pcp4a


Basic Information

Item Value
gene id pcp4a
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30474451 ~ 30502597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU230485
TGGAGAGGAGAGCGCCGGTATAAAAGCAGAGTGAGAGCAGAGCGgctcggagagagagagagagagagagagaggactgtAGCCTTCCTTCAGTCACagcacagagatacacacagcgCAGCCATGAGTGAGAGACAAGCATCTGGAGCAACGACTGGAAACAGCAAACCATCTGCTGGCCAAGATGAGAAGAACAAGAACAACCTCCCCGAGGACTTTGACATCGACATGGAAAACCCGGAGACGGAGAAGGCCGCTGTCGCCATCCAGTCGCAGTTCAGGAAATTCCAGAAAAAGAAGCAGGATGTGAAGTCATAGAGCGGGCGCTGTCAGCTGCCTCGTCACTTGATGTGGGCCTGGTCTTGCATGTCATCAAACTGCACCGCCATGAACTGAAAAGTAAGGGTGGGGGTAGGGGGGCGGGGTGGTCTGGAGCTAAATAGTATCTTTGTGAAAGTCTGTGTGTAATTACTAACTTATAATGATATATACAAAAAGAATACATTATCAAATGAtgggtgtactgtatgtatttaaatctGTCATCTATCATTTAGCTGGTTCTGTTTTTTACTTCAATGACACTTGTGTAGCTGCAGTAGAGCTTTAAGTTTTAATAGTTTTTCTTATGTCACAATCAGTGTATTATACCCATGTAAAGTTAACAGCAAACTAAAAGAAGTCTTCTCATAAATTGTCAAAAACTGATTATCTTTAATTCAGGGGGAATATAAAGCCACATGCATTGCTGTGATTGCTTGGGTCATGATTTCATGGACAGTCTTAGCAAGGCGTCATAATCAAACGATATTGCAGCTCTACTGGAGCTCCGTTAATGGCATTTCCCTCTGGCTGGGTAAAATGATCCCACACAGTCGCCAGTGCTTTTACGCCGTATGACTGATGcttttaaaatcaaatcaatgTCTAATTTGTATTGGGTCTCCCCTCCATCACTTCTGTTCACCTGATGACATGAACCTCTCTGAGCTGTCAGCTTTCTAGAGAATGTAGATGTTGTGCTTGTGATTTGATTCCAATTGTGTCTATTTCCTTGTTCTTGTGATTTTAACAATCACTGTTCAGTTGGCTCACACTTGTTAACtgtacaagcacacacacttatgcatgcaagcatacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcataaataaataataacattGTAAAGGAGTGCAAGTTGATTTACTTTCTACAAAATTGTTCCAGTTAGTGGATGCGACTGAAATGGGTCCTATTGTCCATTACTGAACACAGTATGTGCAGCATGTGAAGTAGATCATAATAAAATGGATTTATTAACATCTA
>TU230486
TGGAGAGGAGAGCGCCGGTATAAAAGCAGAGTGAGAGCAGAGCGgctcggagagagagagagagagagagagaggactgtAGCCTTCCTTCAGTCACagcacagagatacacacagcgCAGCCATGAGTGAGAGACAAGCATCTGGAGCAACGACTGGAAACAGCAAACCATCTGCTGGCCAAGGTCAACAAAAGGTTCCATCTAAACATGAGAAGAACAAGAACAACCTCCCCGAGGACTTTGACATCGACATGGAAAACCCGGAGACGGAGAAGGCCGCTGTCGCCATCCAGTCGCAGTTCAGGAAATTCCAGAAAAAGAAGCAGGATGTGAAGTCATAGAGCGGGCGCTGTCAGCTGCCTCGTCACTTGATGTGGGCCTGGTCTTGCATGTCATCAAACTGCACCGCCATGAACTGAAAAGTAAGGGTGGGGGTAGGGGGGCGGGGTGGTCTGGAGCTAAATAGTATCTTTGTGAAAGTCTGTGTGTAATTACTAACTTATAATGATATATACAAAAAGAATACATTATCAAATGAtgggtgtactgtatgtatttaaatctGTCATCTATCATTTAGCTGGTTCTGTTTTTTACTTCAATGACACTTGTGTAGCTGCAGTAGAGCTTTAAGTTTTAATAGTTTTTCTTATGTCACAATCAGTGTATTATACCCATGTAAAGTTAACAGCAAACTAAAAGAAGTCTTCTCATAAATTGTCAAAAACTGATTATCTTTAATTCAGGGGGAATATAAAGCCACATGCATTGCTGTGATTGCTTGGGTCATGATTTCATGGACAGTCTTAGCAAGGCGTCATAATCAAACGATATTGCAGCTCTACTGGAGCTCCGTTAATGGCATTTCCCTCTGGCTGGGTAAAATGATCCCACACAGTCGCCAGTGCTTTTACGCCGTATGACTGATGcttttaaaatcaaatcaatgTCTAATTTGTATTGGGTCTCCCCTCCATCACTTCTGTTCACCTGATGACATGAACCTCTCTGAGCTGTCAGCTTTCTAGAGAATGTAGATGTTGTGCTTGTGATTTGATTCCAATTGTGTCTATTTCCTTGTTCTTGTGATTTTAACAATCACTGTTCAGTTGGCTCACACTTGTTAACtgtacaagcacacacacttatgcatgcaagcatacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcataaataaataataacattGTAAAGGAGTGCAAGTTGATTTACTTTCTACAAAATTGTTCCAGTTAGTGGATGCGACTGAAATGGGTCCTATTGTCCATTACTGAACACAGTATGTGCAGCATGTGAAGTAGATCATAATAAAATGGATTTATTAACATCTA
>XM_039778667.1
