capns1a (LOC105901516,LOC107655908,LOC105011036,LOC107700232)


Basic Information

Item Value
gene id capns1a
gene name LOC105901516,LOC107655908,LOC105011036,LOC107700232
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31821224 ~ 31832710 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778156.1
TGAGTCATCCTCTTGTATCCCATTTTCTCTCTGTAGCGTCAGTCGGGGCGTGTCACGGACTCCTGAGTTCAAGAGTTAGAGCAACTCAAATTATCCTGCTAGCGAATCTACGAAGTGCTGTTGCCTTACGTTGACAGAAGATGTTTTTTGCCAAGAAATTTATGAGTGGCCTCATTGATGTTGTCAGCAACATCGACCCAGCCCAGTTCGTGCCTTCTGACCCTCCTCCCCCCCGCAGACCAGTCCAATATGCAGAGCATAATGAGAGCAATGAAGAGAAACAGTTCCGCAGAGTCTTCCAGCAACTTGCTGGAGATGATATGGAAGTGAGCCCATCTGAGCTGATGAACATCCTAAACAGAATCGTTACAAAGCATCAGGACCTGAAGACAGAGGGTTTCAGCATTGAGTCTTGTAGGAGCATGGTGGCAGTCATGGATGAGGACAGCACTGGGAAACTGGGCTTTCATGAATTCAAACACCTCTGGGACAATATAAAGAAATGGCAGGGAGTGTACAAATCCTACGACGCAGACGGTTCCGGTTTCATTAGTGCAGATGAGTTGCCCAACGCTTTCAGAGCTGCCGGCTTCCCCCTCAATGACCAGCTGTTCAGCATGATAATTCGCAGATACAGCGATGACAATGGGAACCTGGATTTTGACAACTACATTGGCTGCCTTGTGAGGCTGGACGCCATGTGCCGTGCCTTCAAAACCCTGGATAAGGATAACAATGGGACCATCAAAGTCAACGTTCAGGAGtggCTTCAGTTGACCATGTACTCTTGAGTCCAGACGATGTCTCTCCTGCTTGTTATATGAAACCACTTTTTGTTTGTCCATGCAGTGCAAAAAATATATTCTCAGCCATCTCTACAACATCCTGTTGTCCAGCAGTATCCCTTGTGTGTGCAGGTTTCTTTTGTATGTTAATGCAAGTGTTGTGGGATTGTTCACTGTTCCATTATACTTGCGAGACAGAATGTATACTGTATTAAGCTAACCAAGAAAAGCACAAACCTGCACTCACAATGGTACCCCATAGCTGAGGATCAACTCATGATTTAGGTGCATAAAGATGCTAGTATGTTGAATTGGTATCATTTGGTCCGTCTATTTGGCATATACCTTTTGATTTTCCTCATGCCTGAGAGCAGGCAGGCCAACATCAAGAAATTTTACACAGTGACTTTCATGAAAAACCTAATGTGAAAGCAGGAAGCTTCCGTTCATATGTGGCTGCGGCTGGTTtcacaaatactgtatgttagAGGGATCTGTGGAGATAGGCCGATATTACTTTTGCTCTGAGACTGTTTAAATGGTAAAATGGTGATGCTGGACAAAAAGACGTCACACCTGACAACTCTGTCACTTGCTAGCAAAATCAGGAAAGCCTACCTCACTCGtcactgcaacaaaaaaaaaggcacacaaaTTCAGATGTTAACAGTGTGAcgctttctctctgctgttatTTTTGTTATACCTTTAGCGTTCATATTGGGGGAGTTGTGTGACCAGATTGCAAAGATTCTTAGAAAAACTCCACCCAACTTTAACCTGAGCAGGACTTACCAGCTTCCCCactaactgaaaacacctgtgagGATGTGCAGGGCCTTTGAGAGAGTGTTAATGTACCCATATGGCAAACAGCAAATCTGTCCTAAAGGCTCAGCACACAGCATATTTTCAGGTATTATGACTGAGTACACCTCTGATTAGGGTGAAGTTGGGTGGAGCTATTCTGTGAATGACTTACCAAATCCCATTAAGTCATAAGAATCATGACTAGGGTGTTGTCCCAGCCAAAGGGGGAAAACAACACTAACAGGAGCGTTGGCGAAATGGCAGTCAGTCTGTTCACACCTACAGTATGCAGCCCAGAGAGGAGGCCTAATTTGGGTAAATATAAACAGGTATGGGTGGAACGTGTCTTTGCAGAGACTTTCAGAAAGActtaaacagacagacagctttgtAAAGTTCAAGGTGTAACTTCACTATTTCTTAGACCGCAGTCCTATTCAATATCCTTGTGAAACCAGCCCCAAACCGGTAGGCTAATATTTTTCCATTTAATGTTCAATGCTGGTAATGCAACTTGGCCATAGAAATCTCCCATGTTTCAGCTCACTGATCCCTTTACTTATCACAGTATACTTATTCAAAATGCCTGCACCAGATCATGCCCGCACAATGTGTAAATTGATAATATATGACGTGTGTATGCCACTTATGCATGCAGCCAATAGTAAAGATGCCATTAATAAGTGTTTTTAACCACTTAGTATAGCCACAGTCATTTACGTGTTACTGAAAATGCTTGGTTGATAAATATCTGTGCCATATTTGGAATAAAAAGGGTATGTTAAAAT

