syngr2a (LOC103373322)


Basic Information

Item Value
gene id syngr2a
gene name LOC103373322
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14545654 ~ 14549374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825544.1
AACGCATCAGAGCAGGGGCGGTCTTTGAAAAGTTTTCAGGAAGCTGTTTGACAAAACGAAACTGTCCTAACTTTGACGGCAAGACTTTTCCAGCTCGTCTTTAAATTGTTTAACAGGCATTATTTTGGGTGAAAATGCAGAGCAGTGCTTACGGGGCGTCGTTGGCTGGCGGTGCTTTTGATTTAGTAAATTTTGTAACACAGCCTCAAACCATTTTGCGCTGCCTGAGCTGGTTATTCTCCGTTGTGGTCTTTGCAACCATCACAGCAGAAGGCTACGTGAACCCAACACAGGAGCCAGATACAAAATGCATATTCAACAAAAACGACAGCGCCTGTAGCTACGGGGTCGGAATTGGAGTCCTGGCCTTCTtggcttgtgttgtcttcctcaTGCTGGATGCCTACTTCCCGCAGATCAGCAATGCCAAAGAGAGAAAATGTATTGTTATAGGAGATTTGGTCTTCTCAGCGGCTTGGACGTTCCTGTGGTTCATCTGCTTCTGCGTCCTGGCCAACCAGTGGTCCAAAACCAGTGACCCGGAGGCTGCTGTCGCTCCTGATGCCGCCCGGGCCATCGTggccttctccttcttctcgaTCATCACCTGGGGTCTCTTGTCCTTCTTTGCACTTGGAAGGTATCGCCAAGGCGTCAGTGAATTTGACCAGGAGTACAGAGACCCAGCCAACGACCACAGTACTCCATACCCGCCCGCTCCCTACGCCAGCAGCAGCGGCCCCACGGGCTACCAGCAGTCGCCTTTCTCCCACAACCAGGAGCAGCCGGGAGAATACCAGCCTCCAGCTTATTGAAGGACTCCGATTCAAACCTATGGATCCAACAAGGGTTtcgctttttaaataaatatgtgtgCCGATGGTTTCATTTAAACGGTTCTCTGCACTCGCATTTACTTCCTGCAGAAGCGGTCAGCGTATTTTTGGGTGCACTGATGTGTTTATAGTTAATTACATTGTTGTAAGTTGTGTGGTGGATGTTTGCTGCGTTGTTCAAAGTGCCACACCGATCAGGTGAACTCTaaacatgtattttgttttgtaagGAGATGAATGACCGTGccattgttgtctttgtacCAAAGCAACTAAAGTTATTTCTGTACCCCTTTTGTTTATCTTATGAGTGCAAACGGTTGATGTCAAAGTAATCAACTAATCAACAGAACAggtcaggatttttttttatgtaatagGTTACTGTTTAgtacatacatattttttgATTACTTTCAGATCCATATACTGCAGTTCAACAATTTTTTGATACAGCACATTGTTTTTTGACCTCAAAACAATCCCATATTATTTAATCAATAGGTGCAATGTAACTACTGTAATGCCCTGTTTTTGTTTCTAACTAATCAACCACTGAAAAATGGCTTGTATGCACTGAAAAGCACAATTCATTTCTTTGGGGCAGTAAATTGCCAATATCTGATCTTAGAATgttaattttaatgttttaaatccaATTCTGCCACAAATTCTTTGTAGTATTAGTATTTAAGGGtattgagttttattttaagGTAGCCAAACCATCGATTTCTGTCAGCTACCTCCCATAGGAGTTGAATGTGCCTTTCTTGAGTTCACTTATTGTAGTTGTTAAAAATATCCAATTCAGCAAATGTTTCAGCCAATTTGGTTTCAGGAATTCAGTAATGTGGTAAATTGATGTATTTATTATCTTACTTAATCCTTTCAGTCCAGGTACATGACAatcatacaatttttttttttctacattactTTTTCCTCTTGCTTTTCTTACACTGTAGTTGTACCTGTGCATGTGTTGCAGTTACACTGTTGTGCTCAATGGCTTTACAACAATTCCCCATTAAAGTGCCTTTATACAGTATTCTGTATCACACAGGGGTTGCCAAATAAAAACTGTTCTTGTTTTGAA

Function

NR:

description
PREDICTED: synaptogyrin-2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825544.1 True 1935 mRNA 0.42 4 14545654 14549374

Neighbor

gene id symbol gene type direction distance location
LOC120575371 LOC104945238 coding upstream 115997 14428117 ~ 14429657 (+)
LOC120574464 LOC104918338,LOC103373486,LOC103393004,LOC106518679,LOC108241369,LOC103140983 coding upstream 448778 14066786 ~ 14096876 (+)
LOC120574871 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 489811 14054552 ~ 14055843 (+)
LOC120574849 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 496217 14048086 ~ 14049437 (+)
LOC120575215 sox8 coding upstream 544978 13996902 ~ 14000676 (+)
cant1a NA coding downstream 3795 14553169 ~ 14558801 (+)
LOC120574730 NA coding downstream 9455 14558829 ~ 14562753 (+)
timp2b LOC103373294,LOC104925068 coding downstream 24026 14573400 ~ 14581660 (+)
usp36 usp36 coding downstream 33229 14582603 ~ 14601556 (+)
cyth1a cyth1,LOC104962259,LOC103392816,LOC102194078,LOC100709795,LOC108277039,LOC104925066 coding downstream 53188 14602562 ~ 14647069 (+)
G154883 NA non-coding upstream 74667 14470512 ~ 14470987 (+)
G154881 NA non-coding upstream 82191 14463262 ~ 14463463 (+)
G154880 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 non-coding upstream 86501 14454839 ~ 14459153 (+)
G154875 NA non-coding upstream 101516 14443092 ~ 14444138 (+)
G154872 LOC104945235 non-coding upstream 106507 14437476 ~ 14439147 (+)
LOC120575161 NA non-coding downstream 181244 14730618 ~ 14738716 (+)
G154982 NA non-coding downstream 280128 14829502 ~ 14830164 (+)
G155032 LOC104944234,LOC102212559,LOC101473443,LOC102786862,LOC102303581 non-coding downstream 402959 14952333 ~ 14954301 (+)
G155036 ccdc137 non-coding downstream 418569 14967943 ~ 14969536 (+)
G155040 NA non-coding downstream 421878 14971252 ~ 14971468 (+)
G154743 LOC102293104 other upstream 691368 13847139 ~ 13854286 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other upstream 763969 13769019 ~ 13781685 (+)
trnat-agu_6 NA other upstream 775878 13769703 ~ 13769776 (+)
vasnb vasn other upstream 853351 13656015 ~ 13692303 (+)
LOC120574968 LOC102294452 other upstream 1519238 13016959 ~ 13026416 (+)
si:dkey-282h22.5 NA other downstream 431862 14981236 ~ 14984745 (+)
LOC120574428 NA other downstream 436326 14985700 ~ 14986913 (+)
LOC120575440 LOC102304323 other downstream 442639 14992013 ~ 14992508 (+)
G155088 NA other downstream 586417 15135791 ~ 15139706 (+)
ndel1b ndel1,LOC104940291 other downstream 817546 15366920 ~ 15404605 (+)

Expression


Co-expression Network