CCCGTGCCGATTGGTCTGATGGGAGTGTGGAGAGGAGAGCGCCGGTATAAAAGCAGAGTGAGAGCAGAGCGgctcggagagagagagagagagagagagaggactgtAGCCTTCCTTCAGTCACagcacagagatacacacagcgCAGCCATGAGTGAGAGACAAGCATCTGGAGCAACGACTGGAAACAGCAAACCATCTGCTGGCCAAGGTCAACAAAAGGTTCCATCTAAACATGAGAAGAACAAGAACAACCTCCCCGAGGACTTTGACATCGACATGGAAAACCCGGAGACGGAGAAGGCCGCTGTCGCCATCCAGTCGCAGTTCAGGAAATTCCAGAAAAAGAAGCAGGATGTGAAGTCATAGAGCGGGCGCTGTCAGCTGCCTCGTCACTTGATGTGGGCCTGGTCTTGCATGTCATCAAACTGCACCGCCATGAACTGAAAAGTAAGGGTGGGGGTAGGGGGGCGGGGTGGTCTGGAGCTAAATAGTATCTTTGTGAAAGTCTGTGTGTAATTACTAACTTATAATGATATATACAAAAAGAATACATTATCAAATGAtgggtgtactgtatgtatttaaatctGTCATCTATCATTTAGCTGGTTCTGTTTTTTACTTCAATGACACTTGTGTAGCTGCAGTAGAGCTTTAAGTTTTAATAGTTTTTCTTATGTCACAATCAGTGTATTATACCCATGTAAAGTTAACAGCAAACTAAAAGAAGTCTTCTCATAAATTGTCAAAAACTGATTATCTTTAATTCAGGGGGAATATAAAGCCACATGCATTGCTGTGATTGCTTGGGTCATGATTTCATGGACAGTCTTAGCAAGGCGTCATAATCAAACGATATTGCAGCTCTACTGGAGCTCCGTTAATGGCATTTCCCTCTGGCTGGGTAAAATGATCCCACACAGTCGCCAGTGCTTTTACGCCGTATGACTGATGcttttaaaatcaaatcaatgTCTAATTTGTATTGGGTCTCCCCTCCATCACTTCTGTTCACCTGATGACATGAACCTCTCTGAGCTGTCAGCTTTCTAGAGAATGTAGATGTTGTGCTTGTGATTTGATTCCAATTGTGTCTATTTCCTTGTTCTTGTGATTTTAACAATCACTGTTCAGTTGGCTCACACTTGTTAACtgtacaagcacacacacttatgcatgcaagcatacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcataaataaataataacattGTAAAGGAGTGCAAGTTGATTTACTTTCTACAAAATTGTTCCAGTTAGTGGATGCGACTGAAATGGGTCCTATTGTCCATTACTGAACACAGTATGTGCAGCATGTGAAGTAGATCATAATAAAATGGATTTATTAACATCTA
>XM_039778668.1
GTGTGGAGAGGAGAGCGCCGGTATAAAAGCAGAGTGAGAGCAGAGCGgctcggagagagagagagagagagagagaggactgtAGCCTTCCTTCAGTCACagcacagagatacacacagcgCAGCCATGAGTGAGAGACAAGCATCTGGAGCAACGACTGGAAACAGCAAACCATCTGCTGGCCAAGATGAGAAGAACAAGAACAACCTCCCCGAGGACTTTGACATCGACATGGAAAACCCGGAGACGGAGAAGGCCGCTGTCGCCATCCAGTCGCAGTTCAGGAAATTCCAGAAAAAGAAGCAGGATGTGAAGTCATAGAGCGGGCGCTGTCAGCTGCCTCGTCACTTGATGTGGGCCTGGTCTTGCATGTCATCAAACTGCACCGCCATGAACTGAAAAGTAAGGGTGGGGGTAGGGGGGCGGGGTGGTCTGGAGCTAAATAGTATCTTTGTGAAAGTCTGTGTGTAATTACTAACTTATAATGATATATACAAAAAGAATACATTATCAAATGAtgggtgtactgtatgtatttaaatctGTCATCTATCATTTAGCTGGTTCTGTTTTTTACTTCAATGACACTTGTGTAGCTGCAGTAGAGCTTTAAGTTTTAATAGTTTTTCTTATGTCACAATCAGTGTATTATACCCATGTAAAGTTAACAGCAAACTAAAAGAAGTCTTCTCATAAATTGTCAAAAACTGATTATCTTTAATTCAGGGGGAATATAAAGCCACATGCATTGCTGTGATTGCTTGGGTCATGATTTCATGGACAGTCTTAGCAAGGCGTCATAATCAAACGATATTGCAGCTCTACTGGAGCTCCGTTAATGGCATTTCCCTCTGGCTGGGTAAAATGATCCCACACAGTCGCCAGTGCTTTTACGCCGTATGACTGATGcttttaaaatcaaatcaatgTCTAATTTGTATTGGGTCTCCCCTCCATCACTTCTGTTCACCTGATGACATGAACCTCTCTGAGCTGTCAGCTTTCTAGAGAATGTAGATGTTGTGCTTGTGATTTGATTCCAATTGTGTCTATTTCCTTGTTCTTGTGATTTTAACAATCACTGTTCAGTTGGCTCACACTTGTTAACtgtacaagcacacacacttatgcatgcaagcatacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcataaataaataataacattGTAAAGGAGTGCAAGTTGATTTACTTTCTACAAAATTGTTCCAGTTAGTGGATGCGACTGAAATGGGTCCTATTGTCCATTACTGAACACAGTATGTGCAGCATGTGAAGTAGATCATAATAAAATGGATTTATTAACATCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230485 False 1386 lncRNA 0.42 3 30474478 30502597
TU230486 False 1410 lncRNA 0.42 4 30474478 30502597
XM_039778667.1 True 1437 mRNA 0.43 4 30474451 30502597
XM_039778668.1 False 1389 mRNA 0.42 3 30474475 30502597

