kptn (kptn)


Basic Information

Item Value
gene id kptn
gene name kptn
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31874406 ~ 31888517 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778213.1
TGACGTCCATGGCATAAAACAACGTCCATGCTTATTACAGTCCGAAATATACCAGAAACTTCGAATTTCTGTCtttggaataaaataaaaatcgtTATTACTGAATCAAGCGTTACATATAACAGTTTATCGTAAGTGTTAGCTATATTTCGAAACGAATGGCCGGACATTTCTAGTTTAATTTGAGCTAATTTACATTGAACGTGAATGGAGTTGGAGAACGGAGCAGCCACGGAACAACaatgaacacacttcattcttGACATTTCTGATACAACTAGTGAGTTCGGCTTCATCCTGCAGGATGCTGCGAGAGTCGTATCCCTTCGCGGAGGACAGTTTCAGCCGCTTCCCGTCGCAGAGCAACATTTACGGACTGTGTCAGGCCGGGGAGCAAGAGCTGCTGGCGGCCACCCTCAAAGGGAAGGTGCTGTGTTTCAGATACCAGGAGCTGCAGCACAAAATCCGACCGGTGGCCAAGGAGGTTCAGTTCACCTACATCCCGGTCGATGCAGAGATTGTCTCAATTGACGCCTTCAACAAGTCTCCGCCCAAAAGAGGCCTGGTGGTGGGCATCACATTCGTAAAGGACTCTGGTGACAAAGCCACGCCGTTCCTGAACATCTACTGTGACTACGAGCCGGGCTCAGAGTTCAACCTCGAGTCTATTGCACAGAGCTGCCTGAATCTGGAGCTGCAGTTCACGCCCTTTCACCTGTACCACTCAGAAGTGCAGTGTGACGatggaggcagagagacagtgTTCCTGCTCAGCGGCCATGACCAGAGGATCCACCTGTACAAGGAGAACGCCTCCCTCCACCAGTTTGAAGAGCAGCCAGTGGAGAGACTCTTCCCTGAACTACAACAGCTGCCCAGCAATGTGCTTTGGCTGGATATGTTGAGTATAGCTGGTGGCCGGCGGCTCTCAGCGTTTGGCTGTCAGAATGGCTGCGTTGGACTGGCTCTGGTCAACCACACAGGCCCAGAGGTTTTGCAGAGCTGGCGGTTCCAGTTCGACAGTCCAATCTCTTCAGTGCTGCTGTTCCCTCTGAGCTGCCAGACTGAGCCCAACCAGCCCAGCGGAGAGCAAAGTGTGGAAATGGAAAGCTACAACCTCCTAGTAACCAGTAGTATAGAGATGGCAGTCGTCTACAGAGATGTCCAGGAGCGAGGTTTGTCTTGCTCGGTGTGCCTCTCAGAGAGTGACCAGTGGGACGCTGTGCTTTGTGCTCTGGTCATTGACCTGGATTTTGACGGGCAGAAGGAGGTGCTGTTGGGAACATACGGGCAGGAACTTCTTTGTTACAAATACCAGCCGGCAGGGAGAGGACAAGACGGACAGTTTCAGCTGCAGTGGAGGCGGAGCTTCAAGAGTCCTTTGCTGTCCATCATCTACTTAGACTTGACCGGGGACGGTTTGAGAGAGCTTGCCGTCCTCACACTGAAGGGACTGCATATCTTACAGCATTCTCTCACCAGCACTGCTGATTTGGTCCTGGAGCGGCTCGCCCTCAGGGTGTCAGCCCTCTCAGCTGGGTCCGAGCTGGAGTCAGCCAAAGCACGAGACGCTGAGGAGAAGGATGCTCCGGCTAAGGCAGAGGAGAGTACAGCGCCGACACCACCGACAAAAGAGAAACCGTGCATTGTGTTTCCATGTGGAAGTCTTGACGGTTCGGACTCAGGGTTTCGCCCATAAAAGTTGTTAAGCCTTAGGCAAGTGTCTTTTTGAAttggagatttgaaaatatgactatgtctaagtttccaaccgtttttctaagattattttttggccattttcaacctttattttgataggacagcagaagacatgaaaggggagaatgacatgcagcaaagggccgtaggtcagagtcgaacccgggacctctgcgtcgaggagtaaacctctatatatgggcgcctgctctaccaactgagctatcagGGCGCCCTTCCAACCATTTTAAAAGCgtcttaaaatatataaaaaaatacttcccagtggcttaggccTTGTGGGGAGAAACTTAGGCCCACCAGGCTTACAGtacactgggggaaaccctgagaCTGAAGTGTTTGCCTTATTTACACGTGGGACGTGAAGGATTTTCTCAGGGGTGTGTATTCCTGAACAGTTACATTGTAGTTGTGCCGCTAGTTACAAAATCCAACATCACATTAGCCACCAAAAACAGTGCCACTCTGCTTTGTGGTGGAATACTGAACGTAGGTGACAGTAAAAGGAACTGTGTGAAGAGCTGACATTAAGCTATGAGCTGATACATTGATACACTGATATGTGCTGTACATTTGCAGATAATAAATCCCGTCTGGGTCTATACACTCAC

