LOC120544198 (vmp1)


Basic Information

Item Value
gene id LOC120544198
gene name vmp1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28881734 ~ 28942332 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU229970
GCTGAGCACTCCTACCCTACGGCTCTGTCCTCTAAACTCAACAACAACCTTTGTCTCTAaagTATGTGCGCTACATGGAGAAGAAGACGCTGTGGTGTGCCTACTGGGTCGGCCTAGGCATCCTCTCCTCGGTGGGTCTTGGTACCGGCCTGCACACCTTCCTTCTTTACCTGGGTGAAAAGGCCTCTGAAACTGGCAGACCTTAATCTCTTGATGGCAATCCAACTTGTCCACAc
>XM_039777811.1
CCTGCTCTCCCCTCCCCCGGCAACGCTGTATCAGTACTCGATCCCTGACTGGCCCCCTCCATCACCACACCCTGCACTCAAGTTATGATGCAGTTCATGGGTAGCGTACATTTGCCCTACATTGCCACTGGGGCTCCACCACAGGTTTTATTTGAGCCCAGAGATTATTGGGAATTAAACAGCTGTGAACGACTCCTTCCTGGTGAATGAGATGGCAGAGTGTGGGGCTGAAGGTGAACTACCTCAGAGGCGACTTGGTGTCAAGGAACAGCAAAACGGAGAGCTGACtgACTCAGAGCTGTCCGTGGATGAGAGGAAACAGAGGGACAGTGAGGAGCGTGAGACTCTGGTAATATGGAAGAAACCTCAGCTCACACTCCACTACTTCACTCTGGAACTGCTCATCACCCTTAAAGAGTGGCTATGGAGGCTCTGGCAGCAAAGACAGACTGTGTTTGGCCTGCTGATCCTGCTTATCCTCCTCTCCATTGCCTACTGTATTGAAGGAACACACCAGAAGTATGTGCGCTACATGGAGAAGAAGACGCTGTGGTGTGCCTACTGGGTCGGCCTAGGCATCCTCTCCTCGGTGGGTCTTGGTACCGGCCTGCACACCTTCCTTCTTTACCTGGGACCACACATAGCATCAGTGACCTTGGCCGCCTATGAATGTGGCTCTGTGGATTTCCCCGAACCGCCTTATCCAGACCAAATAGTCTGTCCCCAGCAGAACGCACCAGACTCTGATGCTGAGCAGGTGGGCGTGGAGGCTGCAACAGCGGTGGGTTCAGCTGCCATCCATGGAAGCATCTCTCTCTGGACCATCATCTCCAAAGTCCGCCTGGAAGCTTGTATGTGGGGTGCAGGTACAGCTATAGGAGAGCTTCCTCCCTACTTCATGGCACGGGCGGCGAGGCTGTCCGGGGCCGACCCCGACGACGAGAACTACCAGAAGTTTGAGGAGATTCTGGACCAGACCCAGTCAGCCCAGGACTTTGCCACCCGAGCAAAAGTAGCAGTGCAGAAACTCATCCAGAGGGTCGGATTCTTTGGGATTTTGGCGTGTGCTTCAATTCCTAATCCCTTGTTTGACCTGGCAGGAATAACATGTGGACATTTTTTAGTCCCCTTCTGGACTTTTTTTGGTGCAACGCTCATTGGGAAAGCCGTCATTAAAATGCACATTCAGAAACTGTTTGTGATCGTCACCTTCAGCAGGCACATAGTGGAGCAGATGGTCTCCCTCATTGGGAGCACCCTCCCTCTGTGGGCCATCCCCCCAGATCTCAGCCAGTGATGACACAGTTTGGGTACGACTCACTTCCTCATTAATTGGCTGAAACCAGTTCTTACAGGAACCGCCTGTGATAAATGTGAGAGTTCTGAGAAGTCATTCATTTCTCCTCACTGCAGCGGCAGAGGAGGCACTGCAGGGGAGTTGAACGAGTTCACcgatgtgtgtgagagagggagaggaagccgagtgtgtgtgtgtgtgtgtgtgtgtgaggagaacAGCCGAGCAGAGCAGAGCGGGAGAATGTGGGTGACTACTGCTGCTGCGGCTGCTGTATGAGGACCAGCCAACTTTATTTATGCCTATTTTGATCGTCTTTtgacttttttagtttttcagcaCCACTATTTTCTAAAGCTGTGGTACAGTCTGTACTTTTTTTccgtgtgtttgtttatgtgtgtatctgtggggATGAGCAGTGAA

Function

symbol description
vmp1 Acts upstream of or within autophagy and lipoprotein transport. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment membrane; plasma membrane; and vacuolar membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in several structures, including EVL; digestive system; intestinal bulb primordium; nervous system; and optic vesicle. Orthologous to human VMP1 (vacuole membrane protein 1).

NR:

description
PREDICTED: vacuole membrane protein 1

GO: NA

KEGG:

id description
K21248 VMP1; vacuole membrane protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU229970 False 236 lncRNA 0.53 3 28890737 28892320
XM_039777811.1 True 1723 mRNA 0.52 11 28881734 28942332

Neighbor

gene id symbol gene type direction distance location
cltca cltc coding upstream 7565 28830951 ~ 28874169 (+)
spns2 spns2 coding upstream 131198 28689558 ~ 28750536 (+)
spns3 NA coding upstream 204554 28670127 ~ 28677180 (+)
LOC120575697 LOC103372553,LOC104967633 coding upstream 245217 28633009 ~ 28636517 (+)
p2rx1 p2rx1 coding upstream 486284 28374490 ~ 28395450 (+)
rps6kb1a rps6kb1,LOC103359476,LOC103395203 coding downstream 10883 28953215 ~ 28971259 (+)
med13a med13 coding downstream 78842 29021174 ~ 29122883 (+)
ints2 ints2 coding downstream 182034 29124366 ~ 29149786 (+)
auts2a auts2 coding downstream 375210 29317542 ~ 29683489 (+)
atg101 atg101 coding downstream 959869 29902201 ~ 29903666 (+)
G169564 NA non-coding upstream 71905 28809602 ~ 28809829 (+)
G169561 atp5l,LOC102215954,LOC102793421,LOC100709019 non-coding upstream 73055 28804383 ~ 28808679 (+)
G169540 NA non-coding upstream 103069 28774831 ~ 28778665 (+)
G169536 NA non-coding upstream 122484 28758136 ~ 28759250 (+)
G169534 NA non-coding upstream 128979 28751798 ~ 28752755 (+)
G169594 NA non-coding downstream 330 28942662 ~ 28944321 (+)
G169595 NA non-coding downstream 3978 28946310 ~ 28946657 (+)
G169605 NA non-coding downstream 57127 28999459 ~ 28999690 (+)
G169606 NA non-coding downstream 207543 29149875 ~ 29169727 (+)
G169694 NA non-coding downstream 362946 29305278 ~ 29305492 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other upstream 78849 28796512 ~ 28802885 (+)
shpk shpk,LOC102781293 other upstream 1350419 27520031 ~ 27531315 (+)
G169042 stip1 other upstream 1916694 26962206 ~ 26965040 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 2194471 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 2205939 26659358 ~ 26675795 (+)
G169789 map6 other downstream 1003542 29945874 ~ 29971107 (+)
uvrag uvrag other downstream 1069001 30011333 ~ 30113690 (+)
G169814 NA other downstream 1186200 30128532 ~ 30128932 (+)
pcp4a NA other downstream 1532119 30474451 ~ 30502597 (+)
G170156 NA other downstream 2243605 31185937 ~ 31218284 (+)

Expression


Co-expression Network