G168515


Basic Information

Item Value
gene id G168515
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 24474533 ~ 24478300 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU228486
ATTGTTCTTTGTGTAataatctgtgttttttgtatctgtacCTATTCAAATacacaacaaataaataaataaaaattgctTTGTGTATTGTGTTCAATATCAGACTCTTTAATGTGAAACTGGCCTCATGTTAGCAGCAAATTCAAAGAATAGAGCTCTACCACCACTTACTGGTAAAATTACAGCAACAAATGCATGACGAAAGACAGCAAAGAAGACAGGAAATAAAGAAGATATCCAGAAAAGCTTGTGgcattttgaaacaaaatacTAATTATGATTTTTAACACTTTCCTAAACACAGCTGTCACAATTGATCACATATTACCTGAATTACTTCCCTCACTATAATTGAGAATAAGTGTGAATCCACCAGATACAGAGAGAATTTTGGAGTCTGCATTAAAACTTGGGTGATAGACTCTAACTGTATGTCTGAGAGAGAAGACAGTGACActattttttctgtatttcacaCTGACATCAGATGGTATTgcaaaaaaacaggaaacagaattGCAGTAGCACAATGTAATGCACAATTTGGCAGCCTTATTATAGAGTCTTAGCTCTTGTGCAATGAAGTCAACTGACTATTTTGAAGAAAATGCACTTATTGTTGATGTCTACTCTGTACTGTGTTTAatggataataaaaaaaaaaattaagcatCCTTTTACAGACTCAGTTATATATAGAGTTATTCAGATGGCTTTAAAACATTTGTTGAAGTCCTGCATCAGGCCAATGTTAATTTAAGAACATTTCCAACAGCCTTGGAGATTAGACAAGACTCAGTTACAGTGTACAGTACGACTTGACATTTGGACAACCTTCAAAAAAAGTTATCTGAAAATCAATATGAGCAACATGATAATGGTTTGGGCTACAgagctaaactatttaaaaaatggtATTCTCAAAATACtttaattggaattaaaaaaaCGGCCAAATGGCCAGAAATTAGTCAATTAGTGTAAGTGTATGTGGGAGTGCCTCAAAAACTAGATATGCAACTATGCCTGAAGCTGTGCAGACAAAACACAACTGCACATCATCCACATCTCAAACCCACGTGGCAGATGGAAGGATGGATGCTTTCATTTTTGTAGCAAAGGCAAAATGACTTGCAGCTAGTGTTAGCAGCCTCCCAATGCAATGATGCACATAGAAGTAATATGTGTCATGCAATttagtcagtggtggaatgtaactaagagCATTTACttacagtactgtacttaaatacaaatgggaggtactttacttgagtcttttcttttcatgccactttctacttctactccgctacatttcagaaagaaacttaattaatctgacagctttagttactagttactagttacaaaTCAAGATTTTTTATAAAATCtgtgtgatgttttattatacGTAAATTTAAATACCCAACAATATGACGGCTTAccagtacagctgaaatgattagcgattaaaggtgcagtaggtaagtttTATAatactaactttctgtcatagttgctgaaactgaccctatgttccagtagaactacatgaagcaggtaattaaaaaaaaataatctggctTCTCTGGCACCACCAGAGaatgatttgcaaaaatccacagctccctgttcagatgaaCCAATCAAGGCCAGGGGggggtgtcaatcactgctcatgcatatgcattcattcgtcccttgtggggggaggggcttaggagaccgttttgggctttagctgaaaggggggagggactgaggaagttgtcgatgttaaaatgttttggctaagtcatggatcttcacaatcctacctacggcacatttaaacacttagttgattgacagaactgttttgatcgttaacagtttctaaaatgcgaggatttttctgcattgagtacttttgatactttaagtacattttcctgatgatacttacatacttttacttaagtaacattttcaatgcaggacttttacttgtaacagagtatgcctacagtgtggtattagtacttttacttaagtaaaggatctaaatacatcttccaccactgaatTTAGTGCTTTTACCTTTATGACAATGAAGCCTCACTGGGAGTTAGAAACAGGGAGAACGTAGGCATATACATTTGCTCTTACACACACAGTGATGCAGCACTTCCTCACAGGAACAGGAAATGCAAAGTGGACCGATAAGTGTTGTCAGTTGGATGATAAGTTTCTGCAGCACTTCCAGCAGCTTTAGAACATAAGTAAAACCCTTGAGAGATCACAGATCGGCCTGTAAAAATTGCACCTCATTCATCTTTATTATACACGGTTGATGCATTTTGGCAGCTCGTGTTATCACACATTAATTGCCCTCAAAAGATTCAGAGGACACGTTAGGCATTGTATATTTTATTGGGTTATTATCTTCCCCTCTGCATGTCGCCCAAGTCAAAGTCTGATTTTCACAAGTGAAATTTCAAAGTCATGTTTCTGCATGTTGGCAGGGAAAGAACACTTCCGTcaagtttaaataaaacaatttattaaaataaatggaaGAAATGAGGCCAATACCTAAAGAGATGTGCAGTCTCATAAGAGGCTGGTCATCCCTTCAGTCTTGTAGATACGGATCATTTTCTCCAGTAGGATTTGCTCTtacacaagacgtgtgtaaAGCCATATATAATATGATAAGATACATTTGGCgtgcattttaatgttttcatttcTGGCAACAGATCATTATGAAACGCAGACCTCACATTTAGGTTGTTCTCAACATTTTTCATTACCTTATTGACCAAAAATGTTCATAACCTTATTAACCAACATTTTTTATAACCTCCGTATCCCTCTGGAAGCAAATTGcttcaaaacattttcaaaaacgGATAAAATGATACAAGAACACATAACAAAAAAACCAAATGATGGAATTTCAGAGCAGCTTTACCTGGCCTGACAATAACAATATGTTGCGTTATATATTTGGCTGAGATGAGTAGTGACAGTTCTATAAGCCTAGAAATAAAGAGACtgaaaaacttattttttcaaaaattggGGTTGGCTTTTTTGGCcaattaaatatattaacatACCTGAATTATTCAAACATCTCTATGAAGCCTTTGCTAGTTCATTAATTACACTTATTTGGACTCTCATGGGATAAAATGAATATTCCTGTtcattaaaacaataatttgtatGACAATAATGTAAGTGTGACAGTTAAACGGATAATACAACAACTAAGCATGTGTCTCTACTATTACCACTTTAACCACATTAAACTTCGTTCCTTTTCTATATACTCAAAAGTTTCACAAGAAAAGGGTTCCGAGCCCATTGCCGTGGTGTGGTAGAATCatagaaatgacaataaaataaaatgttatttctaTGGGTAGATTACCCTGTGGAGCAGGCTGGTCAGTCTGTGGAGTAACCCAGGATGGGTTATATTTGTAGACAAGTGACACCTCACTTGGGGTATTTGACAAACTGACACTCGGTGATACAGAGTGTCCAACTCAGCTTGTCAAATACACTAAGTGGGGGGCCTGATCTCGCAACATTAAAGATGGCTCTGTGGAATAAATGAACAAGACACTGGTAGCGGTCCAACCCAACATTATCAAAGAAAtcaaaaaaacatgcacacatttcCCATTTTTCATTAATATGTTGTCTTTGGTATACACAACATTTTAGAAAGTTGTTCCCAATCTGTTACCTGAGTGATCAGTTCTGTTGAAG