Function

symbol description
kptn Predicted to enable actin filament binding activity. Predicted to be involved in cellular response to amino acid starvation and negative regulation of TORC1 signaling. Predicted to act upstream of or within actin filament organization. Predicted to be located in actin cytoskeleton. Predicted to be part of KICSTOR complex. Predicted to be active in lamellipodium. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human KPTN (kaptin, actin binding protein).

NR:

description
kaptin isoform X2

GO: NA

KEGG:

id description
K23295 KPTN; KICSTOR complex protein kaptin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778213.1 True 2357 mRNA 0.50 12 31874406 31888517

Neighbor

gene id symbol gene type direction distance location
nova1 LOC105909730,LOC105023060,LOC103377877,LOC100701682,LOC106580748,LOC101481231 coding downstream 996 31850106 ~ 31873410 (-)
capns1a LOC105901516,LOC107655908,LOC105011036,LOC107700232 coding downstream 41696 31821224 ~ 31832710 (-)
zgc:153990 LOC100707906,LOC104931663,LOC101474151,LOC103368854,LOC104958674 coding downstream 53930 31816698 ~ 31820476 (-)
dlb LOC103368855,LOC104958673,LOC102194066 coding downstream 75208 31792212 ~ 31799198 (-)
ppp1r14aa LOC102789074,LOC102194351,LOC100701109,LOC106674905,LOC102312976 coding downstream 84149 31782788 ~ 31790257 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC107388308,LOC107572204,LOC105909691 coding upstream 20908 31909425 ~ 31913451 (-)
arhgap32b arhgap32 coding upstream 29270 31917787 ~ 31967642 (-)
LOC120543954 arhgap32 coding upstream 82363 31970880 ~ 32064710 (-)
vps26bl LOC104931657,LOC103357891,LOC100706835,LOC101482660 coding upstream 190459 32078976 ~ 32090441 (-)
LOC120544316 LOC102214061,LOC102298006,LOC103357892,LOC101063296 coding upstream 210700 32099217 ~ 32144087 (-)
G170332 NA non-coding downstream 128722 31744851 ~ 31745684 (-)
LOC120544288 NA non-coding downstream 284393 31566368 ~ 31590013 (-)
G170209 NA non-coding downstream 491915 31382209 ~ 31382491 (-)
G170205 NA non-coding downstream 527005 31346574 ~ 31347401 (-)
G170202 NA non-coding downstream 583393 31290711 ~ 31291013 (-)
G170424 NA non-coding upstream 11569 31900086 ~ 31901144 (-)
G170425 LOC103357888 non-coding upstream 13495 31902012 ~ 31906986 (-)
G170432 NA non-coding upstream 75083 31963600 ~ 32000128 (-)
G170444 NA non-coding upstream 122956 32011473 ~ 32011840 (-)
G170446 NA non-coding upstream 132830 32021347 ~ 32021731 (-)
G170098 NA other downstream 915908 30957501 ~ 30958498 (-)
LOC120543892 LOC103394800 other downstream 1023352 30846998 ~ 30851054 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other downstream 1044097 30737565 ~ 30830309 (-)
LOC120575604 NA other downstream 1142324 30718215 ~ 30732082 (-)
si:ch73-1a9.3 NA other downstream 1459671 30411229 ~ 30414735 (-)
G170463 NA other upstream 313192 32201709 ~ 32202206 (-)
LOC120543978 fez1 other upstream 554769 32443286 ~ 32491305 (-)
ntm LOC100703630,LOC102197934,LOC101488072,LOC102307721,LOC103141059 other upstream 1680104 33568621 ~ 34100246 (-)
G170802 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC103356012,LOC107574861,LOC108179079 other upstream 2420477 34308994 ~ 34309714 (-)
cblb cblb other upstream 3034856 34923373 ~ 35016119 (-)

Expression


Co-expression Network