rraga (LOC103366304,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC103395326,LOC105927798,LOC105906309,LOC108268916)


Basic Information

Item Value
gene id rraga
gene name LOC103366304,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC103395326,LOC105927798,LOC105906309,LOC108268916
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 24316861 ~ 24320765 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777261.1
GTCTTCTCATGTGACTCTGgcgtaaacaggaagcagctgaTCTTGACTTCACTGCTGCTTCTACCAGTAATGTAACGTTATAGAACTGTattcttaaaaacaaatacaaaatataggCTAAAATTGCTTGAATTCGAGTAACCGTTCTACCTTGTCGCTCTGAACGAGAGCTGCTGCTTACACTAAATAAAGTCACCTGACTTGCAGCGCAGAGAAATACTCTACATCGTGTCTGCTGAGGGGGATGTCAAGCACAGCAATGAAGAAAAAGGTGTTACTGATGGGGAAAAGCGGGTCTGGGAAGACCAGTATGAGATCAATCATCTTTGCCAATTACATAGCTCGAGACACACGCCGCCTCGGAGCTACAATTGACGTAGAGCACTCCCATGTACGGTTTCTTGGCAATCTGGTTCTAAACCTGTGGGACTGTGGAGGACAGGACACGTTTATGGAGAACTACTTCACCAGCCAGAGGGACAACATTTTCAGAAATGTAGAAGTGCTTATTTATGTATTTGACGTTGAGAGCCGTGAGCTGGAGAAAGACATGCACTACTACCAGTCTTGTCTGGAGGCCATCCTGCAGAACTCCCCCGACGCTAAAGTGTTCTGCCTCGTTCACAAAATGGATCTGGTGCAGGAAGATCAGAGAGATTTGATCTTTAAGGAGCGTGAAGAAGATCTGAAGAGACTGTCCAGACCTTTGGCTTGCACGTGCTTCAGGACATCAATCTGGGACGAAACCCTGTATAAGGCCTGGTCTAGCATAGTGTACCAGCTCATCCCAAACGTCCAGCAGCTGGAGACGAACCTGAGAAATTTTGCGCAGATCATAGAGGCAGATGAAGTTCTTCTGTTTGAGAGAGCCACCTTCCTGGTGATCTCCCACTATCAGTGCAAAGAGCAGCGCGATGCTCACCGGTTTGAAAAGATCAGTAACATTATCAAACAGTTCAAACTCAGCTGTAGTAAACTTGCAGCCTCTTTCCAAAGCATGGAAGTGAGGAACTCCAACTTTGCGGCCTTCATTGACGTCTTCACCTCCAACACATATGTCATGGTCATCATGTCGGACCCCTCCATTCcATCTGCAGCAACTCTCATCAATATCCGTAATGCTAGGAAACACTTTGAGAAGTTGGAGCGGGTGGATGGACCCAAGCACAGCCTGCACATGCGAATGCGCTAGCCGGTGCATTTGTTCCAGTGGATACTCTCAGCCAATCAGTCCACAGACCGCAGCTGGCATGTTGCGGTCTTCCAGCTCCGAAACGTATGAGCAGCACTGTTTCCTCTATATCTTCACATTCAATCAcagttattacagttattataGAAATCATATTTTCTTTCTAATTTCTACAGTGATCATAGGTATCTTGAACAGCGATACATTCTGTTGGAATATTTGCCCTAACTCAACGTAATAAAGTAAAATGAATAGTTGTGTTTACTATGAAGGGGGCTACCTTTGCTGTCACACTTTGTCATATACAGTAGATTTGTTCACTCCATGCAGTGGACCCCAGTTGTCTGGGGTTGTTGTCTCCAAATGATAAGCAGCAGATTTGCAGTTTGTAAGCTGTTACACTTTTAAAGTACGAACAATATAGTTATattcagaaaaataaatgtgcCGTGTTTTTTCTGCTTCAA
>XM_039777262.1
CTAAGAACGGAGCGGAATCTGTTGGCGAGAAAACCCCCTTCGTCTTCTCATGTGACTCTGgcgtaaacaggaagcagctgaTCTTGACTTCACTGCTGCTTCTACCACTGAACGAGAGCTGCTGCTTACACTAAATAAAGTCACCTGACTTGCAGCGCAGAGAAATACTCTACATCGTGTCTGCTGAGGGGGATGTCAAGCACAGCAATGAAGAAAAAGGTGTTACTGATGGGGAAAAGCGGGTCTGGGAAGACCAGTATGAGATCAATCATCTTTGCCAATTACATAGCTCGAGACACACGCCGCCTCGGAGCTACAATTGACGTAGAGCACTCCCATGTACGGTTTCTTGGCAATCTGGTTCTAAACCTGTGGGACTGTGGAGGACAGGACACGTTTATGGAGAACTACTTCACCAGCCAGAGGGACAACATTTTCAGAAATGTAGAAGTGCTTATTTATGTATTTGACGTTGAGAGCCGTGAGCTGGAGAAAGACATGCACTACTACCAGTCTTGTCTGGAGGCCATCCTGCAGAACTCCCCCGACGCTAAAGTGTTCTGCCTCGTTCACAAAATGGATCTGGTGCAGGAAGATCAGAGAGATTTGATCTTTAAGGAGCGTGAAGAAGATCTGAAGAGACTGTCCAGACCTTTGGCTTGCACGTGCTTCAGGACATCAATCTGGGACGAAACCCTGTATAAGGCCTGGTCTAGCATAGTGTACCAGCTCATCCCAAACGTCCAGCAGCTGGAGACGAACCTGAGAAATTTTGCGCAGATCATAGAGGCAGATGAAGTTCTTCTGTTTGAGAGAGCCACCTTCCTGGTGATCTCCCACTATCAGTGCAAAGAGCAGCGCGATGCTCACCGGTTTGAAAAGATCAGTAACATTATCAAACAGTTCAAACTCAGCTGTAGTAAACTTGCAGCCTCTTTCCAAAGCATGGAAGTGAGGAACTCCAACTTTGCGGCCTTCATTGACGTCTTCACCTCCAACACATATGTCATGGTCATCATGTCGGACCCCTCCATTCcATCTGCAGCAACTCTCATCAATATCCGTAATGCTAGGAAACACTTTGAGAAGTTGGAGCGGGTGGATGGACCCAAGCACAGCCTGCACATGCGAATGCGCTAGCCGGTGCATTTGTTCCAGTGGATACTCTCAGCCAATCAGTCCACAGACCGCAGCTGGCATGTTGCGGTCTTCCAGCTCCGAAACGTATGAGCAGCACTGTTTCCTCTATATCTTCACATTCAATCAcagttattacagttattataGAAATCATATTTTCTTTCTAATTTCTACAGTGATCATAGGTATCTTGAACAGCGATACATTCTGTTGGAATATTTGCCCTAACTCAACGTAATAAAGTAAAATGAATAGTTGTGTTTACTATGAAGGGGGCTACCTTTGCTGTCACACTTTGTCATATACAGTAGATTTGTTCACTCCATGCAGTGGACCCCAGTTGTCTGGGGTTGTTGTCTCCAAATGATAAGCAGCAGATTTGCAGTTTGTAAGCTGTTACACTTTTAAAGTACGAACAATATAGTTATattcagaaaaataaatgtgcCGTGTTTTTTCTGCTTCAA
>XM_039777263.1
AACCCCCTTCGTCTTCTCATGTGACTCTGgcgtaaacaggaagcagctgaTCTTGACTTCACTGCTGCTTCTACCAGTAATCTGAACGAGAGCTGCTGCTTACACTAAATAAAGTCACCTGACTTGCAGCGCAGAGAAATACTCTACATCGTGTCTGCTGAGGGGGATGTCAAGCACAGCAATGAAGAAAAAGGTGTTACTGATGGGGAAAAGCGGGTCTGGGAAGACCAGTATGAGATCAATCATCTTTGCCAATTACATAGCTCGAGACACACGCCGCCTCGGAGCTACAATTGACGTAGAGCACTCCCATGTACGGTTTCTTGGCAATCTGGTTCTAAACCTGTGGGACTGTGGAGGACAGGACACGTTTATGGAGAACTACTTCACCAGCCAGAGGGACAACATTTTCAGAAATGTAGAAGTGCTTATTTATGTATTTGACGTTGAGAGCCGTGAGCTGGAGAAAGACATGCACTACTACCAGTCTTGTCTGGAGGCCATCCTGCAGAACTCCCCCGACGCTAAAGTGTTCTGCCTCGTTCACAAAATGGATCTGGTGCAGGAAGATCAGAGAGATTTGATCTTTAAGGAGCGTGAAGAAGATCTGAAGAGACTGTCCAGACCTTTGGCTTGCACGTGCTTCAGGACATCAATCTGGGACGAAACCCTGTATAAGGCCTGGTCTAGCATAGTGTACCAGCTCATCCCAAACGTCCAGCAGCTGGAGACGAACCTGAGAAATTTTGCGCAGATCATAGAGGCAGATGAAGTTCTTCTGTTTGAGAGAGCCACCTTCCTGGTGATCTCCCACTATCAGTGCAAAGAGCAGCGCGATGCTCACCGGTTTGAAAAGATCAGTAACATTATCAAACAGTTCAAACTCAGCTGTAGTAAACTTGCAGCCTCTTTCCAAAGCATGGAAGTGAGGAACTCCAACTTTGCGGCCTTCATTGACGTCTTCACCTCCAACACATATGTCATGGTCATCATGTCGGACCCCTCCATTCcATCTGCAGCAACTCTCATCAATATCCGTAATGCTAGGAAACACTTTGAGAAGTTGGAGCGGGTGGATGGACCCAAGCACAGCCTGCACATGCGAATGCGCTAGCCGGTGCATTTGTTCCAGTGGATACTCTCAGCCAATCAGTCCACAGACCGCAGCTGGCATGTTGCGGTCTTCCAGCTCCGAAACGTATGAGCAGCACTGTTTCCTCTATATCTTCACATTCAATCAcagttattacagttattataGAAATCATATTTTCTTTCTAATTTCTACAGTGATCATAGGTATCTTGAACAGCGATACATTCTGTTGGAATATTTGCCCTAACTCAACGTAATAAAGTAAAATGAATAGTTGTGTTTACTATGAAGGGGGCTACCTTTGCTGTCACACTTTGTCATATACAGTAGATTTGTTCACTCCATGCAGTGGACCCCAGTTGTCTGGGGTTGTTGTCTCCAAATGATAAGCAGCAGATTTGCAGTTTGTAAGCTGTTACACTTTTAAAGTACGAACAATATAGTTATattcagaaaaataaatgtgcCGTGTTTTTTCTGCTTCAA