Function

GO: NA

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU228486 True 3768 lncRNA 0.36 1 24474533 24478300

Neighbor

gene id symbol gene type direction distance location
brwd3 brwd3 coding downstream 119325 24336109 ~ 24355208 (-)
LOC120544447 chmp1b,LOC101476317,LOC104940072 coding downstream 148238 24322805 ~ 24326295 (-)
rraga LOC103366304,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC103395326,LOC105927798,LOC105906309,LOC108268916 coding downstream 153768 24316861 ~ 24320765 (-)
LOC120543697 NA coding downstream 191848 24260471 ~ 24282685 (-)
itpkca LOC104945492,LOC103366301 coding downstream 221140 24248166 ~ 24253393 (-)
LOC120575630 NA coding upstream 346 24478646 ~ 24479620 (-)
LOC120544004 ophn1 coding upstream 47248 24525548 ~ 24551483 (-)
tbc1d8b tbc1d8b coding upstream 93294 24571594 ~ 24587556 (-)
LOC120575671 NA coding upstream 436913 24915213 ~ 24919115 (-)
LOC120575606 NA coding upstream 441975 24920275 ~ 24924301 (-)
G168504 msn,LOC107103672,LOC106955558,LOC101079839,LOC102221775 non-coding downstream 4418 24466751 ~ 24470115 (-)
G168505 NA non-coding downstream 34365 24439481 ~ 24440168 (-)
G168499 LOC103370920,LOC104934356,LOC104946956 non-coding downstream 46341 24423526 ~ 24428192 (-)
G168490 NA non-coding downstream 64231 24410033 ~ 24410302 (-)
G168452 LOC104945802,LOC106516412 non-coding downstream 144378 24329509 ~ 24330155 (-)
G168561 NA non-coding upstream 127912 24606212 ~ 24607162 (-)
G168570 NA non-coding upstream 150099 24628399 ~ 24633340 (-)
G168657 NA non-coding upstream 679223 25157523 ~ 25168232 (-)
G168713 NA non-coding upstream 820277 25298577 ~ 25310102 (-)
LOC120544369 NA non-coding upstream 1040169 25518469 ~ 25619997 (-)
radx LOC103366308,LOC106923634,LOC103133962,LOC106955728 other downstream 68656 24395776 ~ 24405877 (-)
LOC120544713 LOC104954531 other downstream 498212 23974554 ~ 23976321 (-)
thoc2 thoc2,LOC102794734 other downstream 525673 23920564 ~ 23948860 (-)
nlgn3b nlgn3b,LOC103367236,LOC101487455,LOC104954573 other downstream 662585 23796218 ~ 23811948 (-)
G168162 NA other downstream 856412 23617275 ~ 23618121 (-)
LOC120543987 NA other upstream 12260 24490560 ~ 24496582 (-)
LOC120544362 msi2,LOC103475888 other upstream 177503 24655803 ~ 24904853 (-)
pcdh1a LOC103357738,LOC108233889,LOC101479736,LOC102299879 other upstream 1145435 25623735 ~ 25723218 (-)
vamp2 vamp2,mpp1,LOC103367795,LOC104941032,LOC107742350,LOC107720682,LOC107082578,LOC107386619 other upstream 1746519 26224819 ~ 26236194 (-)
ammecr1 ammecr1 other upstream 2096629 26574929 ~ 26612717 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G94369 NA non-coding NC_048565.1 CM023219.2 83785368 ~ 83785715 (-)
rainbow trout (Oncorhynchus mykiss) LOC110537289 NA misc NC_048576.1 CM023230.2 26895765 ~ 26896913 (-)
bowfin (Amia calva) AMCG00021076 NA misc CM030130.1 CM030130.1 2209482 ~ 2230147 (+)