Neighbor

gene id symbol gene type direction distance location
igsf5a NA coding upstream 16646 30431788 ~ 30457805 (+)
slc37a4b LOC103394812,LOC103476137,LOC106951585,LOC106926292,LOC103129769 coding upstream 66722 30392228 ~ 30407729 (+)
LOC120543994 LOC103357896,LOC100709839,LOC102310645 coding upstream 165058 30294505 ~ 30309393 (+)
si:ch211-266i6.3 NA coding upstream 208093 30262106 ~ 30266358 (+)
dgat2 dgat2 coding upstream 464869 29994769 ~ 30009582 (+)
gdpd5a LOC103363747 coding downstream 421136 30923733 ~ 30964833 (+)
nrip1b nrip1 coding downstream 527244 31029841 ~ 31074831 (+)
usp25 usp25 coding downstream 590422 31093019 ~ 31132767 (+)
sim2 LOC107572951,LOC107676491,LOC106906485,LOC103129244 coding downstream 886997 31389594 ~ 31420284 (+)
sptbn4a LOC104963391,LOC100709524 coding downstream 1050191 31552788 ~ 31597093 (+)
LOC120544704 NA non-coding upstream 42964 30428738 ~ 30431487 (+)
G169930 NA non-coding upstream 56308 30411167 ~ 30418143 (+)
G169929 NA non-coding upstream 84820 30389381 ~ 30389631 (+)
G169855 stt3a non-coding upstream 199287 30270180 ~ 30275164 (+)
G169840 wnt11,LOC105418209 non-coding upstream 248824 30222508 ~ 30225627 (+)
G169964 LOC107386033,LOC105928111,LOC103476139 non-coding downstream 11792 30514389 ~ 30517602 (+)
G169974 NA non-coding downstream 36646 30539243 ~ 30549088 (+)
G169984 NA non-coding downstream 113951 30616548 ~ 30689523 (+)
G169990 NA non-coding downstream 174482 30677079 ~ 30698276 (+)
G169999 acat1 non-coding downstream 192915 30695512 ~ 30696719 (+)
G169814 NA other upstream 345519 30128532 ~ 30128932 (+)
uvrag uvrag other upstream 360761 30011333 ~ 30113690 (+)
G169789 map6 other upstream 503344 29945874 ~ 29971107 (+)
LOC120544198 vmp1 other upstream 1532119 28881734 ~ 28942332 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other upstream 1671566 28796512 ~ 28802885 (+)
G170156 NA other downstream 683340 31185937 ~ 31218284 (+)
LOC120544216 NA other downstream 977715 31480312 ~ 31509416 (+)
micu2 micu2,LOC103399085,LOC104943497 other downstream 1099917 31602514 ~ 31611713 (+)
G170284 NA other downstream 1175401 31677998 ~ 31680066 (+)
G170409 NA other downstream 1561570 32064167 ~ 32064730 (+)

Expression


Co-expression Network