Function

NR:

description
ras-related GTP-binding protein A

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16185 RRAGA_B; Ras-related GTP-binding protein A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777261.1 True 1659 mRNA 0.45 10 24316861 24320724
XM_039777262.1 False 1607 mRNA 0.46 10 24316861 24320765
XM_039777263.1 False 1581 mRNA 0.45 10 24316861 24320734

Neighbor

gene id symbol gene type direction distance location
LOC120543697 NA coding downstream 34176 24260471 ~ 24282685 (-)
itpkca LOC104945492,LOC103366301 coding downstream 63468 24248166 ~ 24253393 (-)
LOC120543885 LOC104945491,LOC103366299,LOC102294637,LOC100690145,LOC102799205 coding downstream 70710 24244120 ~ 24246151 (-)
rtn2b LOC104919712,LOC103363280 coding downstream 81188 24225198 ~ 24235673 (-)
LOC120575599 LOC104919715,LOC106919074,LOC103363277 coding downstream 138868 24175178 ~ 24177993 (-)
LOC120544447 chmp1b,LOC101476317,LOC104940072 coding upstream 2040 24322805 ~ 24326295 (-)
brwd3 brwd3 coding upstream 15344 24336109 ~ 24355208 (-)
LOC120575630 NA coding upstream 157881 24478646 ~ 24479620 (-)
LOC120544004 ophn1 coding upstream 204783 24525548 ~ 24551483 (-)
tbc1d8b tbc1d8b coding upstream 250829 24571594 ~ 24587556 (-)
G168365 NA non-coding downstream 142760 24173826 ~ 24174101 (-)
G168351 pafah1b2,LOC108247589 non-coding downstream 208372 24105582 ~ 24108489 (-)
G168238 NA non-coding downstream 552722 23763547 ~ 23764139 (-)
G168161 NA non-coding downstream 710556 23605559 ~ 23606305 (-)
G168041 LOC103372846 non-coding downstream 991524 23323498 ~ 23325337 (-)
G168431 NA non-coding upstream 5666 24326431 ~ 24327158 (-)
G168452 LOC104945802,LOC106516412 non-coding upstream 8744 24329509 ~ 24330155 (-)
G168490 NA non-coding upstream 89268 24410033 ~ 24410302 (-)
G168499 LOC103370920,LOC104934356,LOC104946956 non-coding upstream 102761 24423526 ~ 24428192 (-)
G168505 NA non-coding upstream 118716 24439481 ~ 24440168 (-)
LOC120544713 LOC104954531 other downstream 340540 23974554 ~ 23976321 (-)
thoc2 thoc2,LOC102794734 other downstream 368001 23920564 ~ 23948860 (-)
nlgn3b nlgn3b,LOC103367236,LOC101487455,LOC104954573 other downstream 504913 23796218 ~ 23811948 (-)
G168162 NA other downstream 698740 23617275 ~ 23618121 (-)
rnf167 rnf167,LOC102777964,LOC102289272,LOC101483611 other downstream 712969 23596899 ~ 23603892 (-)
radx LOC103366308,LOC106923634,LOC103133962,LOC106955728 other upstream 75011 24395776 ~ 24405877 (-)
LOC120543987 NA other upstream 169795 24490560 ~ 24496582 (-)
LOC120544362 msi2,LOC103475888 other upstream 335038 24655803 ~ 24904853 (-)
pcdh1a LOC103357738,LOC108233889,LOC101479736,LOC102299879 other upstream 1302970 25623735 ~ 25723218 (-)
vamp2 vamp2,mpp1,LOC103367795,LOC104941032,LOC107742350,LOC107720682,LOC107082578,LOC107386619 other upstream 1904054 26224819 ~ 26236194 (-)

Expression


Co-expression Network