LOC120575371 (LOC104945238)


Basic Information

Item Value
gene id LOC120575371
gene name LOC104945238
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14428117 ~ 14429657 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826120.1
GGGTCCCAATAAAGACTGAAGTAGTGAGCGGCGACAACGGGAACCACCAGTCAGTCAGAGGCGCGCAGGACCAAACTTCAGTGCTCGACATGGAGATGCCCGCTAAACTCGTGTTCCCCGTCGTGGTGATCTCCGTGCTGGTGGCTTGCAGTCCGACGGAGGCTTGGTACAAGCAGGTGGCCGGCCCAAGCTACTACTCTGTGGGCAGGGCGTCCGGCTTGCTGTCCGGTAACCGGAGGTCACCGTACGTCAGGAGAGCCGAGCCGGACCCGTCAGACAGCGAAGAGCTGGCGACCAACAGCGCGTCTCCTGAATTCCCTCCGCGCAATTTCATCCTGAAGACGATGGCTGTTTGCATCAAAGACATTACACCAAACCTGCAGAGCTGTGAACTCTTCCAGGAAATCAAAGGTTCATTTAAGTGCCAAGCAGACGTCTTCCTCACTCTGGACTCTGCAGACTGTGCAGAAGACTGAGCAGTGAAGCAGACAGCTGGGCTGGATGATGGGggataaaaaaaactacatccCTAACTTTAACACCAAATGTTGCACTAGATGCAAGATATGCTACTTTTCATTTATCACTTCACCTGTTTATTCATTGATTTTGTGATGAACcaattttaaaaactaaagCTGTAAAAGTAGTGTGCTAAATGTACATACA

Function

NR:

description
PREDICTED: neuropeptide B-like

GO:

id name namespace
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826120.1 True 669 mRNA 0.51 2 14428117 14429657

Neighbor

gene id symbol gene type direction distance location
LOC120574464 LOC104918338,LOC103373486,LOC103393004,LOC106518679,LOC108241369,LOC103140983 coding upstream 331241 14066786 ~ 14096876 (+)
LOC120574871 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 372274 14054552 ~ 14055843 (+)
LOC120574849 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 378680 14048086 ~ 14049437 (+)
LOC120575215 sox8 coding upstream 427441 13996902 ~ 14000676 (+)
LOC120575449 adap1,LOC103363436,LOC106518683,LOC108241370 coding upstream 543791 13867284 ~ 13884326 (+)
syngr2a LOC103373322 coding downstream 115997 14545654 ~ 14549374 (+)
cant1a NA coding downstream 123512 14553169 ~ 14558801 (+)
LOC120574730 NA coding downstream 129172 14558829 ~ 14562753 (+)
timp2b LOC103373294,LOC104925068 coding downstream 143743 14573400 ~ 14581660 (+)
usp36 usp36 coding downstream 152946 14582603 ~ 14601556 (+)
G154824 NA non-coding upstream 101628 14326282 ~ 14326489 (+)
G154811 NA non-coding upstream 140133 14285174 ~ 14287984 (+)
LOC120575155 NA non-coding upstream 187012 14107781 ~ 14241105 (+)
G154777 NA non-coding upstream 371151 14049831 ~ 14056966 (+)
LOC120575454 NA non-coding upstream 473394 13946606 ~ 13954723 (+)
G154872 LOC104945235 non-coding downstream 7819 14437476 ~ 14439147 (+)
G154875 NA non-coding downstream 13435 14443092 ~ 14444138 (+)
G154880 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 non-coding downstream 25182 14454839 ~ 14459153 (+)
G154881 NA non-coding downstream 33605 14463262 ~ 14463463 (+)
G154883 NA non-coding downstream 40855 14470512 ~ 14470987 (+)
G154743 LOC102293104 other upstream 573831 13847139 ~ 13854286 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other upstream 646432 13769019 ~ 13781685 (+)
trnat-agu_6 NA other upstream 658341 13769703 ~ 13769776 (+)
vasnb vasn other upstream 735814 13656015 ~ 13692303 (+)
LOC120574968 LOC102294452 other upstream 1401701 13016959 ~ 13026416 (+)
si:dkey-282h22.5 NA other downstream 551579 14981236 ~ 14984745 (+)
LOC120574428 NA other downstream 556043 14985700 ~ 14986913 (+)
LOC120575440 LOC102304323 other downstream 562356 14992013 ~ 14992508 (+)
G155088 NA other downstream 706134 15135791 ~ 15139706 (+)
ndel1b ndel1,LOC104940291 other downstream 937263 15366920 ~ 15404605 (+)

Expression


Co-expression Network