Function

NR:

description
PREDICTED: calpain small subunit 1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08583 CAPNS1, CAPN4; calpain, small subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778156.1 True 2383 mRNA 0.43 11 31821224 31832710

Neighbor

gene id symbol gene type direction distance location
zgc:153990 LOC100707906,LOC104931663,LOC101474151,LOC103368854,LOC104958674 coding downstream 748 31816698 ~ 31820476 (-)
dlb LOC103368855,LOC104958673,LOC102194066 coding downstream 22026 31792212 ~ 31799198 (-)
ppp1r14aa LOC102789074,LOC102194351,LOC100701109,LOC106674905,LOC102312976 coding downstream 30967 31782788 ~ 31790257 (-)
exoc3l2a LOC104961008,LOC103368858,LOC101474218,LOC100708444 coding downstream 43512 31764070 ~ 31777712 (-)
mark4a mark4,LOC101472647,LOC102194939,LOC100708718,LOC107386318 coding downstream 78972 31705009 ~ 31742252 (-)
nova1 LOC105909730,LOC105023060,LOC103377877,LOC100701682,LOC106580748,LOC101481231 coding upstream 17396 31850106 ~ 31873410 (-)
kptn kptn coding upstream 41696 31874406 ~ 31888517 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC107388308,LOC107572204,LOC105909691 coding upstream 76715 31909425 ~ 31913451 (-)
arhgap32b arhgap32 coding upstream 85077 31917787 ~ 31967642 (-)
LOC120543954 arhgap32 coding upstream 138170 31970880 ~ 32064710 (-)
G170332 NA non-coding downstream 75540 31744851 ~ 31745684 (-)
LOC120544288 NA non-coding downstream 231211 31566368 ~ 31590013 (-)
G170209 NA non-coding downstream 438733 31382209 ~ 31382491 (-)
G170205 NA non-coding downstream 473823 31346574 ~ 31347401 (-)
G170202 NA non-coding downstream 530211 31290711 ~ 31291013 (-)
G170424 NA non-coding upstream 67376 31900086 ~ 31901144 (-)
G170425 LOC103357888 non-coding upstream 69302 31902012 ~ 31906986 (-)
G170432 NA non-coding upstream 130890 31963600 ~ 32000128 (-)
G170444 NA non-coding upstream 178763 32011473 ~ 32011840 (-)
G170446 NA non-coding upstream 188637 32021347 ~ 32021731 (-)
G170098 NA other downstream 862726 30957501 ~ 30958498 (-)
LOC120543892 LOC103394800 other downstream 970170 30846998 ~ 30851054 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other downstream 990915 30737565 ~ 30830309 (-)
LOC120575604 NA other downstream 1089142 30718215 ~ 30732082 (-)
si:ch73-1a9.3 NA other downstream 1406489 30411229 ~ 30414735 (-)
G170463 NA other upstream 368999 32201709 ~ 32202206 (-)
LOC120543978 fez1 other upstream 610576 32443286 ~ 32491305 (-)
ntm LOC100703630,LOC102197934,LOC101488072,LOC102307721,LOC103141059 other upstream 1735911 33568621 ~ 34100246 (-)
G170802 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC103356012,LOC107574861,LOC108179079 other upstream 2476284 34308994 ~ 34309714 (-)
cblb cblb other upstream 3090663 34923373 ~ 35016119 (-)

Expression


Co-expression Network