGTATCTCTTATTCTACCATAAACAGTTCCTTGAGTATGAGTAG

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 isoform X1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824743.1 True 2013 mRNA 0.48 14 14066786 14096876
XM_039824744.1 False 1536 mRNA 0.48 13 14067230 14096876

Neighbor

gene id symbol gene type direction distance location
LOC120574871 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 10943 14054552 ~ 14055843 (+)
LOC120574849 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 17349 14048086 ~ 14049437 (+)
LOC120575215 sox8 coding upstream 66110 13996902 ~ 14000676 (+)
LOC120575449 adap1,LOC103363436,LOC106518683,LOC108241370 coding upstream 182460 13867284 ~ 13884326 (+)
LOC120575450 rnps1,LOC104933647,LOC103363435 coding upstream 200230 13863511 ~ 13866556 (+)
LOC120575371 LOC104945238 coding downstream 331241 14428117 ~ 14429657 (+)
syngr2a LOC103373322 coding downstream 448778 14545654 ~ 14549374 (+)
cant1a NA coding downstream 456293 14553169 ~ 14558801 (+)
LOC120574730 NA coding downstream 461953 14558829 ~ 14562753 (+)
timp2b LOC103373294,LOC104925068 coding downstream 476524 14573400 ~ 14581660 (+)
G154777 NA non-coding upstream 9820 14049831 ~ 14056966 (+)
LOC120575454 NA non-coding upstream 112063 13946606 ~ 13954723 (+)
G154682 NA non-coding upstream 474152 13589517 ~ 13592634 (+)
G154661 LOC106942609 non-coding upstream 572925 13492585 ~ 13493861 (+)
G154639 NA non-coding upstream 582068 13484039 ~ 13484718 (+)
LOC120575155 NA non-coding downstream 10905 14107781 ~ 14241105 (+)
G154811 NA non-coding downstream 188298 14285174 ~ 14287984 (+)
G154824 NA non-coding downstream 229406 14326282 ~ 14326489 (+)
G154872 LOC104945235 non-coding downstream 340600 14437476 ~ 14439147 (+)
G154875 NA non-coding downstream 346216 14443092 ~ 14444138 (+)
G154743 LOC102293104 other upstream 212500 13847139 ~ 13854286 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other upstream 285101 13769019 ~ 13781685 (+)
trnat-agu_6 NA other upstream 297010 13769703 ~ 13769776 (+)
vasnb vasn other upstream 374483 13656015 ~ 13692303 (+)
LOC120574968 LOC102294452 other upstream 1040370 13016959 ~ 13026416 (+)
si:dkey-282h22.5 NA other downstream 884360 14981236 ~ 14984745 (+)
LOC120574428 NA other downstream 888824 14985700 ~ 14986913 (+)
LOC120575440 LOC102304323 other downstream 895137 14992013 ~ 14992508 (+)
G155088 NA other downstream 1038915 15135791 ~ 15139706 (+)
ndel1b ndel1,LOC104940291 other downstream 1270044 15366920 ~ 15404605 (+)

Expression


Co-expression Network